Wall clock time and date at job start Mon Mar 8 2021 08:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47188 * 2 1 4 4 C 1.34225 * 117.00350 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99826 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00285 * 179.97438 * 4 3 2 7 7 H 1.09001 * 112.84522 * 48.80597 * 6 4 3 8 8 C 1.53783 * 113.61355 * 180.02562 * 6 4 3 9 9 C 1.53781 * 87.07933 * 140.06859 * 8 6 4 10 10 F 1.39892 * 113.61604 * 89.19889 * 9 8 6 11 11 C 1.53004 * 113.61193 * 220.01965 * 9 8 6 12 12 S 1.81396 * 109.46947 * 178.46687 * 11 9 8 13 13 O 1.42105 * 110.54146 * 68.37373 * 12 11 9 14 14 O 1.42099 * 110.54873 * 291.62428 * 12 11 9 15 15 O 1.52207 * 104.45058 * 179.97438 * 12 11 9 16 16 C 1.35920 * 113.99488 * 74.15133 * 15 12 11 17 17 C 1.38706 * 120.03321 * 262.71745 * 16 15 12 18 18 C 1.50708 * 119.99588 * 359.97438 * 17 16 15 19 19 O 1.42901 * 109.46602 * 253.58430 * 18 17 16 20 20 Si 1.86297 * 109.47067 * 133.58487 * 18 17 16 21 21 C 1.38186 * 120.00492 * 179.97438 * 17 16 15 22 22 C 1.38290 * 120.06914 * 359.97438 * 21 17 16 23 23 Cl 1.73599 * 119.97257 * 179.97438 * 22 21 17 24 24 C 1.38617 * 120.05888 * 359.97093 * 22 21 17 25 25 F 1.35098 * 119.99834 * 180.02562 * 24 22 21 26 26 C 1.38324 * 119.99654 * 359.81222 * 24 22 21 27 27 C 1.53784 * 87.17274 * 334.60865 * 9 8 6 28 28 H 1.09008 * 109.46954 * 60.00382 * 1 2 3 29 29 H 1.08998 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47163 * 300.00420 * 1 2 3 31 31 H 1.08997 * 109.47567 * 240.00207 * 2 1 3 32 32 H 1.08999 * 109.47104 * 119.99592 * 2 1 3 33 33 H 1.09004 * 113.61449 * 25.51947 * 8 6 4 34 34 H 1.08996 * 113.69128 * 254.62531 * 8 6 4 35 35 H 1.09002 * 109.47019 * 58.47106 * 11 9 8 36 36 H 1.08991 * 109.46995 * 298.46551 * 11 9 8 37 37 H 1.09004 * 109.46794 * 13.58166 * 18 17 16 38 38 H 0.96695 * 113.99996 * 66.42687 * 19 18 17 39 39 H 1.48499 * 110.00082 * 178.68049 * 20 18 17 40 40 H 1.48499 * 109.99906 * 299.99680 * 20 18 17 41 41 H 1.08002 * 119.96641 * 180.02562 * 21 17 16 42 42 H 1.08002 * 120.03647 * 180.20919 * 26 24 22 43 43 H 1.09000 * 113.61622 * 139.94206 * 27 9 8 44 44 H 1.09005 * 113.61296 * 270.84250 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4707 3.5819 0.7553 8 6 5.4582 2.9682 0.0001 9 6 5.3564 4.1437 -0.9862 10 9 5.2850 5.3939 -0.3626 11 6 6.3987 4.0966 -2.1054 12 16 6.1491 5.5029 -3.2236 13 8 6.4713 6.7229 -2.5699 14 8 4.9334 5.3571 -3.9448 15 8 7.2338 5.3457 -4.2797 16 6 6.9961 4.3484 -5.1720 17 6 7.5806 3.1032 -4.9935 18 6 8.4803 2.8559 -3.8100 19 8 9.8391 2.7983 -4.2486 20 14 8.0183 1.2402 -3.0057 21 6 7.3380 2.0895 -5.9008 22 6 6.5123 2.3147 -6.9870 23 17 6.2098 1.0397 -8.1256 24 6 5.9258 3.5577 -7.1674 25 9 5.1189 3.7762 -8.2287 26 6 6.1633 4.5729 -6.2584 27 6 3.9855 3.5810 -1.3971 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9128 2.0756 -0.4298 34 1 5.8907 3.2419 0.9624 35 1 6.2916 3.1659 -2.6627 36 1 7.3980 4.1487 -1.6736 37 1 8.3647 3.6663 -3.0902 38 1 10.1785 3.6375 -4.5885 39 1 8.9188 0.9692 -1.8564 40 1 6.6073 1.2873 -2.5453 41 1 7.7932 1.1201 -5.7610 42 1 5.7039 5.5406 -6.3965 43 1 3.2295 4.3490 -1.5606 44 1 4.0367 2.8562 -2.2097 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10548610_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:22:29 Heat of formation + Delta-G solvation = -240.605133 kcal Electronic energy + Delta-G solvation = -39485.218514 eV Core-core repulsion = 33775.508167 eV Total energy + Delta-G solvation = -5709.710347 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.053 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.34258 -49.35476 -42.88188 -41.92398 -39.83699 -39.46014 -38.77378 -38.11145 -37.64590 -37.60482 -37.41734 -33.28365 -32.77927 -32.20390 -31.69337 -27.55854 -27.43617 -26.72888 -25.42083 -24.03111 -23.56029 -22.62649 -21.91329 -21.03708 -20.19653 -19.61030 -19.42319 -18.97354 -18.76822 -18.12695 -18.04940 -17.81575 -17.74883 -17.51146 -17.12034 -16.98721 -16.72187 -16.37605 -16.24745 -16.05461 -15.68147 -15.55695 -15.42054 -14.99674 -14.78538 -14.70181 -14.57219 -14.46388 -14.26213 -14.03807 -13.96273 -13.78145 -13.73931 -13.70375 -13.62893 -13.28465 -13.22468 -13.11219 -13.01121 -12.69105 -12.64821 -12.53841 -12.31837 -12.12774 -12.05298 -11.70644 -11.61972 -11.60108 -11.53590 -11.44212 -10.47925 -10.12714 -5.06154 -1.66198 -0.74090 -0.51392 0.46821 0.65932 0.91941 1.04730 1.44290 1.48945 1.65856 1.83244 2.03995 2.31426 2.49484 2.50443 2.57334 2.69468 2.93805 3.03264 3.05134 3.14524 3.17307 3.44238 3.47414 3.62465 3.66290 3.80567 3.91861 3.95839 4.00942 4.01233 4.13475 4.21320 4.27197 4.28771 4.30341 4.32309 4.47526 4.52331 4.55640 4.60857 4.78769 4.87507 4.89071 5.03952 5.09989 5.36272 6.46650 6.53709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.476 3.524 5 O -0.528 6.528 6 C -0.107 4.107 7 H 0.156 0.844 8 C -0.122 4.122 9 C 0.098 3.902 10 F -0.180 7.180 11 C -0.686 4.686 12 S 2.592 3.408 13 O -0.937 6.937 14 O -0.946 6.946 15 O -0.653 6.653 16 C 0.089 3.911 17 C -0.116 4.116 18 C -0.097 4.097 19 O -0.528 6.528 20 Si 0.768 3.232 21 C -0.041 4.041 22 C -0.054 4.054 23 Cl -0.019 7.019 24 C 0.128 3.872 25 F -0.118 7.118 26 C -0.123 4.123 27 C -0.150 4.150 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.170 0.830 36 H 0.188 0.812 37 H 0.081 0.919 38 H 0.386 0.614 39 H -0.268 1.268 40 H -0.228 1.228 41 H 0.201 0.799 42 H 0.169 0.831 43 H 0.118 0.882 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -5.906 -0.053 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.320 3.680 5 O -0.417 6.417 6 C -0.126 4.126 7 H 0.173 0.827 8 C -0.160 4.160 9 C 0.078 3.922 10 F -0.160 7.160 11 C -0.813 4.813 12 S 2.688 3.312 13 O -0.935 6.935 14 O -0.944 6.944 15 O -0.611 6.611 16 C 0.046 3.954 17 C -0.119 4.119 18 C -0.205 4.205 19 O -0.335 6.335 20 Si 0.665 3.335 21 C -0.059 4.059 22 C -0.083 4.083 23 Cl 0.010 6.990 24 C 0.107 3.893 25 F -0.096 7.096 26 C -0.144 4.144 27 C -0.188 4.188 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.188 0.812 36 H 0.206 0.794 37 H 0.098 0.902 38 H 0.236 0.764 39 H -0.193 1.193 40 H -0.153 1.153 41 H 0.218 0.782 42 H 0.186 0.814 43 H 0.137 0.863 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.282 -6.518 0.455 6.540 hybrid contribution 0.220 1.681 0.102 1.698 sum -0.062 -4.837 0.558 4.870 Atomic orbital electron populations 1.21839 0.90877 1.04313 1.03698 1.23310 0.96825 0.79007 1.02854 1.86528 1.23920 1.33871 1.83211 1.23551 0.80810 0.92214 0.71430 1.90674 1.61019 1.43678 1.46371 1.22596 0.97136 0.91259 1.01599 0.82689 1.23666 0.94038 0.97015 1.01328 1.21276 0.95800 0.82084 0.92999 1.93003 1.97065 1.42272 1.83663 1.31775 1.11723 1.23487 1.14268 1.05584 0.73662 0.76612 0.75321 1.93670 1.82977 1.41289 1.75613 1.93667 1.46030 1.86964 1.67786 1.85785 1.68095 1.57122 1.50132 1.17671 1.01461 0.85031 0.91195 1.20635 0.99744 0.91024 1.00517 1.26070 0.84546 1.14389 0.95477 1.86749 1.22584 1.39640 1.84519 0.92264 0.79193 0.80293 0.81706 1.21087 0.94217 1.01031 0.89549 1.21281 1.01249 0.89824 0.95905 1.98461 1.94539 1.47790 1.58220 1.17085 0.93221 0.92643 0.86339 1.91615 1.70007 1.95027 1.52940 1.21387 0.98697 1.01554 0.92772 1.23962 0.95660 1.02232 0.96918 0.91284 0.88444 0.91392 0.90853 0.91119 0.86187 0.86422 0.81221 0.79443 0.90191 0.76371 1.19288 1.15293 0.78175 0.81383 0.86338 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.71 10.29 71.98 0.74 1.45 16 2 C 0.05 -0.05 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.64 10.22 -51.37 -0.53 -1.16 16 4 C 0.48 0.92 7.49 71.24 0.53 1.46 16 5 O -0.53 -3.52 15.65 21.95 0.34 -3.18 16 6 C -0.11 0.30 4.23 -10.95 -0.05 0.26 16 7 H 0.16 -0.95 8.14 -2.39 -0.02 -0.97 16 8 C -0.12 0.46 6.86 31.12 0.21 0.67 16 9 C 0.10 -0.19 1.60 -10.26 -0.02 -0.20 16 10 F -0.18 -0.49 16.35 44.97 0.74 0.25 16 11 C -0.69 2.54 3.26 71.98 0.23 2.77 16 12 S 2.59 8.01 4.90 -56.49 -0.28 7.73 16 13 O -0.94 -10.16 17.57 -118.57 -2.08 -12.24 16 14 O -0.95 -5.04 15.83 -118.57 -1.88 -6.91 16 15 O -0.65 -0.57 9.06 -61.74 -0.56 -1.13 16 16 C 0.09 -0.08 4.90 22.50 0.11 0.03 16 17 C -0.12 0.58 4.19 -19.76 -0.08 0.50 16 18 C -0.10 0.62 2.10 71.24 0.15 0.77 16 19 O -0.53 3.13 12.63 -148.98 -1.88 1.24 16 20 Si 0.77 -5.38 28.99 68.60 1.99 -3.39 16 21 C -0.04 0.28 8.46 22.27 0.19 0.47 16 22 C -0.05 0.17 6.33 22.37 0.14 0.31 16 23 Cl -0.02 0.05 28.61 -2.72 -0.08 -0.03 16 24 C 0.13 0.00 7.27 22.38 0.16 0.17 16 25 F -0.12 -0.32 16.83 44.97 0.76 0.44 16 26 C -0.12 -0.05 8.57 22.40 0.19 0.15 16 27 C -0.15 0.47 7.09 31.18 0.22 0.70 16 28 H 0.07 -0.31 8.14 -2.38 -0.02 -0.32 16 29 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.07 -0.10 8.13 -2.39 -0.02 -0.12 16 32 H 0.07 -0.06 8.13 -2.39 -0.02 -0.08 16 33 H 0.12 -0.45 7.25 -2.39 -0.02 -0.47 16 34 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.17 -1.28 3.77 -2.39 -0.01 -1.29 16 36 H 0.19 -1.78 6.84 -2.39 -0.02 -1.79 16 37 H 0.08 -0.66 4.02 -2.38 -0.01 -0.67 16 38 H 0.39 -4.05 9.12 -74.06 -0.68 -4.72 16 39 H -0.27 0.26 7.11 99.48 0.71 0.96 16 40 H -0.23 1.62 6.15 99.48 0.61 2.23 16 41 H 0.20 -2.66 6.72 -2.91 -0.02 -2.68 16 42 H 0.17 -0.03 7.92 -2.91 -0.02 -0.06 16 43 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.13 -0.69 7.94 -2.38 -0.02 -0.71 16 Total: 0.00 -21.62 397.42 0.11 -21.52 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: 0.37 Total: -13.02 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 3.19 Total: 9.88 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -6.58 Total: -23.37 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 1.49 Total: 0.69 kcal Atomic # 14 Polarization: -5.38 SS G_CDS: 1.99 Total: -3.39 kcal Atomic # 16 Polarization: 8.01 SS G_CDS: -0.28 Total: 7.73 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -21.62 0.11 -21.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.088 kcal (2) G-P(sol) polarization free energy of solvation -21.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds