Wall clock time and date at job start Mon Mar 8 2021 08:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47029 * 2 1 4 4 C 1.50699 * 109.47222 * 119.99951 * 2 1 3 5 5 C 1.38706 * 119.99581 * 75.00088 * 4 2 1 6 6 O 1.35921 * 120.03321 * 359.97438 * 5 4 2 7 7 S 1.52200 * 113.99862 * 89.99796 * 6 5 4 8 8 O 1.42097 * 104.28078 * 318.93013 * 7 6 5 9 9 O 1.42099 * 104.27691 * 191.07224 * 7 6 5 10 10 C 1.81406 * 104.44879 * 75.00231 * 7 6 5 11 11 H 1.09007 * 112.84975 * 53.80124 * 10 7 6 12 12 C 1.53783 * 113.61389 * 184.99981 * 10 7 6 13 13 C 1.53777 * 87.07939 * 139.97992 * 12 10 7 14 14 H 1.08997 * 113.61338 * 219.93250 * 13 12 10 15 15 O 1.42901 * 113.61283 * 89.11693 * 13 12 10 16 16 C 1.42905 * 114.00134 * 151.52697 * 15 13 12 17 17 C 1.50703 * 109.47264 * 179.97438 * 16 15 13 18 18 C 1.38237 * 119.99944 * 269.72694 * 17 16 15 19 19 C 1.38237 * 119.99768 * 179.78788 * 18 17 16 20 20 C 1.38232 * 119.99839 * 0.44105 * 19 18 17 21 21 C 1.38236 * 120.00279 * 359.81168 * 20 19 18 22 22 C 1.38227 * 119.99868 * 90.00146 * 17 16 15 23 23 C 1.53776 * 87.17366 * 334.52531 * 13 12 10 24 24 C 1.38719 * 119.93935 * 180.24984 * 5 4 2 25 25 C 1.38336 * 119.92718 * 359.45591 * 24 5 4 26 26 F 1.35102 * 119.99919 * 180.25203 * 25 24 5 27 27 C 1.38609 * 119.99660 * 0.54148 * 25 24 5 28 28 Cl 1.73596 * 119.96777 * 179.70419 * 27 25 24 29 29 C 1.38190 * 119.99789 * 254.98108 * 4 2 1 30 30 H 0.96705 * 114.00000 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47039 * 240.00288 * 2 1 3 32 32 H 1.48497 * 110.00066 * 58.68137 * 3 2 1 33 33 H 1.48503 * 110.00222 * 179.97438 * 3 2 1 34 34 H 1.09003 * 113.61394 * 25.42894 * 12 10 7 35 35 H 1.09009 * 113.68678 * 254.54307 * 12 10 7 36 36 H 1.09001 * 109.47103 * 300.00246 * 16 15 13 37 37 H 1.09004 * 109.47054 * 59.99750 * 16 15 13 38 38 H 1.08000 * 119.99953 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.99755 * 180.27437 * 19 18 17 40 40 H 1.08001 * 119.99982 * 179.83262 * 20 19 18 41 41 H 1.07997 * 120.00219 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.00195 * 359.97438 * 22 17 16 43 43 H 1.09005 * 113.61632 * 140.02642 * 23 13 12 44 44 H 1.09003 * 113.61463 * 270.92030 * 23 13 12 45 45 H 1.08000 * 120.03725 * 179.70153 * 24 5 4 46 46 H 1.07999 * 119.96756 * 359.97438 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8694 -2.0940 1.3062 6 8 1.3553 -2.8096 0.2713 7 16 2.3871 -3.2233 -0.7682 8 8 3.2167 -2.0789 -0.9134 9 8 1.6130 -3.7097 -1.8560 10 6 3.3030 -4.5780 0.0172 11 1 2.6530 -5.3761 0.3762 12 6 4.4937 -5.0809 -0.8159 13 6 5.2716 -5.1895 0.5061 14 1 6.3110 -4.8707 0.4285 15 8 5.1263 -6.4552 1.1535 16 6 6.2473 -6.8292 1.9570 17 6 5.9867 -8.1723 2.5889 18 6 5.3752 -8.2470 3.8264 19 6 5.1322 -9.4792 4.4040 20 6 5.5089 -10.6363 3.7482 21 6 6.1250 -10.5614 2.5130 22 6 6.3642 -9.3293 1.9335 23 6 4.3338 -4.1035 1.0590 24 6 2.3274 -2.7464 2.4416 25 6 2.8554 -2.0164 3.4913 26 9 3.3065 -2.6506 4.5956 27 6 2.9160 -0.6338 3.4126 28 17 3.5716 0.2820 4.7336 29 6 2.4541 0.0167 2.2830 30 1 -0.3933 -0.8834 -0.0004 31 1 1.7923 -0.5138 -0.8900 32 1 1.5354 2.4771 1.1921 33 1 3.5349 1.7702 0.0006 34 1 4.8957 -4.3327 -1.4990 35 1 4.3158 -6.0422 -1.2982 36 1 7.1386 -6.8879 1.3324 37 1 6.3993 -6.0840 2.7379 38 1 5.0839 -7.3428 4.3403 39 1 4.6505 -9.5377 5.3688 40 1 5.3215 -11.5989 4.2006 41 1 6.4197 -11.4654 2.0008 42 1 6.8455 -9.2708 0.9684 43 1 4.0257 -4.2762 2.0903 44 1 4.6923 -3.0885 0.8877 45 1 2.2754 -3.8233 2.5042 46 1 2.5027 1.0939 2.2230 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10548610_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:08:08 Heat of formation + Delta-G solvation = -123.622252 kcal Electronic energy + Delta-G solvation = -38386.761908 eV Core-core repulsion = 33085.582066 eV Total energy + Delta-G solvation = -5301.179843 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.062 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.42616 -42.86347 -41.00745 -40.10301 -39.81013 -38.53339 -38.10466 -37.61119 -37.35778 -37.17106 -33.15120 -32.79930 -31.90903 -31.81506 -27.77347 -27.41226 -27.12351 -26.68728 -25.31264 -23.68082 -23.59946 -22.41095 -22.25054 -21.33551 -20.18665 -19.56405 -19.19978 -18.68481 -18.53753 -17.99838 -17.83293 -17.68416 -17.32536 -17.11442 -16.83616 -16.74154 -16.41895 -16.24396 -15.93972 -15.72757 -15.54228 -15.45661 -14.92781 -14.74803 -14.55856 -14.42691 -14.33777 -14.19765 -14.13460 -14.06738 -13.83201 -13.74307 -13.70091 -13.53052 -13.44535 -13.33668 -13.29220 -12.74956 -12.46793 -12.37603 -12.24741 -12.17871 -12.02988 -11.94756 -11.62134 -11.45059 -11.20062 -10.87566 -10.55169 -10.14939 -9.92184 -9.87396 -4.92813 -1.44036 -0.69290 -0.66549 0.21922 0.40194 0.47553 0.64497 1.21337 1.52011 1.64647 1.79194 2.15473 2.19927 2.40532 2.44560 2.78207 2.88914 2.91930 2.97407 3.00474 3.17741 3.22271 3.44525 3.55198 3.65316 3.73174 3.76032 3.82460 3.92307 3.99953 4.03640 4.07562 4.13684 4.13999 4.16793 4.20172 4.22544 4.27384 4.32015 4.45560 4.51280 4.52430 4.56367 4.60660 4.63102 4.94477 4.94855 5.02164 5.43890 5.52073 5.53480 5.92573 5.97888 6.37270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.103 4.103 3 Si 0.756 3.244 4 C -0.075 4.075 5 C 0.112 3.888 6 O -0.658 6.658 7 S 2.586 3.414 8 O -0.941 6.941 9 O -0.913 6.913 10 C -0.634 4.634 11 H 0.164 0.836 12 C -0.107 4.107 13 C 0.082 3.918 14 H 0.090 0.910 15 O -0.355 6.355 16 C 0.101 3.899 17 C -0.096 4.096 18 C -0.099 4.099 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.144 4.144 24 C -0.145 4.145 25 C 0.132 3.868 26 F -0.109 7.109 27 C -0.052 4.052 28 Cl -0.021 7.021 29 C -0.070 4.070 30 H 0.370 0.630 31 H 0.093 0.907 32 H -0.245 1.245 33 H -0.237 1.237 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.170 0.830 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -0.832 0.703 3.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.211 4.211 3 Si 0.652 3.348 4 C -0.078 4.078 5 C 0.070 3.930 6 O -0.616 6.616 7 S 2.683 3.317 8 O -0.939 6.939 9 O -0.911 6.911 10 C -0.742 4.742 11 H 0.182 0.818 12 C -0.145 4.145 13 C 0.022 3.978 14 H 0.108 0.892 15 O -0.274 6.274 16 C 0.025 3.975 17 C -0.096 4.096 18 C -0.117 4.117 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.182 4.182 24 C -0.166 4.166 25 C 0.112 3.888 26 F -0.087 7.087 27 C -0.080 4.080 28 Cl 0.008 6.992 29 C -0.088 4.088 30 H 0.218 0.782 31 H 0.110 0.890 32 H -0.169 1.169 33 H -0.160 1.160 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.187 0.813 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.469 0.741 0.747 3.625 hybrid contribution 0.243 -2.446 1.267 2.766 sum 3.713 -1.705 2.013 4.555 Atomic orbital electron populations 1.86776 1.15904 1.33583 1.96932 1.25697 0.85316 1.15555 0.94526 0.92408 0.79275 0.75453 0.87696 1.20519 0.97939 0.91736 0.97640 1.17364 1.00189 0.88847 0.86627 1.85740 1.58742 1.72776 1.44380 1.05911 0.74361 0.76695 0.74738 1.93653 1.70267 1.45193 1.84796 1.93687 1.67091 1.82110 1.48183 1.32206 1.10611 1.19821 1.11546 0.81778 1.22874 0.91504 1.03997 0.96161 1.22771 0.98446 0.84323 0.92226 0.89176 1.87982 1.40925 1.34603 1.63902 1.21458 0.88774 0.93383 0.93844 1.19528 1.01053 0.93856 0.95190 1.21077 0.97530 0.98084 0.94988 1.21203 1.00199 0.92428 1.00269 1.21279 0.97758 0.98685 0.95204 1.21209 0.99271 0.97740 0.95849 1.21084 0.99149 0.91976 0.99377 1.23624 0.94967 1.00823 0.98812 1.21294 1.00761 1.02671 0.91863 1.16799 0.99158 0.88170 0.84685 1.91637 1.86097 1.81550 1.49423 1.21109 1.02984 0.90836 0.93089 1.98452 1.83521 1.72710 1.44482 1.20801 0.96628 1.01135 0.90268 0.78224 0.88963 1.16942 1.16025 0.87384 0.87752 0.91821 0.91961 0.85950 0.85715 0.85768 0.85682 0.85862 0.88411 0.86962 0.81255 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.79 12.65 -35.23 -0.45 -1.23 16 2 C -0.10 -0.13 2.19 36.01 0.08 -0.05 16 3 Si 0.76 -0.20 30.40 -169.99 -5.17 -5.37 16 4 C -0.08 -0.08 4.68 -104.47 -0.49 -0.57 16 5 C 0.11 0.03 4.56 -39.23 -0.18 -0.15 16 6 O -0.66 -0.23 9.04 -51.82 -0.47 -0.70 16 7 S 2.59 1.71 4.91 -107.50 -0.53 1.18 16 8 O -0.94 -1.49 13.56 -67.04 -0.91 -2.40 16 9 O -0.91 -3.83 18.09 -67.04 -1.21 -5.04 16 10 C -0.63 1.17 3.92 -25.78 -0.10 1.07 16 11 H 0.16 -0.46 8.14 -51.93 -0.42 -0.89 16 12 C -0.11 0.24 7.50 -25.92 -0.19 0.04 16 13 C 0.08 -0.18 4.36 -25.92 -0.11 -0.29 16 14 H 0.09 -0.34 7.88 -51.93 -0.41 -0.75 16 15 O -0.36 0.08 10.25 -35.23 -0.36 -0.28 16 16 C 0.10 -0.12 5.91 36.01 0.21 0.10 16 17 C -0.10 -0.04 5.51 -104.62 -0.58 -0.62 16 18 C -0.10 -0.03 9.70 -39.58 -0.38 -0.42 16 19 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 20 C -0.11 -0.02 10.05 -39.58 -0.40 -0.42 16 21 C -0.12 -0.03 10.05 -39.58 -0.40 -0.42 16 22 C -0.10 -0.04 9.70 -39.59 -0.38 -0.42 16 23 C -0.14 0.37 5.17 -25.78 -0.13 0.24 16 24 C -0.15 0.18 6.68 -39.37 -0.26 -0.09 16 25 C 0.13 -0.04 7.27 -39.41 -0.29 -0.32 16 26 F -0.11 -0.02 16.83 2.25 0.04 0.02 16 27 C -0.05 -0.02 6.33 -39.42 -0.25 -0.27 16 28 Cl -0.02 -0.01 28.61 -51.86 -1.48 -1.50 16 29 C -0.07 -0.04 8.44 -39.58 -0.33 -0.38 16 30 H 0.37 -0.16 8.60 45.56 0.39 0.23 16 31 H 0.09 0.12 5.42 -51.93 -0.28 -0.16 16 32 H -0.24 -0.21 6.81 56.52 0.38 0.18 16 33 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 34 H 0.11 -0.40 8.10 -51.93 -0.42 -0.83 16 35 H 0.10 -0.24 8.14 -51.92 -0.42 -0.66 16 36 H 0.06 -0.15 8.09 -51.93 -0.42 -0.57 16 37 H 0.06 -0.14 8.08 -51.93 -0.42 -0.56 16 38 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 39 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 40 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 41 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 42 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 43 H 0.10 -0.32 5.98 -51.93 -0.31 -0.63 16 44 H 0.11 -0.35 7.54 -51.93 -0.39 -0.75 16 45 H 0.17 -0.61 6.61 -52.49 -0.35 -0.96 16 46 H 0.16 -0.02 4.93 -52.49 -0.26 -0.28 16 LS Contribution 408.12 15.07 6.15 6.15 Total: 0.00 -7.87 408.12 -14.02 -21.88 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: -5.04 Total: -9.32 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.59 Total: -3.41 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -3.40 Total: -9.65 kcal Atomic # 9 Polarization: -0.02 SS G_CDS: 0.04 Total: 0.02 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.17 Total: -5.37 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -0.53 Total: 1.18 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.48 Total: -1.50 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -7.87 -14.02 -21.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.739 kcal (2) G-P(sol) polarization free energy of solvation -7.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds