Wall clock time and date at job start Mon Mar 8 2021 10:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47382 * 2 1 4 4 C 1.34231 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99845 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00154 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47358 * 299.99698 * 6 4 3 8 8 C 1.52997 * 109.47078 * 60.00281 * 6 4 3 9 9 C 1.53002 * 109.46817 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.46972 * 299.99733 * 9 8 6 11 11 F 1.39904 * 109.47140 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47467 * 299.99743 * 10 9 8 13 13 S 1.81399 * 109.47258 * 180.02562 * 12 10 9 14 14 O 1.42103 * 110.54138 * 291.62873 * 13 12 10 15 15 O 1.42093 * 110.54179 * 68.37932 * 13 12 10 16 16 O 1.52196 * 104.44686 * 180.02562 * 13 12 10 17 17 C 1.35900 * 114.00283 * 75.00040 * 16 13 12 18 18 C 1.38731 * 120.04122 * 90.00316 * 17 16 13 19 19 C 1.50698 * 120.00106 * 359.94620 * 18 17 16 20 20 O 1.42903 * 109.46862 * 75.01292 * 19 18 17 21 21 Si 1.86308 * 109.46896 * 195.00357 * 19 18 17 22 22 C 1.38176 * 119.99106 * 179.97438 * 18 17 16 23 23 C 1.38205 * 120.08437 * 359.97438 * 22 18 17 24 24 C 1.38525 * 120.08321 * 0.02562 * 23 22 18 25 25 F 1.35101 * 119.99610 * 180.02562 * 24 23 22 26 26 C 1.38348 * 120.00192 * 359.74476 * 24 23 22 27 27 C 1.52997 * 109.47131 * 60.00459 * 10 9 8 28 28 C 1.52999 * 109.46991 * 299.99311 * 27 10 9 29 29 H 1.09008 * 109.46827 * 300.00075 * 1 2 3 30 30 H 1.09002 * 109.46888 * 59.99374 * 1 2 3 31 31 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46932 * 240.00410 * 2 1 3 33 33 H 1.09001 * 109.47487 * 120.00163 * 2 1 3 34 34 H 1.09002 * 109.47153 * 299.99793 * 8 6 4 35 35 H 1.08996 * 109.46952 * 59.99965 * 8 6 4 36 36 H 1.08996 * 109.47407 * 60.00219 * 9 8 6 37 37 H 1.09000 * 109.46986 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47550 * 300.01097 * 12 10 9 39 39 H 1.09001 * 109.46322 * 60.00437 * 12 10 9 40 40 H 1.08991 * 109.47789 * 315.00831 * 19 18 17 41 41 H 0.96705 * 113.99303 * 299.99405 * 20 19 18 42 42 H 1.48495 * 109.99889 * 298.68583 * 21 19 18 43 43 H 1.48501 * 109.99524 * 60.00697 * 21 19 18 44 44 H 1.08006 * 119.95554 * 180.02562 * 22 18 17 45 45 H 1.07990 * 119.95785 * 180.02562 * 23 22 18 46 46 H 1.08008 * 120.03645 * 180.25119 * 26 24 23 47 47 H 1.09002 * 109.47153 * 179.97438 * 27 10 9 48 48 H 1.08993 * 109.47194 * 60.00154 * 27 10 9 49 49 H 1.08993 * 109.47839 * 300.00447 * 28 27 10 50 50 H 1.09000 * 109.47160 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5853 3.4698 -0.8888 8 6 3.4489 3.6839 1.2505 9 6 4.0332 5.0979 1.2507 10 6 5.5611 5.0183 1.2509 11 9 6.0955 6.3112 1.2517 12 6 6.0328 4.2714 2.5001 13 16 7.8444 4.1776 2.5007 14 8 8.3000 3.3272 1.4574 15 8 8.4103 5.4665 2.6950 16 8 8.1851 3.4213 3.7767 17 6 7.9426 2.0858 3.7092 18 6 8.9342 1.2212 3.2689 19 6 10.2809 1.7629 2.8641 20 8 11.0218 2.1195 4.0328 21 14 11.2130 0.4610 1.9114 22 6 8.6866 -0.1365 3.2012 23 6 7.4521 -0.6350 3.5720 24 6 6.4596 0.2253 4.0121 25 9 5.2536 -0.2639 4.3747 26 6 6.7052 1.5848 4.0858 27 6 6.0330 4.2717 0.0016 28 6 5.4488 2.8577 0.0013 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.3603 3.7410 1.2501 35 1 3.7845 3.1514 2.1403 36 1 3.6972 5.6301 0.3608 37 1 3.6967 5.6300 2.1405 38 1 5.6965 4.8032 3.3902 39 1 5.6165 3.2640 2.4999 40 1 10.1447 2.6440 2.2373 41 1 10.5950 2.7945 4.5782 42 1 11.4330 -0.7334 2.7657 43 1 10.4529 0.0815 0.6934 44 1 9.4592 -0.8092 2.8588 45 1 7.2610 -1.6965 3.5187 46 1 5.9331 2.2557 4.4327 47 1 7.1216 4.2154 0.0015 48 1 5.6971 4.8039 -0.8883 49 1 5.7847 2.3255 0.8912 50 1 5.7854 2.3256 -0.8885 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10564896_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:50:45 Heat of formation + Delta-G solvation = -276.643374 kcal Electronic energy + Delta-G solvation = -43077.107081 eV Core-core repulsion = 37414.558553 eV Total energy + Delta-G solvation = -5662.548528 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.29585 -49.14172 -42.79521 -41.89748 -39.73979 -39.57069 -38.65536 -37.83612 -37.71392 -37.50789 -33.69112 -32.91053 -32.45467 -32.16758 -31.95048 -29.36325 -27.04095 -25.56018 -25.16985 -24.23423 -23.65046 -23.55211 -22.25654 -21.84360 -20.68738 -19.97270 -19.47839 -19.13840 -18.81542 -18.60147 -18.12709 -17.90334 -17.71768 -17.63802 -17.32755 -17.14944 -16.93452 -16.77953 -16.41752 -16.17775 -15.95776 -15.59212 -15.56044 -15.34875 -15.17975 -14.90324 -14.54749 -14.44195 -14.24726 -14.19565 -14.12567 -13.96835 -13.87378 -13.76468 -13.66206 -13.58441 -13.36880 -13.33205 -13.08612 -13.01365 -12.95452 -12.90391 -12.71217 -12.54888 -12.36134 -12.23454 -12.06019 -11.67674 -11.62200 -11.55528 -11.42107 -11.29205 -11.16791 -10.63610 -10.15510 -4.90308 -1.50789 -0.50517 -0.47812 0.56939 1.05450 1.22585 1.55776 1.60798 1.76830 1.83256 2.10451 2.45867 2.69385 2.71579 3.01055 3.03789 3.11795 3.16537 3.27681 3.32507 3.49190 3.49808 3.60942 3.62189 3.67279 3.72690 3.90073 3.95450 3.97947 4.02040 4.10755 4.11995 4.15693 4.20694 4.29632 4.32798 4.35688 4.48467 4.50584 4.57595 4.59578 4.72323 4.73486 4.79355 4.84632 4.87265 4.88033 4.97507 5.05928 5.11324 5.15396 5.26315 5.41225 6.34543 6.61762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.464 3.536 5 O -0.536 6.536 6 C -0.083 4.083 7 H 0.140 0.860 8 C -0.112 4.112 9 C -0.122 4.122 10 C 0.131 3.869 11 F -0.207 7.207 12 C -0.681 4.681 13 S 2.582 3.418 14 O -0.950 6.950 15 O -0.945 6.945 16 O -0.659 6.659 17 C 0.088 3.912 18 C -0.103 4.103 19 C -0.124 4.124 20 O -0.537 6.537 21 Si 0.807 3.193 22 C -0.084 4.084 23 C -0.117 4.117 24 C 0.121 3.879 25 F -0.124 7.124 26 C -0.162 4.162 27 C -0.174 4.174 28 C -0.100 4.100 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.187 0.813 39 H 0.173 0.827 40 H 0.082 0.918 41 H 0.373 0.627 42 H -0.257 1.257 43 H -0.256 1.256 44 H 0.157 0.843 45 H 0.178 0.822 46 H 0.186 0.814 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.067 0.933 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -1.910 -0.782 6.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.425 6.425 6 C -0.102 4.102 7 H 0.158 0.842 8 C -0.149 4.149 9 C -0.160 4.160 10 C 0.112 3.888 11 F -0.187 7.187 12 C -0.809 4.809 13 S 2.681 3.319 14 O -0.948 6.948 15 O -0.944 6.944 16 O -0.618 6.618 17 C 0.046 3.954 18 C -0.106 4.106 19 C -0.230 4.230 20 O -0.344 6.344 21 Si 0.704 3.296 22 C -0.102 4.102 23 C -0.136 4.136 24 C 0.101 3.899 25 F -0.103 7.103 26 C -0.182 4.182 27 C -0.211 4.211 28 C -0.138 4.138 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.204 0.796 39 H 0.191 0.809 40 H 0.099 0.901 41 H 0.222 0.778 42 H -0.182 1.182 43 H -0.181 1.181 44 H 0.175 0.825 45 H 0.195 0.805 46 H 0.203 0.797 47 H 0.102 0.898 48 H 0.137 0.863 49 H 0.085 0.915 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.308 -3.210 -1.312 6.341 hybrid contribution -1.905 0.667 1.060 2.279 sum -7.213 -2.543 -0.252 7.652 Atomic orbital electron populations 1.21822 0.90726 1.04175 1.03822 1.23230 0.96853 0.79414 1.02395 1.86506 1.24029 1.33306 1.83442 1.24127 0.80692 0.93009 0.71321 1.90693 1.61104 1.44308 1.46439 1.21314 0.95487 0.89100 1.04274 0.84207 1.21642 1.03398 0.94237 0.95644 1.22081 0.88728 0.98252 1.06944 1.20727 0.97979 0.77677 0.92444 1.92982 1.87943 1.40351 1.97432 1.31602 1.25818 1.13717 1.09812 1.05819 0.78931 0.74125 0.73028 1.93640 1.78833 1.65574 1.56763 1.93659 1.76183 1.40805 1.83721 1.85715 1.86547 1.26444 1.63103 1.17541 0.94692 0.77321 1.05817 1.20740 0.96888 0.94383 0.98600 1.26005 0.93397 1.10417 0.93192 1.86717 1.48051 1.62801 1.36796 0.91853 0.87999 0.72734 0.77031 1.21031 0.97826 0.93409 0.97887 1.21697 0.91573 1.02767 0.97555 1.17296 0.81885 0.91221 0.99501 1.91591 1.41689 1.87977 1.89009 1.21491 0.97419 0.96144 1.03157 1.22654 1.03044 0.96764 0.98673 1.21380 0.92348 0.95496 1.04572 0.91060 0.91235 0.88818 0.91606 0.91432 0.87382 0.90412 0.87532 0.87671 0.79563 0.80922 0.90054 0.77819 1.18243 1.18085 0.82550 0.80504 0.79694 0.89762 0.86285 0.91463 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.82 10.29 71.98 0.74 1.57 16 2 C 0.05 -0.07 6.19 71.98 0.45 0.38 16 3 O -0.36 -0.01 10.12 -51.43 -0.52 -0.53 16 4 C 0.46 0.53 7.26 71.24 0.52 1.05 16 5 O -0.54 -4.21 15.73 21.96 0.35 -3.86 16 6 C -0.08 0.42 2.63 -11.54 -0.03 0.39 16 7 H 0.14 -1.29 8.14 -2.39 -0.02 -1.31 16 8 C -0.11 0.98 4.86 30.59 0.15 1.13 16 9 C -0.12 1.05 5.19 30.59 0.16 1.21 16 10 C 0.13 -0.36 1.10 -10.79 -0.01 -0.37 16 11 F -0.21 -0.72 16.08 44.97 0.72 0.00 16 12 C -0.68 2.66 4.06 71.98 0.29 2.96 16 13 S 2.58 12.15 4.27 -56.49 -0.24 11.90 16 14 O -0.95 -6.51 11.85 -118.57 -1.41 -7.91 16 15 O -0.95 -11.86 17.60 -118.57 -2.09 -13.95 16 16 O -0.66 -2.28 9.04 -61.52 -0.56 -2.84 16 17 C 0.09 0.25 4.73 22.50 0.11 0.36 16 18 C -0.10 -0.49 4.68 -19.76 -0.09 -0.59 16 19 C -0.12 -0.71 2.19 71.24 0.16 -0.55 16 20 O -0.54 -3.26 12.65 -148.98 -1.89 -5.15 16 21 Si 0.81 1.37 30.40 68.60 2.09 3.46 16 22 C -0.08 -0.16 8.65 22.25 0.19 0.03 16 23 C -0.12 0.10 10.02 22.33 0.22 0.32 16 24 C 0.12 -0.03 7.30 22.36 0.16 0.14 16 25 F -0.12 -0.08 17.27 44.97 0.78 0.69 16 26 C -0.16 0.23 8.44 22.41 0.19 0.42 16 27 C -0.17 0.37 4.71 30.59 0.14 0.51 16 28 C -0.10 0.18 4.22 30.60 0.13 0.31 16 29 H 0.07 -0.42 8.14 -2.38 -0.02 -0.44 16 30 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 33 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 34 H 0.11 -1.15 8.11 -2.39 -0.02 -1.17 16 35 H 0.08 -0.74 6.43 -2.39 -0.02 -0.76 16 36 H 0.11 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 38 H 0.19 -1.87 8.14 -2.39 -0.02 -1.89 16 39 H 0.17 -1.34 3.29 -2.39 -0.01 -1.35 16 40 H 0.08 0.55 5.42 -2.39 -0.01 0.54 16 41 H 0.37 1.03 8.60 -74.05 -0.64 0.39 16 42 H -0.26 -0.80 6.81 99.48 0.68 -0.12 16 43 H -0.26 -1.10 7.11 99.48 0.71 -0.39 16 44 H 0.16 -0.05 4.93 -2.91 -0.01 -0.06 16 45 H 0.18 -1.06 8.06 -2.92 -0.02 -1.08 16 46 H 0.19 -1.58 7.52 -2.91 -0.02 -1.60 16 47 H 0.08 0.11 5.47 -2.39 -0.01 0.10 16 48 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.07 -0.04 6.39 -2.39 -0.02 -0.06 16 50 H 0.08 0.01 8.10 -2.39 -0.02 -0.01 16 Total: 0.00 -23.51 409.19 1.10 -22.42 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: 0.39 Total: -13.50 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.47 Total: 9.27 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -6.11 Total: -34.24 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 1.50 Total: 0.69 kcal Atomic # 14 Polarization: 1.37 SS G_CDS: 2.09 Total: 3.46 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -0.24 Total: 11.90 kcal Total: -23.51 1.10 -22.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.227 kcal (2) G-P(sol) polarization free energy of solvation -23.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds