Wall clock time and date at job start Mon Mar 8 2021 08:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.36625 * 119.53815 * 75.26697 * 7 2 1 9 9 O 1.35802 * 120.23060 * 0.02562 * 8 7 2 10 10 S 1.52202 * 113.99696 * 90.00076 * 9 8 7 11 11 O 1.42098 * 106.40196 * 188.54208 * 10 9 8 12 12 O 1.42103 * 106.40402 * 321.46191 * 10 9 8 13 13 C 1.76194 * 107.21953 * 75.00044 * 10 9 8 14 14 C 1.38235 * 120.00263 * 270.27385 * 13 10 9 15 15 C 1.38237 * 120.00324 * 180.02562 * 14 13 10 16 16 C 1.38232 * 119.99615 * 359.97155 * 15 14 13 17 Xx 1.81011 * 119.99875 * 179.97438 * 16 15 14 18 17 F 9.72740 * 134.70714 * 258.48825 * 7 1 2 19 18 F 1.61000 * 89.99633 * 135.00271 * 17 16 15 20 19 F 1.60996 * 89.99867 * 315.00610 * 17 16 15 21 20 F 1.60993 * 89.99970 * 225.00405 * 17 16 15 22 21 F 1.61003 * 89.99530 * 45.00530 * 17 16 15 23 22 C 1.38229 * 120.00449 * 359.96355 * 16 15 14 24 23 C 1.38236 * 120.00041 * 90.00224 * 13 10 9 25 24 C 1.41013 * 119.54179 * 180.02562 * 8 7 2 26 25 C 1.40362 * 121.29100 * 180.02562 * 25 8 7 27 26 C 1.36176 * 119.66185 * 179.97438 * 26 25 8 28 27 C 1.39304 * 120.97349 * 0.02562 * 27 26 25 29 28 C 1.36138 * 120.97704 * 0.02562 * 28 27 26 30 29 C 1.40512 * 119.64684 * 359.96309 * 29 28 27 31 30 C 1.40568 * 121.26990 * 180.02562 * 30 29 28 32 31 C 1.36139 * 119.76537 * 179.70334 * 31 30 29 33 32 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 34 33 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 35 34 H 1.08002 * 119.99808 * 359.97438 * 14 13 10 36 35 H 1.07997 * 119.99857 * 179.97438 * 15 14 13 37 36 H 1.07997 * 120.00236 * 180.02562 * 23 16 15 38 37 H 1.08004 * 119.99819 * 0.20546 * 24 13 10 39 38 H 1.08001 * 120.17016 * 359.96472 * 26 25 8 40 39 H 1.08006 * 119.51581 * 179.97438 * 27 26 25 41 40 H 1.08006 * 119.51448 * 180.02562 * 28 27 26 42 41 H 1.07993 * 120.17861 * 179.97438 * 29 28 27 43 42 H 1.07997 * 120.11249 * 359.97438 * 31 30 29 44 43 H 1.07999 * 119.46346 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 1.8708 -2.0740 1.2927 9 8 1.3621 -2.7841 0.2530 10 16 2.3983 -3.1898 -0.7854 11 8 1.6763 -3.7362 -1.8805 12 8 3.2901 -2.0908 -0.9131 13 6 3.3356 -4.5136 -0.0973 14 6 4.4730 -4.2446 0.6408 15 6 5.2087 -5.2832 1.1802 16 6 4.8065 -6.5908 0.9821 17 9 6.6260 -9.1605 2.3170 18 9 4.4114 -8.6517 2.1923 19 9 7.1289 -7.2500 1.1833 20 9 5.6644 -8.7492 0.2937 21 9 5.8759 -7.1525 3.0819 22 6 3.6684 -6.8598 0.2452 23 6 2.9304 -5.8210 -0.2907 24 6 2.3403 -2.7388 2.4443 25 6 2.2962 -4.1380 2.5472 26 6 2.7591 -4.7457 3.6744 27 6 3.2769 -3.9991 4.7304 28 6 3.3344 -2.6405 4.6660 29 6 2.8661 -1.9786 3.5183 30 6 2.9097 -0.5774 3.4152 31 6 2.4532 0.0318 2.2866 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5139 -0.8900 34 1 4.7874 -3.2230 0.7953 35 1 6.0976 -5.0730 1.7565 36 1 3.3540 -7.8814 0.0907 37 1 2.0411 -6.0312 -0.8665 38 1 1.8969 -4.7295 1.7366 39 1 2.7236 -5.8225 3.7513 40 1 3.6380 -4.5056 5.6134 41 1 3.7379 -2.0744 5.4923 42 1 3.3081 0.0134 4.2268 43 1 2.4887 1.1086 2.2128 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_8643202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:44:41 Heat of formation + Delta-G solvation = 335.182246 kcal Electronic energy + Delta-G solvation = -43838.013445 eV Core-core repulsion = 37499.276821 eV Total energy + Delta-G solvation = -6338.736625 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 438.056 amu Computer time = 23.32 seconds Orbital eigenvalues (eV) -44.45274 -44.33623 -44.21731 -44.15444 -43.69387 -42.94464 -41.45002 -40.43392 -38.91002 -38.61664 -37.50882 -36.87762 -33.64224 -33.29396 -32.99646 -32.09207 -30.39949 -27.21836 -25.11633 -24.92770 -24.61514 -23.92015 -23.27149 -21.76388 -20.64167 -19.59238 -19.08506 -18.74130 -18.59039 -17.71703 -17.24783 -17.03989 -16.74265 -16.63231 -16.28873 -16.02321 -15.95321 -15.74777 -15.64661 -15.57740 -15.21194 -15.13606 -14.95943 -14.85720 -14.74047 -14.60792 -14.48208 -14.30337 -14.22595 -14.19721 -14.08144 -13.98814 -13.97828 -13.87823 -13.77631 -13.68923 -13.66982 -13.63761 -13.52946 -13.25683 -12.82794 -12.62265 -12.41224 -12.34675 -12.28263 -12.07498 -11.98099 -11.95765 -11.66891 -11.64818 -11.45480 -11.23870 -10.98089 -10.53540 -9.85241 -9.08230 -5.33751 -4.87802 -3.54196 -1.66024 -1.36672 -0.84431 -0.64667 -0.29170 0.67486 0.86106 1.07465 1.32340 1.42514 1.57342 1.71439 1.95681 2.07905 2.32411 2.47275 2.60152 2.78494 3.08783 3.15360 3.16327 3.45697 3.51484 3.58664 3.62222 3.68420 3.79565 3.82466 3.88432 3.94778 4.09787 4.11200 4.24485 4.25941 4.28600 4.45022 4.54028 4.61424 4.67967 4.84791 4.92417 5.00845 5.11254 5.35442 5.45323 5.55389 5.78232 6.64786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.120 4.120 3 Si 0.978 3.022 4 H -0.215 1.215 5 H -0.240 1.240 6 H -0.274 1.274 7 C -0.069 4.069 8 C 0.055 3.945 9 O -0.636 6.636 10 S 2.679 3.321 11 O -0.933 6.933 12 O -0.943 6.943 13 C -0.698 4.698 14 C 0.057 3.943 15 C -0.123 4.123 16 C 0.399 3.601 17 F -0.198 7.198 18 F -0.159 7.159 19 F -0.169 7.169 20 F -0.169 7.169 21 F -0.150 7.150 22 C -0.126 4.126 23 C 0.055 3.945 24 C -0.057 4.057 25 C -0.147 4.147 26 C -0.093 4.093 27 C -0.119 4.119 28 C -0.081 4.081 29 C -0.052 4.052 30 C -0.043 4.043 31 C -0.135 4.135 32 H 0.394 0.606 33 H 0.105 0.895 34 H 0.216 0.784 35 H 0.208 0.792 36 H 0.211 0.789 37 H 0.225 0.775 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.181 0.819 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 11.190 4.215 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.228 4.228 3 Si 0.797 3.203 4 H -0.138 1.138 5 H -0.163 1.163 6 H -0.199 1.199 7 C -0.072 4.072 8 C 0.013 3.987 9 O -0.595 6.595 10 S 2.770 3.230 11 O -0.931 6.931 12 O -0.941 6.941 13 C -0.779 4.779 14 C 0.039 3.961 15 C -0.141 4.141 16 C 0.394 3.606 17 F -0.198 7.198 18 F -0.158 7.158 19 F -0.167 7.167 20 F -0.168 7.168 21 F -0.148 7.148 22 C -0.144 4.144 23 C 0.037 3.963 24 C -0.058 4.058 25 C -0.165 4.165 26 C -0.111 4.111 27 C -0.137 4.137 28 C -0.099 4.099 29 C -0.052 4.052 30 C -0.061 4.061 31 C -0.152 4.152 32 H 0.244 0.756 33 H 0.122 0.878 34 H 0.232 0.768 35 H 0.225 0.775 36 H 0.227 0.773 37 H 0.241 0.759 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.198 0.802 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.967 12.072 3.147 13.090 hybrid contribution 0.729 -2.642 0.854 2.871 sum -3.238 9.429 4.001 10.743 Atomic orbital electron populations 1.86568 1.16297 1.82187 1.50292 1.25549 0.85930 1.13804 0.97534 0.85297 0.81042 0.72198 0.81742 1.13758 1.16343 1.19942 1.20409 0.96730 0.92282 0.97825 1.17584 1.05201 0.89493 0.86453 1.85742 1.56220 1.73033 1.44514 1.02884 0.72762 0.73694 0.73653 1.93676 1.71171 1.79883 1.48396 1.93644 1.66571 1.49048 1.84853 1.31920 1.13193 1.17225 1.15585 1.21564 0.88046 0.99173 0.87285 1.22218 1.05261 0.83810 1.02817 1.27923 0.80463 0.59509 0.92718 2.00000 1.74851 1.99700 1.45285 1.99919 1.45741 1.97530 1.72581 1.99922 1.72494 1.92240 1.52087 1.99922 1.95923 1.97456 1.23463 1.99919 1.80703 1.86669 1.47543 1.22322 0.90032 1.06175 0.95837 1.21663 0.97701 0.85514 0.91438 1.18047 1.00399 0.94299 0.93088 1.21165 1.02171 0.92842 1.00314 1.21137 0.95901 1.01128 0.92937 1.21254 0.98476 0.94745 0.99219 1.21451 0.96933 0.94724 0.96742 1.18180 0.99377 0.94005 0.93661 1.21695 0.93785 0.92725 0.97942 1.20986 0.99914 1.01659 0.92674 0.75561 0.87763 0.76762 0.77489 0.77263 0.75871 0.84970 0.85107 0.84048 0.81678 0.80186 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 415. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.68 12.88 -148.98 -1.92 -1.24 16 2 C -0.12 0.23 2.20 71.23 0.16 0.39 16 3 Si 0.98 -4.97 25.46 68.60 1.75 -3.22 16 4 H -0.22 2.16 6.70 99.48 0.67 2.82 16 5 H -0.24 1.14 7.11 99.48 0.71 1.85 16 6 H -0.27 0.09 7.11 99.48 0.71 0.80 16 7 C -0.07 0.28 4.69 -20.00 -0.09 0.19 16 8 C 0.05 -0.18 4.77 22.57 0.11 -0.07 16 9 O -0.64 1.07 8.82 -60.61 -0.53 0.53 16 10 S 2.68 -6.74 5.03 -56.49 -0.28 -7.02 16 11 O -0.93 -2.70 17.27 -118.78 -2.05 -4.76 16 12 O -0.94 0.75 13.81 -118.78 -1.64 -0.89 16 13 C -0.70 6.11 3.40 22.27 0.08 6.19 16 14 C 0.06 -0.61 7.18 22.27 0.16 -0.45 16 15 C -0.12 1.01 8.62 22.27 0.19 1.20 16 16 C 0.40 -1.13 4.82 22.27 0.11 -1.03 16 17 F -0.20 -4.46 16.66 44.97 0.75 -3.71 16 18 F -0.16 -1.73 15.31 44.97 0.69 -1.04 16 19 F -0.17 -2.13 15.31 44.97 0.69 -1.44 16 20 F -0.17 -2.19 15.31 44.97 0.69 -1.50 16 21 F -0.15 -1.50 15.31 44.97 0.69 -0.81 16 22 C -0.13 1.06 8.62 22.27 0.19 1.25 16 23 C 0.05 -0.63 8.67 22.27 0.19 -0.43 16 24 C -0.06 0.34 5.05 -21.23 -0.11 0.24 16 25 C -0.15 1.05 6.63 22.31 0.15 1.20 16 26 C -0.09 0.70 9.95 22.05 0.22 0.92 16 27 C -0.12 1.07 9.95 22.04 0.22 1.29 16 28 C -0.08 0.90 9.77 22.34 0.22 1.12 16 29 C -0.05 0.47 5.74 -21.30 -0.12 0.35 16 30 C -0.04 0.52 9.77 22.35 0.22 0.74 16 31 C -0.13 1.27 8.55 22.02 0.19 1.46 16 32 H 0.39 -3.85 8.70 -74.06 -0.64 -4.49 16 33 H 0.10 0.05 5.48 -2.39 -0.01 0.04 16 34 H 0.22 -3.32 7.62 -2.91 -0.02 -3.34 16 35 H 0.21 -2.15 7.40 -2.91 -0.02 -2.17 16 36 H 0.21 -2.22 7.40 -2.91 -0.02 -2.25 16 37 H 0.22 -3.77 7.62 -2.91 -0.02 -3.80 16 38 H 0.13 -1.28 5.33 -2.91 -0.02 -1.30 16 39 H 0.13 -1.06 8.06 -2.91 -0.02 -1.08 16 40 H 0.14 -1.54 8.06 -2.91 -0.02 -1.56 16 41 H 0.17 -2.70 8.06 -2.91 -0.02 -2.72 16 42 H 0.18 -3.40 8.06 -2.91 -0.02 -3.42 16 43 H 0.16 -2.15 4.79 -2.91 -0.01 -2.17 16 Total: 0.00 -35.46 387.05 2.11 -33.35 By element: Atomic # 1 Polarization: -24.01 SS G_CDS: 1.21 Total: -22.80 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 2.07 Total: 14.55 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -6.15 Total: -6.36 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 3.50 Total: -8.51 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 1.75 Total: -3.22 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -0.28 Total: -7.02 kcal Total: -35.46 2.11 -33.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_8643202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 368.535 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 333.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 335.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.32 seconds