Wall clock time and date at job start Mon Mar 8 2021 08:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00321 * 2 1 4 4 O 1.20828 * 119.99824 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00351 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.84841 * 48.80837 * 5 3 2 7 7 C 1.53784 * 113.61392 * 179.97438 * 5 3 2 8 8 C 1.53783 * 87.08018 * 139.98261 * 7 5 3 9 9 H 1.08994 * 113.61470 * 89.11542 * 8 7 5 10 10 S 1.81397 * 113.61614 * 219.93846 * 8 7 5 11 11 O 1.42105 * 110.54084 * 286.13422 * 10 8 7 12 12 O 1.42105 * 110.54560 * 62.88646 * 10 8 7 13 13 O 1.52198 * 104.45206 * 174.51224 * 10 8 7 14 14 C 1.35900 * 114.00108 * 75.62921 * 13 10 8 15 15 C 1.38726 * 120.04529 * 95.26032 * 14 13 10 16 16 C 1.50700 * 119.99626 * 0.02870 * 15 14 13 17 17 O 1.42899 * 109.47736 * 75.38988 * 16 15 14 18 18 Si 1.86309 * 109.46788 * 195.38615 * 16 15 14 19 19 C 1.38176 * 119.99869 * 179.76950 * 15 14 13 20 20 C 1.38205 * 120.07773 * 0.48890 * 19 15 14 21 21 C 1.38523 * 120.08558 * 359.78898 * 20 19 15 22 22 F 1.35097 * 119.99839 * 179.97438 * 21 20 19 23 23 C 1.38339 * 120.00307 * 359.95460 * 21 20 19 24 24 C 1.53778 * 113.61433 * 277.49647 * 5 3 2 25 25 H 1.09007 * 109.46899 * 299.99960 * 1 2 3 26 26 H 1.09003 * 109.47401 * 59.99713 * 1 2 3 27 27 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08994 * 113.61748 * 254.53399 * 7 5 3 29 29 H 1.09005 * 113.61198 * 25.43939 * 7 5 3 30 30 H 1.08995 * 109.47643 * 315.38121 * 16 15 14 31 31 H 0.96694 * 114.00056 * 65.06234 * 17 16 15 32 32 H 1.48497 * 109.99698 * 58.68047 * 18 16 15 33 33 H 1.48499 * 110.00066 * 179.97438 * 18 16 15 34 34 H 1.07992 * 119.95980 * 180.25594 * 19 15 14 35 35 H 1.07997 * 119.96014 * 179.76824 * 20 19 15 36 36 H 1.08006 * 120.03793 * 180.02562 * 23 21 20 37 37 H 1.08995 * 113.61674 * 334.56786 * 24 5 3 38 38 H 1.09006 * 113.61117 * 105.47171 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1078 2.7142 -0.0001 8 6 5.1807 2.2274 0.9882 9 1 6.0806 1.8485 0.5040 10 16 5.5398 3.4132 2.3132 11 8 6.2976 4.5061 1.8124 12 8 4.3872 3.6278 3.1163 13 8 6.5049 2.6766 3.2309 14 6 7.7714 2.5896 2.7459 15 6 8.7261 3.5218 3.1255 16 6 8.3591 4.6314 4.0768 17 8 8.2605 4.1089 5.4031 18 14 9.6719 5.9524 4.0259 19 6 10.0148 3.4296 2.6355 20 6 10.3518 2.4153 1.7593 21 6 9.3997 1.4861 1.3735 22 9 9.7308 0.4956 0.5165 23 6 8.1098 1.5719 1.8661 24 6 4.1906 1.1238 1.3978 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.5112 3.0285 -0.9626 29 1 3.4171 3.4407 0.4281 30 1 7.4010 5.0600 3.7830 31 1 9.0973 3.7810 5.7599 32 1 9.8064 6.4818 2.6450 33 1 9.3216 7.0530 4.9593 34 1 10.7585 4.1532 2.9346 35 1 11.3586 2.3473 1.3746 36 1 7.3671 0.8475 1.5660 37 1 3.5226 1.4153 2.2083 38 1 4.6609 0.1545 1.5634 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10564896_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:49:18 Heat of formation + Delta-G solvation = -195.354806 kcal Electronic energy + Delta-G solvation = -29532.385041 eV Core-core repulsion = 24964.965901 eV Total energy + Delta-G solvation = -4567.419140 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.070 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.08164 -42.54943 -42.01700 -39.70744 -39.44744 -38.62078 -37.75568 -37.52801 -37.50436 -32.73502 -31.76039 -29.97658 -27.84413 -27.26375 -26.90924 -25.11257 -23.57835 -23.22826 -21.91626 -20.92167 -20.04247 -19.53913 -19.12423 -18.72079 -18.34869 -17.98473 -17.63048 -17.57110 -17.14881 -16.98871 -16.73147 -16.53243 -16.08985 -15.96970 -15.44309 -15.28089 -14.84018 -14.67678 -14.59153 -14.41341 -14.14320 -14.00558 -13.89502 -13.72476 -13.58741 -13.53901 -13.46320 -13.16972 -13.10785 -12.88150 -12.60320 -12.28704 -12.09761 -11.99559 -11.92387 -11.74039 -11.43971 -10.65236 -10.37678 -9.95419 -5.13540 -1.37838 -0.29328 -0.24371 0.70664 0.94876 1.13275 1.59934 1.61933 1.95815 2.06328 2.23596 2.43140 2.67694 2.85463 2.94298 3.09569 3.31347 3.37058 3.45689 3.55591 3.58691 3.76670 3.79925 3.95705 4.13174 4.21433 4.21744 4.23493 4.24217 4.30533 4.51904 4.56344 4.59834 4.63463 4.65290 4.74277 4.83620 4.85042 4.95801 5.23741 5.52125 6.53091 6.70725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.539 6.539 5 C -0.087 4.087 6 H 0.180 0.820 7 C -0.102 4.102 8 C -0.624 4.624 9 H 0.203 0.797 10 S 2.581 3.419 11 O -0.972 6.972 12 O -0.964 6.964 13 O -0.657 6.657 14 C 0.091 3.909 15 C -0.119 4.119 16 C -0.112 4.112 17 O -0.550 6.550 18 Si 0.813 3.187 19 C -0.062 4.062 20 C -0.115 4.115 21 C 0.123 3.877 22 F -0.125 7.125 23 C -0.175 4.175 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.399 0.601 32 H -0.270 1.270 33 H -0.296 1.296 34 H 0.188 0.812 35 H 0.189 0.811 36 H 0.182 0.818 37 H 0.090 0.910 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -6.727 -3.457 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.307 3.693 4 O -0.429 6.429 5 C -0.106 4.106 6 H 0.197 0.803 7 C -0.141 4.141 8 C -0.734 4.734 9 H 0.220 0.780 10 S 2.682 3.318 11 O -0.970 6.970 12 O -0.962 6.962 13 O -0.615 6.615 14 C 0.049 3.951 15 C -0.122 4.122 16 C -0.219 4.219 17 O -0.359 6.359 18 Si 0.715 3.285 19 C -0.079 4.079 20 C -0.134 4.134 21 C 0.104 3.896 22 F -0.104 7.104 23 C -0.196 4.196 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.250 0.750 32 H -0.196 1.196 33 H -0.224 1.224 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.199 0.801 37 H 0.108 0.892 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.975 -4.965 -3.108 9.895 hybrid contribution -1.904 -0.383 -0.401 1.983 sum 6.071 -5.349 -3.510 8.819 Atomic orbital electron populations 1.23568 0.74961 1.05822 1.02447 1.86502 1.24775 1.32578 1.83338 1.24135 0.92778 0.81245 0.71192 1.90702 1.67984 1.37672 1.46543 1.22621 0.85840 1.00025 1.02127 0.80280 1.22804 0.93847 0.96444 1.00977 1.32160 1.09812 1.14928 1.16533 0.78029 1.05792 0.73849 0.76197 0.75971 1.93600 1.68520 1.52984 1.81936 1.93616 1.50995 1.84774 1.66828 1.85737 1.28586 1.83679 1.63546 1.17765 0.80255 0.98288 0.98772 1.20764 0.94947 0.96758 0.99769 1.25642 1.10551 1.02254 0.83437 1.86561 1.39363 1.83320 1.26650 0.94339 0.81122 0.74502 0.78561 1.21157 0.93656 0.98223 0.94842 1.21802 1.01762 0.92752 0.97060 1.17360 0.92730 0.88021 0.91533 1.91597 1.92682 1.58966 1.67135 1.21524 0.98950 0.99647 0.99475 1.22831 0.95055 0.99840 0.95783 0.92354 0.91852 0.84960 0.84918 0.89656 0.90136 0.74999 1.19634 1.22384 0.79544 0.79379 0.80091 0.89156 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.72 10.56 -51.41 -0.54 -1.27 16 3 C 0.46 1.85 7.48 71.24 0.53 2.38 16 4 O -0.54 -6.36 15.65 21.96 0.34 -6.01 16 5 C -0.09 0.36 4.26 -11.01 -0.05 0.31 16 6 H 0.18 -2.19 8.14 -2.39 -0.02 -2.21 16 7 C -0.10 0.19 6.99 31.12 0.22 0.41 16 8 C -0.62 2.31 3.75 31.14 0.12 2.43 16 9 H 0.20 -2.41 5.98 -2.39 -0.01 -2.42 16 10 S 2.58 19.60 4.91 -56.49 -0.28 19.32 16 11 O -0.97 -10.88 15.01 -118.57 -1.78 -12.66 16 12 O -0.96 -15.82 17.43 -118.57 -2.07 -17.89 16 13 O -0.66 -4.22 9.40 -61.52 -0.58 -4.80 16 14 C 0.09 0.18 4.69 22.50 0.11 0.29 16 15 C -0.12 -0.09 4.80 -19.76 -0.09 -0.18 16 16 C -0.11 -0.49 2.32 71.24 0.17 -0.32 16 17 O -0.55 -2.23 12.93 -148.98 -1.93 -4.16 16 18 Si 0.81 -1.65 29.85 68.60 2.05 0.40 16 19 C -0.06 0.46 8.65 22.25 0.19 0.65 16 20 C -0.11 1.06 10.02 22.33 0.22 1.28 16 21 C 0.12 -0.73 7.30 22.36 0.16 -0.57 16 22 F -0.13 0.60 17.27 44.97 0.78 1.38 16 23 C -0.18 0.80 8.49 22.41 0.19 0.99 16 24 C -0.10 0.44 7.20 31.13 0.22 0.66 16 25 H 0.06 0.04 8.13 -2.38 -0.02 0.02 16 26 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 27 H 0.13 -0.91 8.14 -2.39 -0.02 -0.92 16 28 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H 0.08 0.32 7.39 -2.38 -0.02 0.31 16 30 H 0.08 0.91 6.10 -2.39 -0.01 0.89 16 31 H 0.40 -2.97 8.61 -74.06 -0.64 -3.60 16 32 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 33 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 34 H 0.19 -2.75 5.15 -2.91 -0.01 -2.77 16 35 H 0.19 -2.96 8.06 -2.91 -0.02 -2.98 16 36 H 0.18 -2.01 6.75 -2.91 -0.02 -2.03 16 37 H 0.09 0.03 7.51 -2.39 -0.02 0.01 16 38 H 0.15 -1.76 8.14 -2.38 -0.02 -1.78 16 Total: 0.00 -35.25 338.12 -0.28 -35.53 By element: Atomic # 1 Polarization: -19.87 SS G_CDS: 0.54 Total: -19.33 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 3.19 Total: 9.51 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -6.55 Total: -46.79 kcal Atomic # 9 Polarization: 0.60 SS G_CDS: 0.78 Total: 1.38 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.05 Total: 0.40 kcal Atomic # 16 Polarization: 19.60 SS G_CDS: -0.28 Total: 19.32 kcal Total: -35.25 -0.28 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.828 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds