Wall clock time and date at job start Mon Mar 8 2021 11:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.47005 * 2 1 4 4 C 1.86305 * 109.47104 * 240.00446 * 2 1 3 5 5 C 1.86293 * 109.47317 * 120.00198 * 2 1 3 6 6 C 1.52997 * 109.47155 * 59.99702 * 5 2 1 7 7 C 1.52998 * 109.47275 * 179.97438 * 6 5 2 8 8 S 1.81401 * 109.47224 * 180.02562 * 7 6 5 9 9 O 1.42103 * 110.53922 * 70.30999 * 8 7 6 10 10 O 1.42090 * 110.54538 * 293.56008 * 8 7 6 11 11 O 1.52203 * 104.45070 * 181.92984 * 8 7 6 12 12 C 1.35923 * 113.99367 * 73.58049 * 11 8 7 13 13 C 1.38671 * 120.03328 * 80.46687 * 12 11 8 14 14 C 1.38365 * 119.93117 * 180.02562 * 13 12 11 15 15 F 1.35108 * 119.99976 * 180.02562 * 14 13 12 16 16 C 1.38569 * 119.99966 * 359.97438 * 14 13 12 17 17 Cl 1.73599 * 119.97175 * 179.97438 * 16 14 13 18 18 C 1.38342 * 120.05733 * 0.02562 * 16 14 13 19 19 C 1.38140 * 120.06932 * 359.97438 * 18 16 14 20 20 C 1.50696 * 119.99642 * 179.97438 * 19 18 16 21 21 O 1.42911 * 109.46749 * 102.45060 * 20 19 18 22 22 Si 1.86293 * 109.47565 * 342.45225 * 20 19 18 23 23 H 1.48502 * 109.47238 * 59.99300 * 22 20 19 24 24 H 1.48500 * 109.47439 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46758 * 299.99783 * 22 20 19 26 26 H 1.08995 * 109.47236 * 300.00053 * 1 2 3 27 27 H 1.09006 * 109.46933 * 59.99483 * 1 2 3 28 28 H 1.08995 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47507 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47641 * 299.99878 * 3 2 1 31 31 H 1.09005 * 109.47018 * 60.00439 * 3 2 1 32 32 H 1.08994 * 109.46905 * 299.99465 * 4 2 1 33 33 H 1.08997 * 109.47336 * 60.00249 * 4 2 1 34 34 H 1.09001 * 109.46664 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47274 * 299.99908 * 5 2 1 36 36 H 1.08993 * 109.47473 * 180.02562 * 5 2 1 37 37 H 1.09005 * 109.47096 * 60.00453 * 6 5 2 38 38 H 1.08993 * 109.47478 * 300.00668 * 6 5 2 39 39 H 1.09005 * 109.47102 * 60.00238 * 7 6 5 40 40 H 1.08995 * 109.47318 * 300.00275 * 7 6 5 41 41 H 1.07999 * 120.03274 * 0.03745 * 13 12 11 42 42 H 1.07999 * 119.96341 * 179.72297 * 18 16 14 43 43 H 1.09000 * 109.47530 * 222.44688 * 20 19 18 44 44 H 0.96695 * 113.99587 * 59.99702 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4841 -0.8782 1.5210 6 6 1.9740 -2.3207 1.5210 7 6 2.4846 -3.0422 2.7699 8 16 1.8805 -4.7527 2.7695 9 8 2.5259 -5.5091 1.7544 10 8 0.4678 -4.7826 2.9191 11 8 2.4083 -5.3422 4.0697 12 6 1.7612 -4.8997 5.1800 13 6 0.5427 -5.4548 5.5407 14 6 -0.1145 -5.0024 6.6712 15 9 -1.3015 -5.5426 7.0242 16 6 0.4452 -3.9959 7.4418 17 17 -0.3803 -3.4284 8.8596 18 6 1.6608 -3.4423 7.0818 19 6 2.3192 -3.8920 5.9537 20 6 3.6430 -3.2874 5.5627 21 8 4.7001 -4.1747 5.9337 22 14 3.8643 -1.6578 6.4379 23 1 3.8344 -1.8765 7.9064 24 1 5.1691 -1.0623 6.0531 25 1 2.7659 -0.7358 6.0524 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7566 0.0005 30 1 2.1207 2.2704 -0.8899 31 1 2.1207 2.2703 0.8901 32 1 2.1208 -1.9058 -1.5212 33 1 2.1208 -0.3642 -2.4112 34 1 3.5740 -0.8777 -1.5214 35 1 2.1207 -0.3644 2.4111 36 1 3.5740 -0.8779 1.5213 37 1 2.3374 -2.8346 0.6310 38 1 0.8841 -2.3207 1.5210 39 1 2.1216 -2.5285 3.6602 40 1 3.5745 -3.0422 2.7694 41 1 0.1072 -6.2396 4.9400 42 1 2.0936 -2.6549 7.6810 43 1 3.6650 -3.1268 4.4848 44 1 4.6486 -5.0445 5.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10548610_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:06:45 Heat of formation + Delta-G solvation = -197.896647 kcal Electronic energy + Delta-G solvation = -30380.196207 eV Core-core repulsion = 25910.939377 eV Total energy + Delta-G solvation = -4469.256830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 384.063 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -50.35264 -42.78296 -39.78313 -38.58292 -38.13211 -37.46866 -37.41728 -35.91596 -33.02310 -31.75083 -29.63089 -28.56068 -28.28144 -28.25736 -26.99879 -25.42656 -23.59235 -23.04829 -21.79602 -20.07142 -19.28807 -19.13108 -18.70441 -18.03821 -17.89999 -17.29055 -17.09983 -16.63646 -16.31791 -15.92729 -15.75019 -15.58751 -15.02081 -14.81644 -14.61892 -14.24456 -14.09980 -14.06412 -14.00783 -13.95867 -13.91744 -13.59841 -13.55119 -13.52463 -13.42992 -13.35174 -13.13720 -13.04027 -13.00182 -12.95217 -12.65469 -12.41488 -12.16575 -11.96044 -11.90572 -11.78256 -11.62177 -11.15622 -10.68717 -10.65507 -10.53500 -10.40970 -10.10984 -1.41409 -0.66376 -0.52160 0.55452 0.71358 1.00448 1.46051 1.48259 1.64487 1.93933 1.95009 2.03426 2.03783 2.35583 2.47653 2.68284 2.75923 2.96165 3.12370 3.20430 3.49864 3.58799 3.67379 3.71140 3.87074 4.03330 4.18605 4.25927 4.29942 4.38130 4.43969 4.52047 4.62830 4.80732 4.83776 4.85915 4.89483 4.89686 4.90054 4.91690 5.03790 5.13770 5.49771 5.63152 5.69549 5.69635 6.49183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.068 2.932 3 C -0.465 4.465 4 C -0.475 4.475 5 C -0.413 4.413 6 C -0.119 4.119 7 C -0.644 4.644 8 S 2.573 3.427 9 O -0.954 6.954 10 O -0.969 6.969 11 O -0.657 6.657 12 C 0.102 3.898 13 C -0.121 4.121 14 C 0.126 3.874 15 F -0.118 7.118 16 C -0.054 4.054 17 Cl -0.025 7.025 18 C -0.068 4.068 19 C -0.105 4.105 20 C -0.119 4.119 21 O -0.536 6.536 22 Si 0.992 3.008 23 H -0.247 1.247 24 H -0.253 1.253 25 H -0.207 1.207 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.163 0.837 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.106 0.894 44 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 5.949 0.799 6.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.261 2.739 3 C -0.571 4.571 4 C -0.581 4.581 5 C -0.499 4.499 6 C -0.157 4.157 7 C -0.775 4.775 8 S 2.674 3.326 9 O -0.952 6.952 10 O -0.967 6.967 11 O -0.615 6.615 12 C 0.060 3.940 13 C -0.142 4.142 14 C 0.106 3.894 15 F -0.096 7.096 16 C -0.083 4.083 17 Cl 0.005 6.995 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.225 4.225 21 O -0.343 6.343 22 Si 0.808 3.192 23 H -0.171 1.171 24 H -0.177 1.177 25 H -0.129 1.129 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.181 0.819 40 H 0.195 0.805 41 H 0.187 0.813 42 H 0.197 0.803 43 H 0.123 0.877 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.460 6.435 1.475 7.046 hybrid contribution -0.508 -1.161 -0.634 1.417 sum 1.953 5.274 0.842 5.686 Atomic orbital electron populations 1.26447 1.22803 1.04377 1.04390 0.78302 0.64947 0.65382 0.65310 1.26297 1.06517 1.19987 1.04305 1.26453 1.06674 1.08385 1.16559 1.26222 1.07627 0.99237 1.16862 1.21236 1.02582 0.97824 0.94100 1.31171 1.15659 1.20171 1.10475 1.06069 0.74394 0.78925 0.73241 1.93640 1.76903 1.69426 1.55276 1.93645 1.32205 1.87172 1.83702 1.85735 1.70152 1.75432 1.30226 1.17514 0.91756 0.97062 0.87685 1.21450 0.94478 1.01941 0.96310 1.17058 0.83444 0.94520 0.94422 1.91612 1.42581 1.84279 1.91164 1.21205 0.96191 0.98065 0.92815 1.98451 1.77535 1.87574 1.35965 1.21092 0.91800 1.00244 0.95525 1.20567 0.98710 0.96199 0.95331 1.26115 0.83440 1.05193 1.07779 1.86734 1.45968 1.28745 1.72899 0.84800 0.82872 0.71673 0.79809 1.17111 1.17685 1.12886 0.90939 0.91843 0.91364 0.91028 0.91918 0.90991 0.91364 0.91836 0.90958 0.88231 0.88162 0.89299 0.89156 0.81871 0.80474 0.81298 0.80308 0.87697 0.76562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.31 8.65 113.37 0.98 3.29 16 2 Si 1.07 -9.34 12.19 68.60 0.84 -8.51 16 3 C -0.46 2.81 8.65 113.37 0.98 3.79 16 4 C -0.48 2.26 8.65 113.37 0.98 3.24 16 5 C -0.41 4.36 4.45 71.98 0.32 4.68 16 6 C -0.12 0.92 4.59 30.59 0.14 1.06 16 7 C -0.64 5.47 4.00 71.98 0.29 5.76 16 8 S 2.57 1.37 5.16 -56.49 -0.29 1.08 16 9 O -0.95 -7.61 18.09 -118.57 -2.15 -9.75 16 10 O -0.97 -4.94 15.67 -118.57 -1.86 -6.80 16 11 O -0.66 0.49 9.25 -61.78 -0.57 -0.09 16 12 C 0.10 -0.09 4.90 22.50 0.11 0.02 16 13 C -0.12 -0.15 8.51 22.40 0.19 0.04 16 14 C 0.13 0.22 7.27 22.38 0.16 0.38 16 15 F -0.12 -0.50 16.83 44.97 0.76 0.25 16 16 C -0.05 0.03 6.33 22.37 0.14 0.17 16 17 Cl -0.02 0.00 28.61 -2.72 -0.08 -0.08 16 18 C -0.07 0.26 8.44 22.27 0.19 0.45 16 19 C -0.10 0.41 4.57 -19.76 -0.09 0.32 16 20 C -0.12 0.76 1.93 71.23 0.14 0.89 16 21 O -0.54 2.05 12.65 -148.98 -1.89 0.16 16 22 Si 0.99 -6.75 25.85 68.60 1.77 -4.97 16 23 H -0.25 1.31 6.65 99.48 0.66 1.97 16 24 H -0.25 1.09 7.11 99.48 0.71 1.80 16 25 H -0.21 2.23 7.11 99.48 0.71 2.94 16 26 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 27 H 0.06 -0.22 7.96 -2.38 -0.02 -0.24 16 28 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 29 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 30 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 32 H 0.07 -0.30 7.79 -2.39 -0.02 -0.31 16 33 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 35 H 0.10 -1.30 7.96 -2.38 -0.02 -1.32 16 36 H 0.10 -1.30 7.96 -2.39 -0.02 -1.32 16 37 H 0.09 -0.75 7.79 -2.38 -0.02 -0.77 16 38 H 0.09 -0.78 7.79 -2.39 -0.02 -0.79 16 39 H 0.16 -2.17 6.45 -2.39 -0.02 -2.18 16 40 H 0.18 -2.53 6.98 -2.39 -0.02 -2.55 16 41 H 0.17 0.13 7.80 -2.91 -0.02 0.11 16 42 H 0.18 -1.36 4.92 -2.91 -0.01 -1.38 16 43 H 0.11 -1.20 3.35 -2.39 -0.01 -1.21 16 44 H 0.38 -2.93 8.92 -74.06 -0.66 -3.59 16 Total: 0.00 -18.21 387.38 2.16 -16.05 By element: Atomic # 1 Polarization: -12.53 SS G_CDS: 1.09 Total: -11.44 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 4.53 Total: 24.09 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -6.46 Total: -16.47 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 0.76 Total: 0.25 kcal Atomic # 14 Polarization: -16.09 SS G_CDS: 2.61 Total: -13.48 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -0.29 Total: 1.08 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -18.21 2.16 -16.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.849 kcal (2) G-P(sol) polarization free energy of solvation -18.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds