Wall clock time and date at job start Mon Mar 8 2021 08:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00321 * 2 1 4 4 O 1.20828 * 119.99824 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00351 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.84841 * 48.80837 * 5 3 2 7 7 C 1.53784 * 113.61392 * 179.97438 * 5 3 2 8 8 C 1.53783 * 87.08018 * 139.98261 * 7 5 3 9 9 H 1.08994 * 113.61470 * 89.11542 * 8 7 5 10 10 S 1.81397 * 113.61614 * 219.93846 * 8 7 5 11 11 O 1.42105 * 110.54084 * 286.13422 * 10 8 7 12 12 O 1.42105 * 110.54560 * 62.88646 * 10 8 7 13 13 O 1.52198 * 104.45206 * 174.51224 * 10 8 7 14 14 C 1.35900 * 114.00108 * 75.62921 * 13 10 8 15 15 C 1.38726 * 120.04529 * 95.26032 * 14 13 10 16 16 C 1.50700 * 119.99626 * 0.02870 * 15 14 13 17 17 O 1.42899 * 109.47736 * 75.38988 * 16 15 14 18 18 Si 1.86309 * 109.46788 * 195.38615 * 16 15 14 19 19 C 1.38176 * 119.99869 * 179.76950 * 15 14 13 20 20 C 1.38205 * 120.07773 * 0.48890 * 19 15 14 21 21 C 1.38523 * 120.08558 * 359.78898 * 20 19 15 22 22 F 1.35097 * 119.99839 * 179.97438 * 21 20 19 23 23 C 1.38339 * 120.00307 * 359.95460 * 21 20 19 24 24 C 1.53778 * 113.61433 * 277.49647 * 5 3 2 25 25 H 1.09007 * 109.46899 * 299.99960 * 1 2 3 26 26 H 1.09003 * 109.47401 * 59.99713 * 1 2 3 27 27 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08994 * 113.61748 * 254.53399 * 7 5 3 29 29 H 1.09005 * 113.61198 * 25.43939 * 7 5 3 30 30 H 1.08995 * 109.47643 * 315.38121 * 16 15 14 31 31 H 0.96694 * 114.00056 * 65.06234 * 17 16 15 32 32 H 1.48497 * 109.99698 * 58.68047 * 18 16 15 33 33 H 1.48499 * 110.00066 * 179.97438 * 18 16 15 34 34 H 1.07992 * 119.95980 * 180.25594 * 19 15 14 35 35 H 1.07997 * 119.96014 * 179.76824 * 20 19 15 36 36 H 1.08006 * 120.03793 * 180.02562 * 23 21 20 37 37 H 1.08995 * 113.61674 * 334.56786 * 24 5 3 38 38 H 1.09006 * 113.61117 * 105.47171 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1078 2.7142 -0.0001 8 6 5.1807 2.2274 0.9882 9 1 6.0806 1.8485 0.5040 10 16 5.5398 3.4132 2.3132 11 8 6.2976 4.5061 1.8124 12 8 4.3872 3.6278 3.1163 13 8 6.5049 2.6766 3.2309 14 6 7.7714 2.5896 2.7459 15 6 8.7261 3.5218 3.1255 16 6 8.3591 4.6314 4.0768 17 8 8.2605 4.1089 5.4031 18 14 9.6719 5.9524 4.0259 19 6 10.0148 3.4296 2.6355 20 6 10.3518 2.4153 1.7593 21 6 9.3997 1.4861 1.3735 22 9 9.7308 0.4956 0.5165 23 6 8.1098 1.5719 1.8661 24 6 4.1906 1.1238 1.3978 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.5112 3.0285 -0.9626 29 1 3.4171 3.4407 0.4281 30 1 7.4010 5.0600 3.7830 31 1 9.0973 3.7810 5.7599 32 1 9.8064 6.4818 2.6450 33 1 9.3216 7.0530 4.9593 34 1 10.7585 4.1532 2.9346 35 1 11.3586 2.3473 1.3746 36 1 7.3671 0.8475 1.5660 37 1 3.5226 1.4153 2.2083 38 1 4.6609 0.1545 1.5634 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10564896_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:49:20 Heat of formation + Delta-G solvation = -190.673231 kcal Electronic energy + Delta-G solvation = -29532.182033 eV Core-core repulsion = 24964.965901 eV Total energy + Delta-G solvation = -4567.216131 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.25849 -42.58190 -41.95586 -39.73057 -39.52431 -38.39094 -37.73508 -37.38013 -37.30039 -32.87482 -31.92031 -29.98501 -27.89032 -27.37531 -26.95959 -25.24111 -23.57307 -23.28486 -21.92447 -20.97791 -19.99295 -19.50523 -19.09995 -18.68113 -18.33004 -17.99578 -17.71229 -17.56389 -17.20215 -16.98795 -16.88759 -16.60750 -16.02513 -15.93532 -15.59694 -15.35806 -14.83999 -14.77035 -14.56565 -14.31343 -14.17847 -13.98233 -13.93705 -13.62056 -13.58987 -13.35085 -13.34598 -13.20400 -13.16643 -12.92530 -12.75369 -12.25381 -12.14172 -12.05931 -11.85078 -11.75687 -11.35880 -10.65185 -10.57211 -10.09416 -5.17683 -1.31077 -0.45215 -0.38729 0.75201 1.04398 1.10468 1.58155 1.58291 1.87424 1.93684 2.27417 2.43915 2.65118 2.73729 2.89747 2.99583 3.14476 3.21052 3.32916 3.39948 3.48189 3.53818 3.71932 3.77362 3.92915 4.12450 4.15542 4.17808 4.21338 4.21587 4.31611 4.40367 4.41740 4.45201 4.56427 4.57346 4.60759 4.71044 4.76867 5.29145 5.30518 6.46627 6.62146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.139 0.861 7 C -0.087 4.087 8 C -0.656 4.656 9 H 0.163 0.837 10 S 2.593 3.407 11 O -0.944 6.944 12 O -0.909 6.909 13 O -0.648 6.648 14 C 0.125 3.875 15 C -0.100 4.100 16 C -0.085 4.085 17 O -0.527 6.527 18 Si 0.694 3.306 19 C -0.066 4.066 20 C -0.128 4.128 21 C 0.130 3.870 22 F -0.123 7.123 23 C -0.178 4.178 24 C -0.092 4.092 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.379 0.621 32 H -0.245 1.245 33 H -0.246 1.246 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.111 0.889 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -4.571 -1.854 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.115 4.115 6 H 0.157 0.843 7 C -0.125 4.125 8 C -0.762 4.762 9 H 0.181 0.819 10 S 2.688 3.312 11 O -0.942 6.942 12 O -0.907 6.907 13 O -0.607 6.607 14 C 0.083 3.917 15 C -0.103 4.103 16 C -0.195 4.195 17 O -0.332 6.332 18 Si 0.593 3.407 19 C -0.083 4.083 20 C -0.147 4.147 21 C 0.110 3.890 22 F -0.101 7.101 23 C -0.199 4.199 24 C -0.130 4.130 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.226 0.774 32 H -0.169 1.169 33 H -0.170 1.170 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.129 0.871 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.397 -2.786 -1.547 6.267 hybrid contribution -1.070 -1.004 -0.895 1.719 sum 4.326 -3.790 -2.442 6.249 Atomic orbital electron populations 1.23368 0.75607 1.04169 1.02927 1.86500 1.23985 1.32944 1.83735 1.23420 0.91449 0.81707 0.72532 1.90716 1.66810 1.36376 1.44528 1.22414 0.88065 1.00030 1.00974 0.84324 1.22643 0.93902 0.96121 0.99867 1.32346 1.08330 1.16615 1.18958 0.81944 1.05680 0.74775 0.75362 0.75351 1.93655 1.68300 1.50733 1.81547 1.93693 1.49100 1.83315 1.64580 1.85768 1.27681 1.84008 1.63202 1.17357 0.80814 0.96642 0.96882 1.20607 0.93472 0.96927 0.99275 1.25285 1.10929 1.00227 0.83035 1.86621 1.37255 1.82980 1.26379 0.95475 0.83930 0.78588 0.82676 1.20845 0.94488 0.97553 0.95439 1.21411 1.00666 0.94142 0.98520 1.17213 0.92539 0.87753 0.91458 1.91597 1.92704 1.58785 1.67036 1.21325 0.97964 1.00115 1.00512 1.22675 0.95447 0.98387 0.96506 0.91536 0.91603 0.87685 0.87491 0.87115 0.86514 0.77387 1.16916 1.17008 0.82634 0.82527 0.82568 0.87067 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.39 10.56 -39.26 -0.41 -0.80 16 3 C 0.47 0.82 7.48 36.01 0.27 1.09 16 4 O -0.50 -2.43 15.65 -18.75 -0.29 -2.72 16 5 C -0.09 0.14 4.26 -90.96 -0.39 -0.25 16 6 H 0.14 -0.59 8.14 -51.93 -0.42 -1.01 16 7 C -0.09 0.08 6.99 -25.92 -0.18 -0.10 16 8 C -0.66 1.06 3.75 -25.90 -0.10 0.96 16 9 H 0.16 -0.75 5.98 -51.93 -0.31 -1.06 16 10 S 2.59 6.62 4.91 -107.50 -0.53 6.09 16 11 O -0.94 -3.93 15.01 -67.04 -1.01 -4.94 16 12 O -0.91 -5.46 17.43 -67.04 -1.17 -6.63 16 13 O -0.65 -1.43 9.40 -51.75 -0.49 -1.92 16 14 C 0.13 0.10 4.69 -39.23 -0.18 -0.08 16 15 C -0.10 -0.02 4.80 -104.46 -0.50 -0.52 16 16 C -0.09 -0.11 2.32 36.01 0.08 -0.03 16 17 O -0.53 -0.57 12.93 -35.23 -0.46 -1.02 16 18 Si 0.69 -0.85 29.85 -169.99 -5.07 -5.92 16 19 C -0.07 0.19 8.65 -39.62 -0.34 -0.15 16 20 C -0.13 0.42 10.02 -39.49 -0.40 0.02 16 21 C 0.13 -0.24 7.30 -39.44 -0.29 -0.52 16 22 F -0.12 0.13 17.27 2.25 0.04 0.17 16 23 C -0.18 0.28 8.49 -39.37 -0.33 -0.06 16 24 C -0.09 0.17 7.20 -25.90 -0.19 -0.01 16 25 H 0.07 -0.02 8.13 -51.92 -0.42 -0.45 16 26 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 27 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 29 H 0.11 0.06 7.39 -51.93 -0.38 -0.32 16 30 H 0.12 0.43 6.10 -51.93 -0.32 0.11 16 31 H 0.38 -1.56 8.61 45.56 0.39 -1.17 16 32 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 33 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 34 H 0.16 -0.95 5.15 -52.49 -0.27 -1.22 16 35 H 0.16 -0.91 8.06 -52.49 -0.42 -1.34 16 36 H 0.16 -0.66 6.75 -52.48 -0.35 -1.02 16 37 H 0.11 -0.07 7.51 -51.93 -0.39 -0.46 16 38 H 0.11 -0.49 8.14 -51.93 -0.42 -0.91 16 LS Contribution 338.12 15.07 5.10 5.10 Total: 0.00 -12.35 338.12 -9.56 -21.91 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: -3.79 Total: -10.71 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.48 Total: 1.39 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -3.83 Total: -18.03 kcal Atomic # 9 Polarization: 0.13 SS G_CDS: 0.04 Total: 0.17 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.07 Total: -5.92 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -0.53 Total: 6.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -12.35 -9.56 -21.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.764 kcal (2) G-P(sol) polarization free energy of solvation -12.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds