Wall clock time and date at job start Mon Mar 8 2021 08:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99708 * 2 1 4 4 C 1.52992 * 112.84841 * 68.71699 * 3 2 1 5 5 F 1.39898 * 109.47452 * 54.79951 * 4 3 2 6 6 F 1.39901 * 109.46957 * 174.79483 * 4 3 2 7 7 F 1.39901 * 109.47585 * 294.79441 * 4 3 2 8 8 C 1.53781 * 113.61048 * 297.52334 * 3 2 1 9 9 C 1.53785 * 87.07968 * 270.88505 * 8 3 2 10 10 H 1.09007 * 113.61377 * 220.02529 * 9 8 3 11 11 C 1.53001 * 113.61540 * 89.11862 * 9 8 3 12 12 S 1.81401 * 109.47038 * 174.99807 * 11 9 8 13 13 O 1.42100 * 110.54321 * 286.13705 * 12 11 9 14 14 O 1.42095 * 110.54135 * 62.89248 * 12 11 9 15 15 O 1.52199 * 104.44386 * 174.51362 * 12 11 9 16 16 C 1.35918 * 114.00168 * 74.66497 * 15 12 11 17 17 C 1.38705 * 120.03129 * 95.79858 * 16 15 12 18 18 C 1.50701 * 120.00069 * 359.96984 * 17 16 15 19 19 O 1.42902 * 109.46708 * 75.06284 * 18 17 16 20 20 Si 1.86300 * 109.47430 * 195.06093 * 18 17 16 21 21 C 1.38193 * 120.00305 * 179.72210 * 17 16 15 22 22 C 1.38292 * 120.06406 * 0.55215 * 21 17 16 23 23 Cl 1.73603 * 119.96745 * 179.70267 * 22 21 17 24 24 C 1.38612 * 120.06455 * 359.71774 * 22 21 17 25 25 F 1.35098 * 120.00571 * 179.97438 * 24 22 21 26 26 C 1.38325 * 119.99097 * 0.02562 * 24 22 21 27 27 C 1.53778 * 113.61102 * 200.02468 * 3 2 1 28 28 H 1.09000 * 109.47031 * 62.67214 * 1 2 3 29 29 H 1.08998 * 109.46750 * 182.66850 * 1 2 3 30 30 H 1.08997 * 109.47283 * 302.67177 * 1 2 3 31 31 H 1.08998 * 113.61977 * 25.43021 * 8 3 2 32 32 H 1.09003 * 113.61176 * 156.25688 * 8 3 2 33 33 H 1.08995 * 109.47245 * 295.00328 * 11 9 8 34 34 H 1.09007 * 109.46758 * 55.00004 * 11 9 8 35 35 H 1.09001 * 109.46928 * 315.06735 * 18 17 16 36 36 H 0.96695 * 114.00135 * 65.12787 * 19 18 17 37 37 H 1.48499 * 109.99988 * 58.68006 * 20 18 17 38 38 H 1.48495 * 110.00071 * 180.02562 * 20 18 17 39 39 H 1.07996 * 119.97036 * 180.24483 * 21 17 16 40 40 H 1.08005 * 120.03066 * 180.02562 * 26 24 22 41 41 H 1.09001 * 113.61433 * 203.66345 * 27 3 2 42 42 H 1.08995 * 113.61648 * 334.56905 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7843 2.0564 1.3137 5 9 2.2501 1.2803 2.3805 6 9 2.4788 3.2705 1.2823 7 9 0.4177 2.3051 1.4798 8 6 1.6659 2.1330 -1.2496 9 6 2.9147 1.5189 -1.9040 10 1 3.4855 2.2268 -2.5052 11 6 2.6396 0.2031 -2.6346 12 16 4.1463 -0.3432 -3.4843 13 8 4.3885 0.4565 -4.6336 14 8 5.1795 -0.6090 -2.5457 15 8 3.7897 -1.7115 -4.0474 16 6 2.9758 -1.6668 -5.1350 17 6 3.5181 -1.7206 -6.4105 18 6 5.0104 -1.8280 -6.5909 19 8 5.4322 -3.1592 -6.2874 20 14 5.4535 -1.4232 -8.3546 21 6 2.6896 -1.6808 -7.5158 22 6 1.3204 -1.5759 -7.3520 23 17 0.2826 -1.5184 -8.7425 24 6 0.7760 -1.5163 -6.0787 25 9 -0.5617 -1.4134 -5.9200 26 6 1.6025 -1.5613 -4.9705 27 6 3.4702 1.3298 -0.4825 28 1 -0.3633 0.4718 -0.9130 29 1 -0.3633 -1.0266 0.0478 30 1 -0.3634 0.5547 0.8650 31 1 0.7320 1.8356 -1.7266 32 1 1.7376 3.2095 -1.0938 33 1 2.3333 -0.5553 -1.9142 34 1 1.8444 0.3525 -3.3651 35 1 5.5087 -1.1273 -5.9210 36 1 5.0892 -3.8286 -6.8949 37 1 4.9916 -0.0529 -8.6926 38 1 6.9225 -1.5261 -8.5457 39 1 3.1121 -1.7267 -8.5087 40 1 1.1790 -1.5153 -3.9780 41 1 4.0365 2.1866 -0.1174 42 1 3.9928 0.3840 -0.3403 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10548610_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:40 Heat of formation + Delta-G solvation = -300.866493 kcal Electronic energy + Delta-G solvation = -40962.051196 eV Core-core repulsion = 34757.728101 eV Total energy + Delta-G solvation = -6204.323095 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.034 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -51.30109 -50.31150 -48.84482 -48.76523 -42.70671 -41.53218 -39.74944 -38.59789 -38.09025 -37.56720 -37.44130 -37.28768 -33.08071 -31.92652 -31.61442 -28.48049 -27.88436 -27.13562 -26.82120 -25.35541 -23.74321 -23.50031 -22.12824 -20.84894 -20.19947 -19.76146 -19.60962 -19.45766 -19.14559 -19.10212 -18.47711 -17.99675 -17.72566 -17.33217 -17.14661 -17.02507 -16.51376 -16.35924 -16.12394 -15.94968 -15.72204 -15.67835 -15.62213 -15.46079 -15.36132 -15.27291 -15.15904 -14.97501 -14.93581 -14.73349 -14.47155 -14.38622 -14.17287 -13.99560 -13.84375 -13.61337 -13.49553 -13.34769 -13.24017 -13.20660 -12.96156 -12.69453 -12.49654 -12.40786 -12.26688 -12.20984 -12.14055 -12.05955 -11.51311 -10.83535 -10.70778 -10.51457 -10.04373 -5.14972 -1.42336 -0.59789 -0.53303 0.60486 0.74850 1.08027 1.48316 1.58809 1.68882 1.92870 2.03122 2.23089 2.49533 2.54206 2.57718 2.65012 2.79164 3.00533 3.03022 3.16687 3.21840 3.25294 3.26827 3.42144 3.45446 3.65916 3.83422 3.95202 4.11001 4.13725 4.24862 4.27796 4.31149 4.32866 4.39202 4.42990 4.43993 4.49722 4.62941 4.64529 4.70779 4.82216 4.83022 5.08545 5.67336 6.67595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.346 6.346 3 C 0.038 3.962 4 C 0.433 3.567 5 F -0.188 7.188 6 F -0.176 7.176 7 F -0.182 7.182 8 C -0.128 4.128 9 C -0.096 4.096 10 H 0.124 0.876 11 C -0.626 4.626 12 S 2.580 3.420 13 O -0.968 6.968 14 O -0.953 6.953 15 O -0.657 6.657 16 C 0.108 3.892 17 C -0.099 4.099 18 C -0.104 4.104 19 O -0.545 6.545 20 Si 0.791 3.209 21 C -0.052 4.052 22 C -0.058 4.058 23 Cl -0.020 7.020 24 C 0.139 3.861 25 F -0.111 7.111 26 C -0.157 4.157 27 C -0.137 4.137 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.095 0.905 36 H 0.400 0.600 37 H -0.266 1.266 38 H -0.285 1.285 39 H 0.190 0.810 40 H 0.196 0.804 41 H 0.133 0.867 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -0.667 -5.677 8.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.264 6.264 3 C -0.005 4.005 4 C 0.379 3.621 5 F -0.169 7.169 6 F -0.157 7.157 7 F -0.164 7.164 8 C -0.166 4.166 9 C -0.116 4.116 10 H 0.142 0.858 11 C -0.755 4.755 12 S 2.680 3.320 13 O -0.966 6.966 14 O -0.951 6.951 15 O -0.615 6.615 16 C 0.066 3.934 17 C -0.102 4.102 18 C -0.211 4.211 19 O -0.353 6.353 20 Si 0.692 3.308 21 C -0.070 4.070 22 C -0.087 4.087 23 Cl 0.009 6.991 24 C 0.118 3.882 25 F -0.089 7.089 26 C -0.177 4.177 27 C -0.174 4.174 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.113 0.887 36 H 0.251 0.749 37 H -0.192 1.192 38 H -0.212 1.212 39 H 0.207 0.793 40 H 0.213 0.787 41 H 0.151 0.849 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.726 -0.209 -5.946 7.598 hybrid contribution -0.834 0.535 1.906 2.149 sum -5.560 0.326 -4.039 6.880 Atomic orbital electron populations 1.23488 0.78397 1.05554 1.02772 1.88040 1.22441 1.22068 1.93846 1.24033 1.00154 0.86903 0.89364 1.21539 0.73868 0.78378 0.88331 1.93194 1.88559 1.74980 1.60212 1.93182 1.79286 1.46605 1.96675 1.93148 1.32370 1.94458 1.96383 1.23683 0.99780 1.01436 0.91678 1.21806 0.99928 0.94348 0.95510 0.85760 1.30784 1.21129 1.08702 1.14925 1.05843 0.78057 0.72920 0.75158 1.93628 1.85172 1.70020 1.47828 1.93629 1.54428 1.82264 1.64792 1.85775 1.69135 1.57882 1.48731 1.17690 0.87615 1.04823 0.83279 1.20600 0.98132 0.99897 0.91616 1.25544 0.90521 0.88889 1.16156 1.86580 1.74267 1.15268 1.59197 0.94414 0.80086 0.82968 0.73296 1.20937 0.89755 0.96519 0.99788 1.21184 0.92893 1.05931 0.88679 1.98461 1.65614 1.96317 1.38697 1.16882 0.78305 1.01449 0.91534 1.91637 1.28299 1.92874 1.96126 1.21495 0.90416 1.03929 1.01880 1.23598 0.92119 1.06764 0.94956 0.90440 0.86821 0.92915 0.86266 0.85449 0.81240 0.80580 0.88716 0.74892 1.19217 1.21232 0.79329 0.78711 0.84942 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 0.05 10.44 113.37 1.18 1.23 16 2 O -0.35 0.71 8.52 -148.98 -1.27 -0.56 16 3 C 0.04 -0.09 0.79 -10.27 -0.01 -0.10 16 4 C 0.43 0.67 2.67 71.98 0.19 0.86 16 5 F -0.19 -1.15 17.26 44.97 0.78 -0.37 16 6 F -0.18 -0.26 15.72 44.97 0.71 0.45 16 7 F -0.18 -0.30 14.75 44.97 0.66 0.37 16 8 C -0.13 1.03 6.65 31.12 0.21 1.24 16 9 C -0.10 0.58 3.84 -10.26 -0.04 0.54 16 10 H 0.12 -1.08 8.13 -2.38 -0.02 -1.10 16 11 C -0.63 4.08 4.62 71.98 0.33 4.41 16 12 S 2.58 7.96 4.99 -56.49 -0.28 7.68 16 13 O -0.97 -6.01 15.05 -118.57 -1.78 -7.80 16 14 O -0.95 -10.51 17.98 -118.57 -2.13 -12.65 16 15 O -0.66 -2.08 9.40 -61.72 -0.58 -2.66 16 16 C 0.11 -0.03 4.70 22.49 0.11 0.08 16 17 C -0.10 0.07 4.83 -19.76 -0.10 -0.02 16 18 C -0.10 -0.19 2.32 71.24 0.17 -0.03 16 19 O -0.54 -0.80 12.93 -148.98 -1.93 -2.72 16 20 Si 0.79 -2.47 29.84 68.60 2.05 -0.42 16 21 C -0.05 0.29 8.43 22.27 0.19 0.48 16 22 C -0.06 0.26 6.33 22.37 0.14 0.40 16 23 Cl -0.02 0.08 28.61 -2.72 -0.08 0.00 16 24 C 0.14 -0.64 7.27 22.38 0.16 -0.48 16 25 F -0.11 0.40 16.83 44.97 0.76 1.16 16 26 C -0.16 0.91 8.39 22.40 0.19 1.10 16 27 C -0.14 0.32 6.92 31.12 0.22 0.54 16 28 H 0.08 -0.85 6.63 -2.39 -0.02 -0.87 16 29 H 0.11 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.05 -0.21 5.75 -2.39 -0.01 -0.22 16 31 H 0.12 -1.44 6.55 -2.39 -0.02 -1.46 16 32 H 0.13 -1.27 7.67 -2.39 -0.02 -1.29 16 33 H 0.17 -1.36 6.12 -2.39 -0.01 -1.38 16 34 H 0.18 -2.36 6.50 -2.39 -0.02 -2.37 16 35 H 0.10 0.68 6.13 -2.39 -0.01 0.66 16 36 H 0.40 -3.76 8.61 -74.06 -0.64 -4.40 16 37 H -0.27 -0.21 7.11 99.48 0.71 0.50 16 38 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 39 H 0.19 -2.19 5.14 -2.91 -0.01 -2.21 16 40 H 0.20 -2.48 6.93 -2.91 -0.02 -2.50 16 41 H 0.13 -0.61 7.32 -2.39 -0.02 -0.63 16 42 H 0.10 0.02 7.99 -2.39 -0.02 0.00 16 Total: 0.00 -26.38 381.92 0.39 -25.99 By element: Atomic # 1 Polarization: -19.27 SS G_CDS: 0.56 Total: -18.71 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 2.94 Total: 10.25 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -7.69 Total: -26.40 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 2.90 Total: 1.60 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.05 Total: -0.42 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -0.28 Total: 7.68 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Total: -26.38 0.39 -25.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10548610_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -274.876 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -300.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds