Wall clock time and date at job start Mon Mar 8 2021 08:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99708 * 2 1 4 4 C 1.52992 * 112.84841 * 68.71699 * 3 2 1 5 5 F 1.39898 * 109.47452 * 54.79951 * 4 3 2 6 6 F 1.39901 * 109.46957 * 174.79483 * 4 3 2 7 7 F 1.39901 * 109.47585 * 294.79441 * 4 3 2 8 8 C 1.53781 * 113.61048 * 297.52334 * 3 2 1 9 9 C 1.53785 * 87.07968 * 270.88505 * 8 3 2 10 10 H 1.09007 * 113.61377 * 220.02529 * 9 8 3 11 11 C 1.53001 * 113.61540 * 89.11862 * 9 8 3 12 12 S 1.81401 * 109.47038 * 174.99807 * 11 9 8 13 13 O 1.42100 * 110.54321 * 286.13705 * 12 11 9 14 14 O 1.42095 * 110.54135 * 62.89248 * 12 11 9 15 15 O 1.52199 * 104.44386 * 174.51362 * 12 11 9 16 16 C 1.35918 * 114.00168 * 74.66497 * 15 12 11 17 17 C 1.38705 * 120.03129 * 95.79858 * 16 15 12 18 18 C 1.50701 * 120.00069 * 359.96984 * 17 16 15 19 19 O 1.42902 * 109.46708 * 75.06284 * 18 17 16 20 20 Si 1.86300 * 109.47430 * 195.06093 * 18 17 16 21 21 C 1.38193 * 120.00305 * 179.72210 * 17 16 15 22 22 C 1.38292 * 120.06406 * 0.55215 * 21 17 16 23 23 Cl 1.73603 * 119.96745 * 179.70267 * 22 21 17 24 24 C 1.38612 * 120.06455 * 359.71774 * 22 21 17 25 25 F 1.35098 * 120.00571 * 179.97438 * 24 22 21 26 26 C 1.38325 * 119.99097 * 0.02562 * 24 22 21 27 27 C 1.53778 * 113.61102 * 200.02468 * 3 2 1 28 28 H 1.09000 * 109.47031 * 62.67214 * 1 2 3 29 29 H 1.08998 * 109.46750 * 182.66850 * 1 2 3 30 30 H 1.08997 * 109.47283 * 302.67177 * 1 2 3 31 31 H 1.08998 * 113.61977 * 25.43021 * 8 3 2 32 32 H 1.09003 * 113.61176 * 156.25688 * 8 3 2 33 33 H 1.08995 * 109.47245 * 295.00328 * 11 9 8 34 34 H 1.09007 * 109.46758 * 55.00004 * 11 9 8 35 35 H 1.09001 * 109.46928 * 315.06735 * 18 17 16 36 36 H 0.96695 * 114.00135 * 65.12787 * 19 18 17 37 37 H 1.48499 * 109.99988 * 58.68006 * 20 18 17 38 38 H 1.48495 * 110.00071 * 180.02562 * 20 18 17 39 39 H 1.07996 * 119.97036 * 180.24483 * 21 17 16 40 40 H 1.08005 * 120.03066 * 180.02562 * 26 24 22 41 41 H 1.09001 * 113.61433 * 203.66345 * 27 3 2 42 42 H 1.08995 * 113.61648 * 334.56905 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7843 2.0564 1.3137 5 9 2.2501 1.2803 2.3805 6 9 2.4788 3.2705 1.2823 7 9 0.4177 2.3051 1.4798 8 6 1.6659 2.1330 -1.2496 9 6 2.9147 1.5189 -1.9040 10 1 3.4855 2.2268 -2.5052 11 6 2.6396 0.2031 -2.6346 12 16 4.1463 -0.3432 -3.4843 13 8 4.3885 0.4565 -4.6336 14 8 5.1795 -0.6090 -2.5457 15 8 3.7897 -1.7115 -4.0474 16 6 2.9758 -1.6668 -5.1350 17 6 3.5181 -1.7206 -6.4105 18 6 5.0104 -1.8280 -6.5909 19 8 5.4322 -3.1592 -6.2874 20 14 5.4535 -1.4232 -8.3546 21 6 2.6896 -1.6808 -7.5158 22 6 1.3204 -1.5759 -7.3520 23 17 0.2826 -1.5184 -8.7425 24 6 0.7760 -1.5163 -6.0787 25 9 -0.5617 -1.4134 -5.9200 26 6 1.6025 -1.5613 -4.9705 27 6 3.4702 1.3298 -0.4825 28 1 -0.3633 0.4718 -0.9130 29 1 -0.3633 -1.0266 0.0478 30 1 -0.3634 0.5547 0.8650 31 1 0.7320 1.8356 -1.7266 32 1 1.7376 3.2095 -1.0938 33 1 2.3333 -0.5553 -1.9142 34 1 1.8444 0.3525 -3.3651 35 1 5.5087 -1.1273 -5.9210 36 1 5.0892 -3.8286 -6.8949 37 1 4.9916 -0.0529 -8.6926 38 1 6.9225 -1.5261 -8.5457 39 1 3.1121 -1.7267 -8.5087 40 1 1.1790 -1.5153 -3.9780 41 1 4.0365 2.1866 -0.1174 42 1 3.9928 0.3840 -0.3403 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10548610_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:42 Heat of formation + Delta-G solvation = -299.585619 kcal Electronic energy + Delta-G solvation = -40961.995653 eV Core-core repulsion = 34757.728101 eV Total energy + Delta-G solvation = -6204.267552 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.034 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -51.25524 -50.44743 -48.81579 -48.67263 -42.77232 -41.70447 -39.84048 -38.49264 -38.17391 -37.59595 -37.55399 -37.31047 -33.21608 -32.05700 -31.74520 -28.68955 -27.97264 -27.20593 -27.03338 -25.48082 -23.83910 -23.59723 -22.18399 -20.98170 -20.24471 -19.79142 -19.57494 -19.48720 -19.18985 -19.14568 -18.54908 -18.08563 -17.78542 -17.49396 -17.23983 -17.13384 -16.69262 -16.39773 -16.18273 -16.02031 -15.86468 -15.76909 -15.60754 -15.51537 -15.43134 -15.34726 -15.16518 -14.97193 -14.88119 -14.79069 -14.53979 -14.47862 -14.17029 -14.01587 -13.93218 -13.55517 -13.48629 -13.40629 -13.36886 -13.33210 -13.16267 -12.77431 -12.62390 -12.59152 -12.46562 -12.28210 -12.21704 -12.11822 -11.67607 -10.98282 -10.75831 -10.68705 -10.15636 -5.23913 -1.46097 -0.71419 -0.67553 0.48763 0.68807 1.00773 1.44894 1.50040 1.55493 1.85880 1.86633 2.19303 2.39614 2.43388 2.49738 2.59754 2.67125 2.81245 2.87666 3.00126 3.04931 3.15041 3.22406 3.29417 3.38293 3.45701 3.61636 3.80299 3.87363 3.95003 4.00992 4.08048 4.12287 4.13755 4.16422 4.26702 4.27190 4.30836 4.35043 4.50483 4.52015 4.56471 4.60382 4.94528 5.48071 6.37832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.334 6.334 3 C 0.041 3.959 4 C 0.439 3.561 5 F -0.172 7.172 6 F -0.174 7.174 7 F -0.180 7.180 8 C -0.138 4.138 9 C -0.091 4.091 10 H 0.110 0.890 11 C -0.647 4.647 12 S 2.586 3.414 13 O -0.945 6.945 14 O -0.906 6.906 15 O -0.647 6.647 16 C 0.130 3.870 17 C -0.087 4.087 18 C -0.083 4.083 19 O -0.525 6.525 20 Si 0.689 3.311 21 C -0.059 4.059 22 C -0.057 4.057 23 Cl -0.019 7.019 24 C 0.142 3.858 25 F -0.109 7.109 26 C -0.167 4.167 27 C -0.124 4.124 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.380 0.620 37 H -0.242 1.242 38 H -0.241 1.241 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -0.853 -4.581 6.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.251 6.251 3 C -0.001 4.001 4 C 0.385 3.615 5 F -0.153 7.153 6 F -0.156 7.156 7 F -0.162 7.162 8 C -0.177 4.177 9 C -0.110 4.110 10 H 0.128 0.872 11 C -0.773 4.773 12 S 2.681 3.319 13 O -0.944 6.944 14 O -0.904 6.904 15 O -0.606 6.606 16 C 0.088 3.912 17 C -0.090 4.090 18 C -0.193 4.193 19 O -0.330 6.330 20 Si 0.587 3.413 21 C -0.077 4.077 22 C -0.085 4.085 23 Cl 0.010 6.990 24 C 0.121 3.879 25 F -0.087 7.087 26 C -0.188 4.188 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.140 0.860 36 H 0.228 0.772 37 H -0.166 1.166 38 H -0.165 1.165 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.143 0.857 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.693 -0.358 -4.845 5.555 hybrid contribution -1.442 0.600 1.508 2.171 sum -4.135 0.243 -3.337 5.319 Atomic orbital electron populations 1.23305 0.79316 1.04658 1.02149 1.88050 1.21364 1.21877 1.93854 1.23898 0.99881 0.86637 0.89702 1.21139 0.74078 0.78364 0.87948 1.93232 1.88345 1.74535 1.59200 1.93192 1.79243 1.46461 1.96663 1.93155 1.32258 1.94426 1.96329 1.23621 0.99415 1.01127 0.93513 1.21686 0.99270 0.94074 0.96010 0.87154 1.30941 1.23376 1.08442 1.14522 1.05868 0.77088 0.73233 0.75684 1.93668 1.84131 1.69671 1.46919 1.93691 1.51228 1.81513 1.63955 1.85808 1.68511 1.58063 1.48170 1.17372 0.86831 1.03524 0.83464 1.20540 0.98454 0.99129 0.90915 1.25285 0.89837 0.89172 1.14962 1.86634 1.73760 1.14702 1.57862 0.95454 0.83802 0.85628 0.76415 1.20774 0.90129 0.97513 0.99299 1.21090 0.92722 1.06106 0.88628 1.98457 1.65593 1.96331 1.38630 1.16820 0.78386 1.01336 0.91363 1.91639 1.28135 1.92826 1.96108 1.21307 0.91520 1.05334 1.00621 1.23455 0.91985 1.06970 0.93714 0.92641 0.87928 0.91792 0.88307 0.86564 0.82325 0.83898 0.85998 0.77231 1.16571 1.16497 0.81729 0.81568 0.85690 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.44 101.05 1.06 1.05 16 2 O -0.33 0.22 8.52 -35.23 -0.30 -0.08 16 3 C 0.04 -0.04 0.79 -89.81 -0.07 -0.11 16 4 C 0.44 0.30 2.67 37.15 0.10 0.40 16 5 F -0.17 -0.43 17.26 2.25 0.04 -0.39 16 6 F -0.17 -0.11 15.72 2.25 0.04 -0.08 16 7 F -0.18 -0.16 14.75 2.25 0.03 -0.13 16 8 C -0.14 0.43 6.65 -25.92 -0.17 0.26 16 9 C -0.09 0.23 3.84 -89.80 -0.35 -0.12 16 10 H 0.11 -0.43 8.13 -51.92 -0.42 -0.85 16 11 C -0.65 1.74 4.62 37.16 0.17 1.92 16 12 S 2.59 2.60 4.99 -107.50 -0.54 2.07 16 13 O -0.95 -2.32 15.05 -67.04 -1.01 -3.33 16 14 O -0.91 -3.86 17.98 -67.04 -1.21 -5.07 16 15 O -0.65 -0.71 9.40 -51.81 -0.49 -1.20 16 16 C 0.13 -0.01 4.70 -39.23 -0.18 -0.19 16 17 C -0.09 0.04 4.83 -104.47 -0.50 -0.47 16 18 C -0.08 -0.03 2.32 36.01 0.08 0.05 16 19 O -0.52 -0.09 12.93 -35.23 -0.46 -0.54 16 20 Si 0.69 -1.19 29.84 -169.99 -5.07 -6.26 16 21 C -0.06 0.14 8.43 -39.58 -0.33 -0.19 16 22 C -0.06 0.09 6.33 -39.42 -0.25 -0.16 16 23 Cl -0.02 0.03 28.61 -51.86 -1.48 -1.46 16 24 C 0.14 -0.22 7.27 -39.41 -0.29 -0.51 16 25 F -0.11 0.10 16.83 2.25 0.04 0.14 16 26 C -0.17 0.36 8.39 -39.38 -0.33 0.03 16 27 C -0.12 0.17 6.92 -25.92 -0.18 -0.01 16 28 H 0.06 -0.23 6.63 -51.93 -0.34 -0.57 16 29 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 30 H 0.06 -0.11 5.75 -51.93 -0.30 -0.41 16 31 H 0.10 -0.43 6.55 -51.93 -0.34 -0.77 16 32 H 0.12 -0.46 7.67 -51.93 -0.40 -0.86 16 33 H 0.16 -0.54 6.12 -51.93 -0.32 -0.86 16 34 H 0.14 -0.76 6.50 -51.92 -0.34 -1.09 16 35 H 0.12 0.28 6.13 -51.93 -0.32 -0.04 16 36 H 0.38 -1.85 8.61 45.56 0.39 -1.46 16 37 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 38 H -0.24 -0.29 7.11 56.52 0.40 0.11 16 39 H 0.17 -0.85 5.14 -52.49 -0.27 -1.12 16 40 H 0.17 -0.85 6.93 -52.48 -0.36 -1.21 16 41 H 0.12 -0.33 7.32 -51.93 -0.38 -0.71 16 42 H 0.11 -0.08 7.99 -51.93 -0.41 -0.49 16 LS Contribution 381.92 15.07 5.76 5.76 Total: 0.00 -10.12 381.92 -9.33 -19.45 By element: Atomic # 1 Polarization: -7.39 SS G_CDS: -3.43 Total: -10.83 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.25 Total: 1.95 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -3.46 Total: -10.22 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.15 Total: -0.46 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.07 Total: -6.26 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -0.54 Total: 2.07 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.48 Total: -1.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -10.12 -9.33 -19.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -280.133 kcal (2) G-P(sol) polarization free energy of solvation -10.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -290.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds