Wall clock time and date at job start Mon Mar 8 2021 10:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38731 * 120.00464 * 285.00764 * 4 2 1 6 6 O 1.35892 * 120.03960 * 0.02562 * 5 4 2 7 7 S 1.52205 * 113.99633 * 90.00695 * 6 5 4 8 8 O 1.42101 * 104.27288 * 191.06847 * 7 6 5 9 9 O 1.42091 * 104.27827 * 318.92331 * 7 6 5 10 10 C 1.81402 * 104.44924 * 74.99979 * 7 6 5 11 11 H 1.09001 * 112.84924 * 311.19336 * 10 7 6 12 12 C 1.53776 * 113.61853 * 82.49881 * 10 7 6 13 13 C 1.53780 * 87.08081 * 139.97716 * 12 10 7 14 14 H 1.08997 * 113.61783 * 220.01580 * 13 12 10 15 15 O 1.42903 * 113.60860 * 89.12086 * 13 12 10 16 16 C 1.42896 * 114.00059 * 112.50295 * 15 13 12 17 17 C 1.50709 * 109.47135 * 179.97438 * 16 15 13 18 18 C 1.38237 * 120.00113 * 269.72828 * 17 16 15 19 19 C 1.38229 * 120.00074 * 179.78986 * 18 17 16 20 20 C 1.38239 * 120.00033 * 0.45556 * 19 18 17 21 21 C 1.38239 * 119.99849 * 359.77186 * 20 19 18 22 22 C 1.38233 * 119.99996 * 0.02562 * 21 20 19 23 23 C 1.53773 * 87.08261 * 334.57278 * 13 12 10 24 24 C 1.38714 * 119.91428 * 180.02562 * 5 4 2 25 25 C 1.38344 * 119.92058 * 359.97438 * 24 5 4 26 26 F 1.35098 * 119.99821 * 180.02562 * 25 24 5 27 27 C 1.38519 * 120.00554 * 0.02562 * 25 24 5 28 28 C 1.38174 * 119.99936 * 104.72636 * 4 2 1 29 29 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 30 30 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 31 31 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 32 32 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 33 33 H 1.08994 * 113.61872 * 254.53477 * 12 10 7 34 34 H 1.09001 * 113.61208 * 25.43248 * 12 10 7 35 35 H 1.08998 * 109.47267 * 299.99317 * 16 15 13 36 36 H 1.09002 * 109.47490 * 59.99887 * 16 15 13 37 37 H 1.07998 * 119.99462 * 359.97438 * 18 17 16 38 38 H 1.08001 * 120.00230 * 180.25212 * 19 18 17 39 39 H 1.07995 * 119.99939 * 179.79335 * 20 19 18 40 40 H 1.07995 * 119.99964 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.99837 * 179.97438 * 22 21 20 42 42 H 1.09001 * 113.61057 * 270.87973 * 23 13 12 43 43 H 1.09002 * 113.69517 * 139.99300 * 23 13 12 44 44 H 1.07997 * 120.03700 * 179.97438 * 24 5 4 45 45 H 1.08002 * 119.96153 * 180.02562 * 27 25 24 46 46 H 1.07999 * 119.96556 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 1.8695 -2.0944 -1.3061 6 8 1.3554 -2.8100 -0.2717 7 16 -0.1448 -3.0483 -0.3690 8 8 -0.5011 -3.5639 0.9064 9 8 -0.6671 -1.8100 -0.8305 10 6 -0.3182 -4.3272 -1.6437 11 1 0.2477 -4.1030 -2.5480 12 6 -0.1008 -5.7555 -1.1171 13 6 -1.2712 -6.1818 -2.0189 14 1 -1.9362 -6.9108 -1.5558 15 8 -0.8703 -6.5545 -3.3389 16 6 -1.0477 -7.9422 -3.6302 17 6 -0.5957 -8.2212 -5.0406 18 6 -1.4958 -8.1295 -6.0858 19 6 -1.0803 -8.3812 -7.3799 20 6 0.2332 -8.7338 -7.6279 21 6 1.1322 -8.8301 -6.5822 22 6 0.7176 -8.5743 -5.2885 23 6 -1.7765 -4.7332 -1.9145 24 6 2.3331 -2.7465 -2.4393 25 6 2.8555 -2.0153 -3.4911 26 9 3.3069 -2.6488 -4.5957 27 6 2.9158 -0.6337 -3.4118 28 6 2.4486 0.0167 -2.2853 29 1 -0.3934 0.4417 0.7649 30 1 1.7923 -0.5138 0.8901 31 1 3.5346 1.7703 0.0322 32 1 1.5616 2.4678 -1.2086 33 1 0.8560 -6.1878 -1.4097 34 1 -0.3077 -5.8645 -0.0525 35 1 -0.4568 -8.5379 -2.9345 36 1 -2.1011 -8.2031 -3.5283 37 1 -2.5230 -7.8583 -5.8915 38 1 -1.7825 -8.3055 -8.1969 39 1 0.5570 -8.9336 -8.6386 40 1 2.1582 -9.1059 -6.7758 41 1 1.4199 -8.6499 -4.4715 42 1 -2.4415 -4.5628 -1.0679 43 1 -2.1730 -4.3391 -2.8502 44 1 2.2861 -3.8237 -2.5003 45 1 3.3234 -0.0636 -4.2336 46 1 2.4921 1.0942 -2.2277 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10564896_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:39:20 Heat of formation + Delta-G solvation = -111.101863 kcal Electronic energy + Delta-G solvation = -35690.804723 eV Core-core repulsion = 30749.967598 eV Total energy + Delta-G solvation = -4940.837125 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.101 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.14961 -42.40287 -40.84860 -40.00612 -39.33338 -38.08572 -37.49895 -37.07700 -36.86093 -32.86717 -32.72601 -31.86104 -31.83915 -27.58222 -27.12275 -26.78033 -26.54850 -25.02439 -23.54897 -23.21718 -22.34771 -21.96719 -21.02625 -19.64146 -19.21120 -18.87110 -18.31940 -18.04420 -17.75521 -17.58787 -17.35711 -17.06717 -16.79455 -16.71645 -16.57057 -16.18465 -15.85340 -15.73921 -15.49668 -15.33568 -15.06572 -14.78338 -14.37232 -14.29089 -14.13874 -13.96914 -13.92682 -13.86180 -13.70749 -13.52454 -13.49700 -13.27065 -13.17258 -12.96054 -12.89325 -12.79899 -12.23356 -12.16790 -12.10379 -11.95825 -11.91797 -11.82355 -11.17641 -10.67583 -10.46291 -10.19683 -9.99033 -9.87351 -9.81995 -5.05073 -1.05132 -0.35494 -0.21047 0.27424 0.45058 1.00856 1.17348 1.57817 1.83907 1.97722 2.32600 2.57782 2.76521 2.86038 2.93600 3.02632 3.17008 3.26847 3.31294 3.36183 3.53259 3.65170 3.70526 3.74662 3.81677 3.86180 4.00480 4.03047 4.06646 4.18629 4.22790 4.23079 4.28498 4.32483 4.48526 4.51385 4.52470 4.56419 4.65520 4.67261 4.68362 4.70577 4.76040 4.80944 4.86893 4.99531 5.07057 5.40253 5.48656 5.56623 5.58987 6.00829 6.07212 6.74593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.498 6.498 2 C -0.099 4.099 3 Si 0.696 3.304 4 C -0.054 4.054 5 C 0.124 3.876 6 O -0.661 6.661 7 S 2.580 3.420 8 O -0.924 6.924 9 O -0.890 6.890 10 C -0.648 4.648 11 H 0.153 0.847 12 C -0.132 4.132 13 C 0.078 3.922 14 H 0.089 0.911 15 O -0.356 6.356 16 C 0.101 3.899 17 C -0.095 4.095 18 C -0.098 4.098 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.105 4.105 24 C -0.168 4.168 25 C 0.128 3.872 26 F -0.123 7.123 27 C -0.130 4.130 28 C -0.078 4.078 29 H 0.372 0.628 30 H 0.078 0.922 31 H -0.252 1.252 32 H -0.244 1.244 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 0.087 0.083 0.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.304 6.304 2 C -0.210 4.210 3 Si 0.596 3.404 4 C -0.057 4.057 5 C 0.082 3.918 6 O -0.619 6.619 7 S 2.674 3.326 8 O -0.922 6.922 9 O -0.888 6.888 10 C -0.754 4.754 11 H 0.171 0.829 12 C -0.170 4.170 13 C 0.018 3.982 14 H 0.107 0.893 15 O -0.275 6.275 16 C 0.025 3.975 17 C -0.095 4.095 18 C -0.116 4.116 19 C -0.141 4.141 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.144 4.144 24 C -0.189 4.189 25 C 0.108 3.892 26 F -0.101 7.101 27 C -0.149 4.149 28 C -0.095 4.095 29 H 0.219 0.781 30 H 0.096 0.904 31 H -0.176 1.176 32 H -0.169 1.169 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.175 0.825 45 H 0.172 0.828 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.718 0.844 -0.396 1.177 hybrid contribution 0.197 -1.509 -0.663 1.660 sum 0.915 -0.666 -1.059 1.550 Atomic orbital electron populations 1.87083 1.13955 1.80684 1.48649 1.24770 0.88766 1.11164 0.96297 0.94693 0.80625 0.77626 0.87491 1.19556 0.98538 0.91396 0.96168 1.17278 1.01166 0.88755 0.84605 1.85730 1.50642 1.73937 1.51564 1.06131 0.73525 0.76291 0.76637 1.93642 1.79531 1.82144 1.36869 1.93830 1.76384 1.36257 1.82358 1.32305 1.07908 1.15516 1.19692 0.82886 1.23238 1.01961 0.90749 1.01057 1.22832 0.95391 0.95932 0.84000 0.89312 1.87978 1.85322 1.24802 1.29401 1.21447 1.00290 0.82612 0.93127 1.19553 0.94315 1.01511 0.94161 1.21085 0.99578 0.98546 0.92407 1.21201 0.96316 0.99778 0.96789 1.21271 0.93633 0.98747 0.99347 1.21197 0.99917 1.00285 0.92710 1.21074 0.95000 0.98435 0.97170 1.22815 0.90964 0.95953 1.04627 1.21292 1.02887 1.02204 0.92498 1.17207 0.98035 0.90294 0.83640 1.91593 1.86316 1.82165 1.50031 1.21344 1.01025 0.92628 0.99889 1.20850 0.96713 1.00340 0.91620 0.78113 0.90426 1.17637 1.16891 0.88898 0.86887 0.91989 0.91894 0.85869 0.85710 0.85799 0.85743 0.85963 0.87711 0.88119 0.82506 0.82841 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -0.96 8.71 -60.50 -0.53 -1.48 16 2 C -0.10 -0.11 2.29 36.00 0.08 -0.02 16 3 Si 0.70 -0.91 30.21 -169.99 -5.13 -6.05 16 4 C -0.05 -0.14 4.90 -104.47 -0.51 -0.65 16 5 C 0.12 0.33 4.78 -39.22 -0.19 0.14 16 6 O -0.66 -1.91 9.40 -51.73 -0.49 -2.40 16 7 S 2.58 7.14 5.09 -107.50 -0.55 6.59 16 8 O -0.92 -4.76 17.27 -67.04 -1.16 -5.92 16 9 O -0.89 -3.97 12.27 -70.99 -0.87 -4.84 16 10 C -0.65 -0.26 3.96 -25.92 -0.10 -0.37 16 11 H 0.15 -0.02 6.10 -51.93 -0.32 -0.34 16 12 C -0.13 0.06 7.47 -25.92 -0.19 -0.13 16 13 C 0.08 -0.04 4.37 -25.92 -0.11 -0.15 16 14 H 0.09 -0.21 7.87 -51.93 -0.41 -0.62 16 15 O -0.36 -0.44 10.25 -35.23 -0.36 -0.80 16 16 C 0.10 -0.01 5.90 36.01 0.21 0.20 16 17 C -0.10 -0.12 5.51 -104.62 -0.58 -0.70 16 18 C -0.10 -0.11 9.70 -39.59 -0.38 -0.49 16 19 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 20 C -0.11 -0.09 10.05 -39.58 -0.40 -0.48 16 21 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 22 C -0.10 -0.11 9.70 -39.58 -0.38 -0.49 16 23 C -0.10 0.04 7.50 -25.93 -0.19 -0.16 16 24 C -0.17 -0.20 8.48 -39.37 -0.33 -0.53 16 25 C 0.13 0.15 7.30 -39.44 -0.29 -0.13 16 26 F -0.12 -0.23 17.27 2.25 0.04 -0.19 16 27 C -0.13 -0.03 10.02 -39.49 -0.40 -0.43 16 28 C -0.08 -0.08 8.65 -39.61 -0.34 -0.43 16 29 H 0.37 -1.03 8.74 45.56 0.40 -0.63 16 30 H 0.08 0.01 7.83 -51.93 -0.41 -0.40 16 31 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 32 H -0.24 -0.17 6.74 56.52 0.38 0.21 16 33 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 34 H 0.11 -0.11 7.43 -51.93 -0.39 -0.50 16 35 H 0.06 -0.08 8.09 -51.93 -0.42 -0.50 16 36 H 0.06 -0.09 8.08 -51.93 -0.42 -0.51 16 37 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 38 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 39 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 40 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 41 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 42 H 0.10 -0.19 8.10 -51.93 -0.42 -0.61 16 43 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 44 H 0.16 -0.14 7.25 -52.49 -0.38 -0.52 16 45 H 0.15 -0.35 8.06 -52.49 -0.42 -0.77 16 46 H 0.15 -0.04 4.90 -52.49 -0.26 -0.30 16 LS Contribution 394.02 15.07 5.94 5.94 Total: 0.00 -10.15 394.02 -13.63 -23.78 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -5.62 Total: -8.82 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.91 Total: -5.83 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -3.40 Total: -15.44 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.04 Total: -0.19 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.13 Total: -6.05 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -0.55 Total: 6.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -10.15 -13.63 -23.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.317 kcal (2) G-P(sol) polarization free energy of solvation -10.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds