Wall clock time and date at job start Mon Mar 8 2021 09:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00268 * 2 1 4 4 O 1.20833 * 119.99579 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00204 * 179.97438 * 3 2 1 6 6 H 1.08999 * 112.85411 * 311.19595 * 5 3 2 7 7 C 1.53957 * 113.66383 * 82.44003 * 5 3 2 8 8 C 1.53791 * 87.01839 * 139.93378 * 7 5 3 9 9 H 1.08999 * 113.61169 * 89.23091 * 8 7 5 10 10 S 1.81403 * 113.61296 * 220.05041 * 8 7 5 11 11 O 1.42098 * 110.54261 * 165.43467 * 10 8 7 12 12 O 1.42095 * 110.54347 * 28.68060 * 10 8 7 13 13 O 1.52205 * 104.44411 * 277.05631 * 10 8 7 14 14 C 1.35919 * 113.99947 * 76.13147 * 13 10 8 15 15 C 1.38715 * 120.03515 * 91.92314 * 14 13 10 16 16 C 1.50698 * 119.99664 * 359.97438 * 15 14 13 17 17 O 1.42906 * 109.46857 * 73.94113 * 16 15 14 18 18 Si 1.86291 * 109.47093 * 193.94271 * 16 15 14 19 19 C 1.38180 * 120.00345 * 180.25436 * 15 14 13 20 20 C 1.38293 * 120.06933 * 359.49065 * 19 15 14 21 21 Cl 1.73609 * 119.97163 * 180.23318 * 20 19 15 22 22 C 1.38612 * 120.06408 * 0.25563 * 20 19 15 23 23 F 1.35092 * 120.00984 * 179.97438 * 22 20 19 24 24 C 1.38332 * 119.99097 * 359.97438 * 22 20 19 25 25 C 1.53781 * 87.17065 * 334.63771 * 8 7 5 26 26 H 1.08999 * 109.47442 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47550 * 300.00657 * 1 2 3 28 28 H 1.09003 * 109.46801 * 60.00187 * 1 2 3 29 29 H 1.08997 * 113.61567 * 25.41776 * 7 5 3 30 30 H 1.08994 * 113.66675 * 254.45447 * 7 5 3 31 31 H 1.09003 * 109.47282 * 313.94174 * 16 15 14 32 32 H 0.96703 * 113.99474 * 185.00716 * 17 16 15 33 33 H 1.48503 * 109.99964 * 178.68483 * 18 16 15 34 34 H 1.48506 * 110.00200 * 299.99843 * 18 16 15 35 35 H 1.08001 * 119.96913 * 179.76494 * 19 15 14 36 36 H 1.07998 * 120.03405 * 180.02562 * 24 22 20 37 37 H 1.08997 * 113.61348 * 139.94091 * 25 8 7 38 38 H 1.09004 * 113.61472 * 270.75737 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0234 0.6365 0.7567 7 6 4.1937 1.1216 -1.3970 8 6 5.1815 2.2266 -0.9866 9 1 6.0816 1.8493 -0.5014 10 16 5.5398 3.4104 -2.3136 11 8 6.1744 4.5691 -1.7902 12 8 4.4332 3.5176 -3.1984 13 8 6.6206 2.7335 -3.1445 14 6 6.1585 1.7407 -3.9495 15 6 5.7819 2.0234 -5.2543 16 6 5.8846 3.4321 -5.7797 17 8 7.2569 3.7534 -6.0161 18 14 4.9307 3.5715 -7.3737 19 6 5.3072 1.0146 -6.0705 20 6 5.2168 -0.2796 -5.5914 21 17 4.6258 -1.5463 -6.6210 22 6 5.5973 -0.5663 -4.2897 23 9 5.5080 -1.8307 -3.8226 24 6 6.0684 0.4426 -3.4689 25 6 4.1078 2.7142 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.5270 1.4116 -2.2091 30 1 4.6657 0.1530 -1.5609 31 1 5.4704 4.1244 -5.0467 32 1 7.4056 4.6709 -6.2829 33 1 4.9977 4.9638 -7.8857 34 1 5.4857 2.6326 -8.3816 35 1 5.0107 1.2360 -7.0851 36 1 6.3654 0.2199 -2.4547 37 1 4.5105 3.0292 0.9631 38 1 3.4183 3.4414 -0.4284 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10548610_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:25:05 Heat of formation + Delta-G solvation = -189.825651 kcal Electronic energy + Delta-G solvation = -32514.063432 eV Core-core repulsion = 27587.084262 eV Total energy + Delta-G solvation = -4926.979170 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.031 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.27074 -42.67947 -41.91603 -39.72946 -39.57232 -38.54687 -38.12272 -37.58930 -37.44045 -37.38265 -33.11761 -31.72196 -29.88766 -27.77167 -27.23529 -27.09230 -25.23575 -23.51620 -23.39631 -21.92124 -20.80719 -20.14838 -19.48394 -19.18571 -18.77294 -18.65647 -18.18835 -18.04370 -17.59015 -17.34518 -17.06734 -16.98851 -16.76953 -16.15524 -16.05158 -15.62064 -15.36880 -14.76629 -14.73634 -14.57692 -14.49336 -14.09999 -14.02741 -13.96369 -13.87535 -13.78533 -13.64686 -13.46115 -13.42648 -13.29525 -13.02073 -12.79544 -12.76232 -12.53605 -12.17000 -11.98516 -11.88816 -11.83804 -11.64165 -11.33885 -10.67754 -10.45896 -10.01642 -5.01626 -1.38225 -0.56878 -0.50559 0.61408 0.75881 1.03210 1.09501 1.47425 1.67798 1.69329 1.80028 2.21845 2.44842 2.61269 2.86511 2.90051 3.01874 3.17855 3.22787 3.27069 3.52527 3.61627 3.63584 3.89793 3.99843 4.07392 4.19728 4.28594 4.30570 4.31118 4.33368 4.37679 4.41074 4.45602 4.56614 4.67376 4.69916 4.72584 4.94359 5.11914 5.33143 6.39362 6.62380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.537 6.537 5 C -0.087 4.087 6 H 0.175 0.825 7 C -0.108 4.108 8 C -0.622 4.622 9 H 0.211 0.789 10 S 2.582 3.418 11 O -0.960 6.960 12 O -0.956 6.956 13 O -0.655 6.655 14 C 0.110 3.890 15 C -0.057 4.057 16 C -0.114 4.114 17 O -0.548 6.548 18 Si 0.763 3.237 19 C -0.067 4.067 20 C -0.058 4.058 21 Cl -0.024 7.024 22 C 0.138 3.862 23 F -0.108 7.108 24 C -0.145 4.145 25 C -0.101 4.101 26 H 0.129 0.871 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.082 0.918 32 H 0.399 0.601 33 H -0.275 1.275 34 H -0.259 1.259 35 H 0.174 0.826 36 H 0.206 0.794 37 H 0.127 0.873 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -5.526 1.799 6.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.307 3.693 4 O -0.427 6.427 5 C -0.107 4.107 6 H 0.192 0.808 7 C -0.146 4.146 8 C -0.733 4.733 9 H 0.228 0.772 10 S 2.682 3.318 11 O -0.958 6.958 12 O -0.955 6.955 13 O -0.614 6.614 14 C 0.068 3.932 15 C -0.060 4.060 16 C -0.221 4.221 17 O -0.358 6.358 18 Si 0.663 3.337 19 C -0.085 4.085 20 C -0.087 4.087 21 Cl 0.005 6.995 22 C 0.118 3.882 23 F -0.086 7.086 24 C -0.165 4.165 25 C -0.139 4.139 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.156 0.844 31 H 0.100 0.900 32 H 0.250 0.750 33 H -0.201 1.201 34 H -0.185 1.185 35 H 0.191 0.809 36 H 0.223 0.777 37 H 0.145 0.855 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.627 -5.132 0.648 5.423 hybrid contribution 0.745 0.694 0.702 1.237 sum -0.882 -4.438 1.351 4.722 Atomic orbital electron populations 1.23548 0.75036 1.05680 1.02491 1.86508 1.24703 1.32756 1.83364 1.24112 0.92728 0.81200 0.71230 1.90703 1.67934 1.37566 1.46473 1.22626 0.85822 1.00129 1.02081 0.80812 1.23164 0.95541 0.99555 0.96376 1.32164 1.09998 1.14431 1.16693 0.77182 1.05870 0.72933 0.76306 0.76704 1.93623 1.74672 1.46567 1.80943 1.93628 1.55198 1.86165 1.60484 1.85727 1.59331 1.55072 1.61228 1.17590 1.00402 0.85526 0.89687 1.19528 0.98210 0.95773 0.92512 1.25308 0.89590 0.94327 1.12871 1.86534 1.22857 1.35739 1.90670 0.93931 0.87318 0.79910 0.72494 1.20938 0.97317 0.88970 1.01247 1.21126 1.03892 0.91794 0.91867 1.98450 1.85979 1.49223 1.65850 1.16825 1.00489 0.80386 0.90535 1.91642 1.93458 1.35300 1.88218 1.21528 1.01833 0.88974 1.04191 1.22774 0.93874 0.96257 1.01009 0.85257 0.92041 0.92036 0.87745 0.84438 0.89989 0.74966 1.20088 1.18458 0.80881 0.77745 0.85456 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.12 16 2 O -0.36 0.16 10.56 -51.42 -0.54 -0.39 16 3 C 0.46 0.37 7.49 71.23 0.53 0.90 16 4 O -0.54 -4.40 15.65 21.94 0.34 -4.06 16 5 C -0.09 0.64 4.26 -10.95 -0.05 0.59 16 6 H 0.17 -2.48 8.14 -2.39 -0.02 -2.50 16 7 C -0.11 0.95 5.27 31.18 0.16 1.12 16 8 C -0.62 4.94 3.76 31.12 0.12 5.06 16 9 H 0.21 -3.45 8.14 -2.39 -0.02 -3.47 16 10 S 2.58 5.87 4.94 -56.49 -0.28 5.59 16 11 O -0.96 -10.08 18.09 -118.57 -2.15 -12.23 16 12 O -0.96 -4.79 13.69 -118.57 -1.62 -6.42 16 13 O -0.66 -1.54 9.45 -61.73 -0.58 -2.13 16 14 C 0.11 0.06 4.64 22.50 0.10 0.17 16 15 C -0.06 -0.13 4.75 -19.76 -0.09 -0.22 16 16 C -0.11 -0.35 2.23 71.24 0.16 -0.19 16 17 O -0.55 -2.35 12.79 -148.98 -1.91 -4.25 16 18 Si 0.76 -0.74 30.22 68.60 2.07 1.34 16 19 C -0.07 0.06 8.44 22.27 0.19 0.24 16 20 C -0.06 0.09 6.33 22.37 0.14 0.23 16 21 Cl -0.02 0.02 28.61 -2.72 -0.08 -0.05 16 22 C 0.14 -0.48 7.27 22.38 0.16 -0.31 16 23 F -0.11 0.35 16.83 44.97 0.76 1.10 16 24 C -0.14 0.79 6.92 22.41 0.16 0.94 16 25 C -0.10 0.55 6.99 31.12 0.22 0.76 16 26 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 27 H 0.06 -0.14 8.13 -2.39 -0.02 -0.16 16 28 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 29 H 0.10 -0.64 7.37 -2.39 -0.02 -0.65 16 30 H 0.14 -2.07 6.17 -2.39 -0.01 -2.08 16 31 H 0.08 0.32 5.73 -2.39 -0.01 0.30 16 32 H 0.40 -1.35 8.86 -74.06 -0.66 -2.00 16 33 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16 34 H -0.26 -0.31 6.79 99.48 0.68 0.36 16 35 H 0.17 -0.66 4.88 -2.91 -0.01 -0.68 16 36 H 0.21 -2.87 6.58 -2.91 -0.02 -2.89 16 37 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 38 H 0.09 -0.09 7.40 -2.38 -0.02 -0.11 16 Total: 0.00 -27.08 349.46 -0.47 -27.55 By element: Atomic # 1 Polarization: -16.98 SS G_CDS: 0.51 Total: -16.47 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 3.00 Total: 10.41 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -6.46 Total: -29.47 kcal Atomic # 9 Polarization: 0.35 SS G_CDS: 0.76 Total: 1.10 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.07 Total: 1.34 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -0.28 Total: 5.59 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.05 kcal Total: -27.08 -0.47 -27.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.277 kcal (2) G-P(sol) polarization free energy of solvation -27.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds