Wall clock time and date at job start Mon Mar 8 2021 08:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.36625 * 119.53815 * 75.26697 * 7 2 1 9 9 O 1.35802 * 120.23060 * 0.02562 * 8 7 2 10 10 S 1.52202 * 113.99696 * 90.00076 * 9 8 7 11 11 O 1.42098 * 106.40196 * 188.54208 * 10 9 8 12 12 O 1.42103 * 106.40402 * 321.46191 * 10 9 8 13 13 C 1.76194 * 107.21953 * 75.00044 * 10 9 8 14 14 C 1.38213 * 120.00286 * 270.27566 * 13 10 9 15 15 C 1.38260 * 120.00291 * 180.02562 * 14 13 10 16 16 C 1.38214 * 119.99549 * 359.97438 * 15 14 13 17 17 C 1.38254 * 120.00396 * 359.97412 * 16 15 14 18 Xx 1.81001 * 119.99734 * 179.97438 * 17 16 15 19 18 F 9.52877 * 105.96553 * 255.38486 * 7 1 2 20 19 F 1.61001 * 90.00203 * 315.00071 * 18 17 16 21 20 F 1.60999 * 89.99739 * 135.00567 * 18 17 16 22 21 F 1.60994 * 90.00289 * 45.00225 * 18 17 16 23 22 F 1.61008 * 89.99654 * 225.00291 * 18 17 16 24 23 C 1.38211 * 119.99816 * 359.82050 * 17 16 15 25 24 C 1.41013 * 119.54179 * 180.02562 * 8 7 2 26 25 C 1.40362 * 121.29100 * 180.02562 * 25 8 7 27 26 C 1.36176 * 119.66185 * 179.97438 * 26 25 8 28 27 C 1.39304 * 120.97349 * 0.02562 * 27 26 25 29 28 C 1.36138 * 120.97704 * 0.02562 * 28 27 26 30 29 C 1.40512 * 119.64684 * 359.96309 * 29 28 27 31 30 C 1.40568 * 121.26990 * 180.02562 * 30 29 28 32 31 C 1.36139 * 119.76537 * 179.70334 * 31 30 29 33 32 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 34 33 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 35 34 H 1.07996 * 119.99616 * 359.97138 * 14 13 10 36 35 H 1.07991 * 119.99989 * 179.97438 * 15 14 13 37 36 H 1.08004 * 119.99576 * 179.97438 * 16 15 14 38 37 H 1.08005 * 119.99640 * 179.97438 * 24 17 16 39 38 H 1.08001 * 120.17016 * 359.96472 * 26 25 8 40 39 H 1.08006 * 119.51581 * 179.97438 * 27 26 25 41 40 H 1.08006 * 119.51448 * 180.02562 * 28 27 26 42 41 H 1.07993 * 120.17861 * 179.97438 * 29 28 27 43 42 H 1.07997 * 120.11249 * 359.97438 * 31 30 29 44 43 H 1.07999 * 119.46346 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 1.8708 -2.0740 1.2927 9 8 1.3621 -2.7841 0.2530 10 16 2.3983 -3.1898 -0.7854 11 8 1.6763 -3.7362 -1.8805 12 8 3.2901 -2.0908 -0.9131 13 6 3.3356 -4.5136 -0.0973 14 6 4.4728 -4.2447 0.6407 15 6 5.2086 -5.2835 1.1802 16 6 4.8065 -6.5909 0.9820 17 6 3.6684 -6.8599 0.2447 18 9 2.6728 -10.0951 -0.2450 19 9 4.6599 -8.9864 -0.3582 20 9 1.6248 -8.1579 0.3272 21 9 3.4070 -8.8899 1.5405 22 9 2.8777 -8.2544 -1.5715 23 6 2.9305 -5.8213 -0.2910 24 6 2.3403 -2.7388 2.4443 25 6 2.2962 -4.1380 2.5472 26 6 2.7591 -4.7457 3.6744 27 6 3.2769 -3.9991 4.7304 28 6 3.3344 -2.6405 4.6660 29 6 2.8661 -1.9786 3.5183 30 6 2.9097 -0.5774 3.4152 31 6 2.4532 0.0318 2.2866 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5139 -0.8900 34 1 4.7872 -3.2231 0.7952 35 1 6.0974 -5.0733 1.7565 36 1 5.3815 -7.4024 1.4031 37 1 2.0416 -6.0315 -0.8674 38 1 1.8969 -4.7295 1.7366 39 1 2.7236 -5.8225 3.7513 40 1 3.6380 -4.5056 5.6134 41 1 3.7379 -2.0744 5.4923 42 1 3.3081 0.0134 4.2268 43 1 2.4887 1.1086 2.2128 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_9043274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:59:16 Heat of formation + Delta-G solvation = 333.454891 kcal Electronic energy + Delta-G solvation = -43940.477130 eV Core-core repulsion = 37601.665602 eV Total energy + Delta-G solvation = -6338.811528 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 438.056 amu Computer time = 51.02 seconds Orbital eigenvalues (eV) -44.50615 -44.36014 -44.30508 -44.21181 -43.70473 -42.96127 -41.44056 -40.43284 -38.98275 -38.64524 -37.60454 -36.87773 -33.76774 -33.27037 -32.79399 -32.07553 -30.36865 -27.22209 -25.53104 -24.82716 -24.36516 -23.90304 -23.24148 -21.76503 -20.38245 -19.63008 -19.07538 -18.79256 -18.70576 -17.94256 -17.70854 -17.18280 -16.83091 -16.32690 -16.08465 -16.05187 -15.88802 -15.77037 -15.64219 -15.44473 -15.17359 -15.10825 -14.95966 -14.88469 -14.78488 -14.47203 -14.41474 -14.28754 -14.28168 -14.19317 -14.17199 -14.02679 -14.02295 -13.87962 -13.83436 -13.80293 -13.73289 -13.73085 -13.60214 -13.52857 -12.73350 -12.60337 -12.44598 -12.38083 -12.23184 -12.07976 -12.05420 -11.96673 -11.65645 -11.53316 -11.50664 -11.23432 -10.97079 -10.55262 -9.81348 -9.05452 -5.38203 -4.91705 -3.49160 -1.59407 -1.31628 -1.03940 -0.65082 -0.25537 0.68625 0.85863 1.05745 1.38743 1.41483 1.56377 1.74932 1.94856 1.98006 2.27314 2.43418 2.75874 2.86255 3.00171 3.14594 3.17336 3.28731 3.45231 3.53886 3.58631 3.70171 3.81894 3.86589 3.94234 3.98749 4.13241 4.25070 4.27301 4.30307 4.32422 4.47507 4.65449 4.71158 4.72430 4.88947 4.95545 5.05056 5.15516 5.42581 5.50381 5.59172 5.85260 6.62227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.128 4.128 3 Si 0.984 3.016 4 H -0.212 1.212 5 H -0.234 1.234 6 H -0.278 1.278 7 C -0.067 4.067 8 C 0.044 3.956 9 O -0.641 6.641 10 S 2.672 3.328 11 O -0.950 6.950 12 O -0.931 6.931 13 C -0.651 4.651 14 C 0.013 3.987 15 C -0.035 4.035 16 C -0.042 4.042 17 C 0.318 3.682 18 F -0.201 7.201 19 F -0.153 7.153 20 F -0.171 7.171 21 F -0.145 7.145 22 F -0.172 7.172 23 C -0.029 4.029 24 C -0.055 4.055 25 C -0.156 4.156 26 C -0.084 4.084 27 C -0.110 4.110 28 C -0.077 4.077 29 C -0.051 4.051 30 C -0.037 4.037 31 C -0.137 4.137 32 H 0.394 0.606 33 H 0.099 0.901 34 H 0.212 0.788 35 H 0.251 0.749 36 H 0.213 0.787 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.186 0.814 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 14.236 13.878 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.235 4.235 3 Si 0.802 3.198 4 H -0.134 1.134 5 H -0.157 1.157 6 H -0.203 1.203 7 C -0.071 4.071 8 C 0.002 3.998 9 O -0.600 6.600 10 S 2.764 3.236 11 O -0.949 6.949 12 O -0.929 6.929 13 C -0.733 4.733 14 C -0.005 4.005 15 C -0.052 4.052 16 C -0.059 4.059 17 C 0.312 3.688 18 F -0.200 7.200 19 F -0.151 7.151 20 F -0.170 7.170 21 F -0.144 7.144 22 F -0.171 7.171 23 C -0.048 4.048 24 C -0.057 4.057 25 C -0.174 4.174 26 C -0.102 4.102 27 C -0.127 4.127 28 C -0.094 4.094 29 C -0.051 4.051 30 C -0.056 4.056 31 C -0.155 4.155 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.229 0.771 35 H 0.267 0.733 36 H 0.230 0.770 37 H 0.193 0.807 38 H 0.129 0.871 39 H 0.155 0.845 40 H 0.173 0.827 41 H 0.188 0.812 42 H 0.203 0.797 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.030 15.113 12.816 22.210 hybrid contribution -1.455 -3.094 -0.728 3.496 sum 8.575 12.020 12.088 19.082 Atomic orbital electron populations 1.86578 1.16599 1.82260 1.50278 1.25676 0.85812 1.14435 0.97588 0.85236 0.81272 0.71545 0.81729 1.13397 1.15711 1.20301 1.20415 0.96703 0.92137 0.97883 1.17783 1.05733 0.89690 0.86560 1.85782 1.56176 1.73246 1.44835 1.03071 0.72973 0.73824 0.73746 1.93667 1.71620 1.79997 1.49581 1.93644 1.66408 1.48137 1.84760 1.31629 1.15397 1.07754 1.18562 1.22235 0.87607 1.05282 0.85415 1.22461 1.01692 0.82869 0.98157 1.22781 0.90190 1.00524 0.92424 1.27409 0.96198 0.37920 1.07315 2.00000 1.54434 1.87319 1.78298 1.99918 1.27078 1.96655 1.91460 1.99921 1.46738 1.75500 1.94829 1.99918 1.64194 1.97247 1.53019 1.99922 1.78093 1.76861 1.62221 1.21169 1.01365 0.86104 0.96118 1.18054 1.00407 0.94222 0.93026 1.21080 1.02882 0.92841 1.00630 1.21183 0.95276 1.01434 0.92329 1.21293 0.98064 0.94412 0.98962 1.21509 0.96629 0.94959 0.96311 1.18196 0.99402 0.93869 0.93639 1.21751 0.93315 0.92820 0.97690 1.20985 1.00168 1.01635 0.92717 0.75584 0.88331 0.77102 0.73276 0.77020 0.80664 0.87106 0.84544 0.82745 0.81170 0.79670 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 919. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.77 12.88 -148.98 -1.92 -2.69 16 2 C -0.13 0.01 2.20 71.23 0.16 0.17 16 3 Si 0.98 -4.56 25.46 68.60 1.75 -2.81 16 4 H -0.21 2.14 6.70 99.48 0.67 2.81 16 5 H -0.23 1.24 7.11 99.48 0.71 1.95 16 6 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 7 C -0.07 0.21 4.69 -20.00 -0.09 0.12 16 8 C 0.04 -0.06 4.77 22.57 0.11 0.05 16 9 O -0.64 -2.08 8.82 -60.61 -0.53 -2.62 16 10 S 2.67 7.36 5.03 -56.49 -0.28 7.07 16 11 O -0.95 -10.85 17.27 -118.78 -2.05 -12.90 16 12 O -0.93 -1.45 13.81 -118.78 -1.64 -3.09 16 13 C -0.65 2.93 3.40 22.27 0.08 3.01 16 14 C 0.01 -0.17 7.18 22.27 0.16 -0.01 16 15 C -0.03 0.67 10.05 22.27 0.22 0.89 16 16 C -0.04 0.49 8.62 22.27 0.19 0.68 16 17 C 0.32 -0.02 4.82 22.27 0.11 0.08 16 18 F -0.20 -5.12 16.66 44.97 0.75 -4.38 16 19 F -0.15 -2.04 15.32 44.97 0.69 -1.35 16 20 F -0.17 -2.92 15.30 44.97 0.69 -2.23 16 21 F -0.15 -1.68 15.31 44.97 0.69 -0.99 16 22 F -0.17 -3.24 15.32 44.97 0.69 -2.55 16 23 C -0.03 0.00 7.25 22.27 0.16 0.16 16 24 C -0.06 0.34 5.05 -21.23 -0.11 0.23 16 25 C -0.16 1.03 6.63 22.31 0.15 1.17 16 26 C -0.08 0.90 9.95 22.05 0.22 1.12 16 27 C -0.11 1.60 9.95 22.04 0.22 1.82 16 28 C -0.08 1.19 9.77 22.34 0.22 1.41 16 29 C -0.05 0.58 5.74 -21.30 -0.12 0.46 16 30 C -0.04 0.52 9.77 22.35 0.22 0.74 16 31 C -0.14 1.38 8.55 22.02 0.19 1.57 16 32 H 0.39 -3.00 8.70 -74.06 -0.64 -3.65 16 33 H 0.10 0.31 5.48 -2.39 -0.01 0.30 16 34 H 0.21 -4.06 7.62 -2.91 -0.02 -4.08 16 35 H 0.25 -7.61 8.06 -2.92 -0.02 -7.63 16 36 H 0.21 -3.22 7.40 -2.91 -0.02 -3.24 16 37 H 0.18 0.67 6.96 -2.91 -0.02 0.65 16 38 H 0.11 -0.50 5.33 -2.91 -0.02 -0.51 16 39 H 0.14 -1.62 8.06 -2.91 -0.02 -1.64 16 40 H 0.15 -2.85 8.06 -2.91 -0.02 -2.87 16 41 H 0.17 -3.64 8.06 -2.91 -0.02 -3.67 16 42 H 0.19 -4.01 8.06 -2.91 -0.02 -4.04 16 43 H 0.16 -2.28 4.79 -2.91 -0.01 -2.30 16 Total: 0.00 -44.36 387.05 2.11 -42.25 By element: Atomic # 1 Polarization: -28.59 SS G_CDS: 1.21 Total: -27.38 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 2.07 Total: 13.67 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -6.15 Total: -21.31 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 3.50 Total: -11.50 kcal Atomic # 14 Polarization: -4.56 SS G_CDS: 1.75 Total: -2.81 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -0.28 Total: 7.07 kcal Total: -44.36 2.11 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_9043274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 375.705 kcal (2) G-P(sol) polarization free energy of solvation -44.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 331.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 333.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 51.02 seconds