Wall clock time and date at job start Mon Mar 8 2021 09:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00268 * 2 1 4 4 O 1.20833 * 119.99579 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00204 * 179.97438 * 3 2 1 6 6 H 1.08999 * 112.85411 * 311.19595 * 5 3 2 7 7 C 1.53957 * 113.66383 * 82.44003 * 5 3 2 8 8 C 1.53791 * 87.01839 * 139.93378 * 7 5 3 9 9 H 1.08999 * 113.61169 * 89.23091 * 8 7 5 10 10 S 1.81403 * 113.61296 * 220.05041 * 8 7 5 11 11 O 1.42098 * 110.54261 * 165.43467 * 10 8 7 12 12 O 1.42095 * 110.54347 * 28.68060 * 10 8 7 13 13 O 1.52205 * 104.44411 * 277.05631 * 10 8 7 14 14 C 1.35919 * 113.99947 * 76.13147 * 13 10 8 15 15 C 1.38715 * 120.03515 * 91.92314 * 14 13 10 16 16 C 1.50698 * 119.99664 * 359.97438 * 15 14 13 17 17 O 1.42906 * 109.46857 * 73.94113 * 16 15 14 18 18 Si 1.86291 * 109.47093 * 193.94271 * 16 15 14 19 19 C 1.38180 * 120.00345 * 180.25436 * 15 14 13 20 20 C 1.38293 * 120.06933 * 359.49065 * 19 15 14 21 21 Cl 1.73609 * 119.97163 * 180.23318 * 20 19 15 22 22 C 1.38612 * 120.06408 * 0.25563 * 20 19 15 23 23 F 1.35092 * 120.00984 * 179.97438 * 22 20 19 24 24 C 1.38332 * 119.99097 * 359.97438 * 22 20 19 25 25 C 1.53781 * 87.17065 * 334.63771 * 8 7 5 26 26 H 1.08999 * 109.47442 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47550 * 300.00657 * 1 2 3 28 28 H 1.09003 * 109.46801 * 60.00187 * 1 2 3 29 29 H 1.08997 * 113.61567 * 25.41776 * 7 5 3 30 30 H 1.08994 * 113.66675 * 254.45447 * 7 5 3 31 31 H 1.09003 * 109.47282 * 313.94174 * 16 15 14 32 32 H 0.96703 * 113.99474 * 185.00716 * 17 16 15 33 33 H 1.48503 * 109.99964 * 178.68483 * 18 16 15 34 34 H 1.48506 * 110.00200 * 299.99843 * 18 16 15 35 35 H 1.08001 * 119.96913 * 179.76494 * 19 15 14 36 36 H 1.07998 * 120.03405 * 180.02562 * 24 22 20 37 37 H 1.08997 * 113.61348 * 139.94091 * 25 8 7 38 38 H 1.09004 * 113.61472 * 270.75737 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0234 0.6365 0.7567 7 6 4.1937 1.1216 -1.3970 8 6 5.1815 2.2266 -0.9866 9 1 6.0816 1.8493 -0.5014 10 16 5.5398 3.4104 -2.3136 11 8 6.1744 4.5691 -1.7902 12 8 4.4332 3.5176 -3.1984 13 8 6.6206 2.7335 -3.1445 14 6 6.1585 1.7407 -3.9495 15 6 5.7819 2.0234 -5.2543 16 6 5.8846 3.4321 -5.7797 17 8 7.2569 3.7534 -6.0161 18 14 4.9307 3.5715 -7.3737 19 6 5.3072 1.0146 -6.0705 20 6 5.2168 -0.2796 -5.5914 21 17 4.6258 -1.5463 -6.6210 22 6 5.5973 -0.5663 -4.2897 23 9 5.5080 -1.8307 -3.8226 24 6 6.0684 0.4426 -3.4689 25 6 4.1078 2.7142 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.5270 1.4116 -2.2091 30 1 4.6657 0.1530 -1.5609 31 1 5.4704 4.1244 -5.0467 32 1 7.4056 4.6709 -6.2829 33 1 4.9977 4.9638 -7.8857 34 1 5.4857 2.6326 -8.3816 35 1 5.0107 1.2360 -7.0851 36 1 6.3654 0.2199 -2.4547 37 1 4.5105 3.0292 0.9631 38 1 3.4183 3.4414 -0.4284 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10548610_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:25:06 Heat of formation + Delta-G solvation = -188.349297 kcal Electronic energy + Delta-G solvation = -32513.999412 eV Core-core repulsion = 27587.084262 eV Total energy + Delta-G solvation = -4926.915150 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.031 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.36188 -42.72202 -41.96722 -39.81313 -39.67582 -38.46814 -38.11748 -37.59830 -37.39387 -37.32988 -33.19141 -31.78996 -30.00369 -27.92158 -27.45240 -27.13676 -25.31708 -23.57048 -23.44702 -21.95704 -20.97430 -20.19935 -19.54065 -19.19022 -18.81115 -18.63825 -18.20786 -18.09990 -17.66347 -17.38851 -17.16678 -17.05136 -16.92106 -16.16624 -16.09082 -15.67968 -15.43896 -14.84662 -14.75341 -14.62034 -14.55288 -14.23227 -14.06095 -14.01243 -13.93157 -13.85992 -13.61613 -13.51934 -13.36743 -13.32649 -13.18001 -12.86895 -12.82289 -12.58555 -12.22884 -12.14318 -11.95092 -11.86238 -11.77664 -11.37827 -10.66258 -10.56011 -10.06903 -5.06761 -1.41066 -0.62440 -0.59748 0.55949 0.71966 1.01559 1.06560 1.44322 1.56879 1.60946 1.78986 2.13314 2.35878 2.52140 2.66121 2.82716 2.91480 2.97083 3.09220 3.19481 3.32321 3.49015 3.53158 3.73783 3.87253 3.92658 4.01802 4.09456 4.11424 4.12477 4.19575 4.21524 4.26716 4.31039 4.36768 4.40890 4.55589 4.60697 4.68692 5.02431 5.27976 6.27436 6.60578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.094 4.094 6 H 0.139 0.861 7 C -0.104 4.104 8 C -0.651 4.651 9 H 0.169 0.831 10 S 2.592 3.408 11 O -0.911 6.911 12 O -0.936 6.936 13 O -0.649 6.649 14 C 0.127 3.873 15 C -0.037 4.037 16 C -0.094 4.094 17 O -0.529 6.529 18 Si 0.697 3.303 19 C -0.065 4.065 20 C -0.054 4.054 21 Cl -0.021 7.021 22 C 0.138 3.862 23 F -0.109 7.109 24 C -0.158 4.158 25 C -0.086 4.086 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.387 0.613 33 H -0.249 1.249 34 H -0.244 1.244 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 -3.423 0.748 4.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.114 4.114 6 H 0.157 0.843 7 C -0.142 4.142 8 C -0.758 4.758 9 H 0.186 0.814 10 S 2.687 3.313 11 O -0.910 6.910 12 O -0.935 6.935 13 O -0.607 6.607 14 C 0.085 3.915 15 C -0.040 4.040 16 C -0.203 4.203 17 O -0.337 6.337 18 Si 0.596 3.404 19 C -0.083 4.083 20 C -0.083 4.083 21 Cl 0.008 6.992 22 C 0.117 3.883 23 F -0.087 7.087 24 C -0.179 4.179 25 C -0.124 4.124 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.236 0.764 33 H -0.173 1.173 34 H -0.169 1.169 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.126 0.874 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.083 -3.053 -0.380 3.715 hybrid contribution 0.923 0.073 1.001 1.363 sum -1.160 -2.980 0.621 3.257 Atomic orbital electron populations 1.23368 0.75592 1.04181 1.02916 1.86505 1.23987 1.32936 1.83696 1.23408 0.91426 0.81714 0.72538 1.90716 1.66800 1.36363 1.44557 1.22437 0.88081 1.00055 1.00789 0.84328 1.22985 0.95816 0.98416 0.96945 1.32288 1.08401 1.16108 1.19008 0.81358 1.05771 0.73600 0.75893 0.76049 1.93685 1.73732 1.43351 1.80192 1.93664 1.54971 1.85575 1.59245 1.85760 1.59405 1.54681 1.60864 1.17343 0.99677 0.84833 0.89686 1.19341 0.97352 0.95614 0.91705 1.24996 0.89632 0.94014 1.11660 1.86585 1.22196 1.34450 1.90446 0.94731 0.88451 0.82379 0.74882 1.20878 0.97399 0.89119 1.00893 1.21037 1.03828 0.91939 0.91511 1.98452 1.85918 1.49173 1.65636 1.16805 1.00544 0.80246 0.90701 1.91636 1.93454 1.35308 1.88280 1.21249 1.03407 0.90428 1.02777 1.22622 0.93794 0.95972 1.00012 0.87703 0.91623 0.91505 0.86749 0.87577 0.89291 0.76398 1.17319 1.16901 0.81823 0.81393 0.87443 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.36 -0.06 10.56 -39.26 -0.41 -0.48 16 3 C 0.47 0.27 7.49 36.00 0.27 0.54 16 4 O -0.50 -1.78 15.65 -18.76 -0.29 -2.07 16 5 C -0.09 0.25 4.26 -90.87 -0.39 -0.14 16 6 H 0.14 -0.70 8.14 -51.93 -0.42 -1.13 16 7 C -0.10 0.35 5.27 -25.82 -0.14 0.21 16 8 C -0.65 2.00 3.76 -25.91 -0.10 1.91 16 9 H 0.17 -1.04 8.14 -51.93 -0.42 -1.46 16 10 S 2.59 1.92 4.94 -107.50 -0.53 1.39 16 11 O -0.91 -3.93 18.09 -67.04 -1.21 -5.15 16 12 O -0.94 -1.52 13.69 -67.04 -0.92 -2.44 16 13 O -0.65 -0.64 9.45 -51.81 -0.49 -1.13 16 14 C 0.13 0.05 4.64 -39.23 -0.18 -0.13 16 15 C -0.04 -0.03 4.75 -104.47 -0.50 -0.53 16 16 C -0.09 -0.08 2.23 36.00 0.08 0.01 16 17 O -0.53 -0.71 12.79 -35.23 -0.45 -1.16 16 18 Si 0.70 -0.71 30.22 -169.99 -5.14 -5.85 16 19 C -0.06 0.04 8.44 -39.58 -0.33 -0.30 16 20 C -0.05 0.03 6.33 -39.42 -0.25 -0.22 16 21 Cl -0.02 0.01 28.61 -51.86 -1.48 -1.48 16 22 C 0.14 -0.14 7.27 -39.41 -0.29 -0.43 16 23 F -0.11 0.07 16.83 2.25 0.04 0.11 16 24 C -0.16 0.29 6.92 -39.37 -0.27 0.02 16 25 C -0.09 0.19 6.99 -25.92 -0.18 0.01 16 26 H 0.10 -0.39 8.14 -51.93 -0.42 -0.82 16 27 H 0.07 -0.09 8.13 -51.93 -0.42 -0.51 16 28 H 0.07 -0.09 8.13 -51.93 -0.42 -0.52 16 29 H 0.11 -0.32 7.37 -51.93 -0.38 -0.70 16 30 H 0.11 -0.59 6.17 -51.93 -0.32 -0.91 16 31 H 0.09 0.06 5.73 -51.93 -0.30 -0.23 16 32 H 0.39 -1.02 8.86 45.56 0.40 -0.62 16 33 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 34 H -0.24 -0.07 6.79 56.52 0.38 0.31 16 35 H 0.16 -0.35 4.88 -52.49 -0.26 -0.61 16 36 H 0.17 -0.86 6.58 -52.49 -0.35 -1.21 16 37 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 38 H 0.11 -0.12 7.40 -51.93 -0.38 -0.51 16 LS Contribution 349.46 15.07 5.27 5.27 Total: 0.00 -10.37 349.46 -10.17 -20.54 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -3.33 Total: -9.52 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.21 Total: 1.97 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -3.78 Total: -12.42 kcal Atomic # 9 Polarization: 0.07 SS G_CDS: 0.04 Total: 0.11 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.14 Total: -5.85 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -0.53 Total: 1.39 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.48 Total: -1.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -10.37 -10.17 -20.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.813 kcal (2) G-P(sol) polarization free energy of solvation -10.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds