Wall clock time and date at job start Mon Mar 8 2021 10:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45207 * 109.47305 * 2 1 4 4 C 1.34224 * 117.00435 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99713 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00077 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.47148 * 299.99781 * 6 4 3 8 8 C 1.52998 * 109.47185 * 60.00309 * 6 4 3 9 9 C 1.52999 * 109.47337 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.46790 * 299.99708 * 9 8 6 11 11 F 1.39895 * 109.47572 * 299.99956 * 10 9 8 12 12 C 1.53003 * 109.46724 * 179.97438 * 10 9 8 13 13 S 1.81402 * 109.46881 * 60.00322 * 12 10 9 14 14 O 1.42103 * 110.54243 * 62.04099 * 13 12 10 15 15 O 1.42099 * 110.54578 * 285.28936 * 13 12 10 16 16 O 1.52201 * 104.44984 * 173.66309 * 13 12 10 17 17 C 1.35901 * 114.00082 * 74.09589 * 16 13 12 18 18 C 1.38727 * 120.04133 * 95.65340 * 17 16 13 19 19 C 1.50706 * 119.99964 * 0.02562 * 18 17 16 20 20 O 1.42905 * 109.47336 * 75.53577 * 19 18 17 21 21 Si 1.86306 * 109.46661 * 195.53051 * 19 18 17 22 22 C 1.38171 * 119.99588 * 180.02562 * 18 17 16 23 23 C 1.38208 * 120.08001 * 359.97438 * 22 18 17 24 24 C 1.38516 * 120.08441 * 0.03859 * 23 22 18 25 25 F 1.35100 * 119.99877 * 179.97438 * 24 23 22 26 26 C 1.38346 * 120.00579 * 359.95942 * 24 23 22 27 27 C 1.52998 * 109.47137 * 60.00572 * 10 9 8 28 28 C 1.53003 * 109.46559 * 299.99177 * 27 10 9 29 29 H 1.08995 * 109.47260 * 59.99729 * 1 2 3 30 30 H 1.08998 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46973 * 299.99980 * 1 2 3 32 32 H 1.09002 * 109.47371 * 240.00268 * 2 1 3 33 33 H 1.08996 * 109.47540 * 119.99807 * 2 1 3 34 34 H 1.08997 * 109.46707 * 299.99977 * 8 6 4 35 35 H 1.09007 * 109.47163 * 59.99801 * 8 6 4 36 36 H 1.08998 * 109.47026 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46936 * 60.00055 * 9 8 6 38 38 H 1.08996 * 109.47778 * 300.00501 * 12 10 9 39 39 H 1.09006 * 109.46818 * 179.97438 * 12 10 9 40 40 H 1.08993 * 109.47243 * 315.52675 * 19 18 17 41 41 H 0.96702 * 114.00143 * 66.08132 * 20 19 18 42 42 H 1.48502 * 109.99696 * 179.97438 * 21 19 18 43 43 H 1.48497 * 110.00100 * 301.31824 * 21 19 18 44 44 H 1.08006 * 119.96284 * 180.02562 * 22 18 17 45 45 H 1.08003 * 119.95957 * 180.02562 * 23 22 18 46 46 H 1.08001 * 120.03820 * 180.29390 * 26 24 23 47 47 H 1.08994 * 109.47837 * 59.99407 * 27 10 9 48 48 H 1.09001 * 109.47232 * 180.02562 * 27 10 9 49 49 H 1.09003 * 109.47176 * 179.97438 * 28 27 10 50 50 H 1.08996 * 109.47778 * 300.00069 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 1 3.5844 3.4693 -0.8911 8 6 3.4496 3.6848 1.2481 9 6 4.0348 5.0984 1.2478 10 6 5.5627 5.0178 1.2476 11 9 5.9939 4.3348 2.3898 12 6 6.1479 6.4314 1.2467 13 16 5.5894 7.3180 2.7275 14 8 6.0555 6.6691 3.9026 15 8 4.2281 7.7033 2.5943 16 8 6.3564 8.6322 2.6952 17 6 5.9054 9.5127 1.7633 18 6 5.0011 10.5016 2.1224 19 6 4.5187 10.6003 3.5468 20 8 5.5466 11.1704 4.3595 21 14 3.0022 11.6804 3.6152 22 6 4.5429 11.3959 1.1741 23 6 4.9847 11.3071 -0.1324 24 6 5.8873 10.3209 -0.4947 25 9 6.3177 10.2354 -1.7724 26 6 6.3485 9.4236 0.4520 27 6 6.0338 4.2706 -0.0017 28 6 5.4485 2.8569 -0.0013 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3611 3.7418 1.2484 35 1 3.7859 3.1528 2.1381 36 1 3.6988 5.6309 2.1375 37 1 3.6989 5.6305 0.3578 38 1 5.8120 6.9633 0.3565 39 1 7.2365 6.3740 1.2470 40 1 4.2729 9.6050 3.9169 41 1 5.7512 12.0912 4.1464 42 1 2.5162 11.7853 5.0145 43 1 3.3161 13.0309 3.0835 44 1 3.8392 12.1658 1.4544 45 1 4.6255 12.0075 -0.8720 46 1 7.0560 8.6574 0.1711 47 1 5.6979 4.8027 -0.8917 48 1 7.1223 4.2127 -0.0016 49 1 5.7838 2.3247 -0.8915 50 1 5.7844 2.3247 0.8886 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10564896_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:50:50 Heat of formation + Delta-G solvation = -280.744936 kcal Electronic energy + Delta-G solvation = -41170.799460 eV Core-core repulsion = 35508.073075 eV Total energy + Delta-G solvation = -5662.726385 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -50.08079 -49.10684 -42.54956 -41.78235 -39.48417 -39.10442 -38.52472 -37.85063 -37.67708 -37.41785 -34.29137 -32.77167 -32.56481 -32.09168 -31.75223 -29.12017 -26.93099 -25.35135 -24.88179 -24.16024 -23.53953 -23.25222 -22.09520 -21.74016 -20.86570 -19.91547 -19.22852 -19.11159 -18.79540 -18.41154 -17.86590 -17.71551 -17.68453 -17.50427 -17.17441 -16.82145 -16.77039 -16.72369 -16.28782 -16.15399 -16.05661 -15.51970 -15.34186 -15.19701 -14.98467 -14.87097 -14.71450 -14.51559 -14.33468 -14.08689 -13.96282 -13.81136 -13.72047 -13.53801 -13.48402 -13.44312 -13.25311 -13.19546 -13.17748 -13.09970 -12.91405 -12.77938 -12.60654 -12.47786 -12.30699 -12.19781 -11.96966 -11.76396 -11.73976 -11.55905 -11.36082 -11.15216 -10.80860 -10.39000 -9.96031 -4.93977 -1.34523 -0.29127 -0.25112 0.77088 1.07220 1.16568 1.49903 1.60221 1.92308 2.05022 2.24657 2.61548 2.80437 2.90959 3.08352 3.24723 3.30677 3.34071 3.35081 3.48777 3.52676 3.56480 3.69417 3.75636 3.78630 3.93576 3.96251 4.01220 4.03256 4.03904 4.13734 4.26221 4.29246 4.30911 4.31190 4.51877 4.56891 4.61953 4.62810 4.75304 4.78503 4.80801 4.84446 4.88689 4.89640 4.93774 4.96217 4.99826 5.09082 5.13483 5.24198 5.43240 5.51711 6.43437 6.63685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.076 4.076 7 H 0.151 0.849 8 C -0.111 4.111 9 C -0.170 4.170 10 C 0.121 3.879 11 F -0.214 7.214 12 C -0.669 4.669 13 S 2.580 3.420 14 O -0.963 6.963 15 O -0.947 6.947 16 O -0.664 6.664 17 C 0.091 3.909 18 C -0.109 4.109 19 C -0.122 4.122 20 O -0.546 6.546 21 Si 0.787 3.213 22 C -0.070 4.070 23 C -0.113 4.113 24 C 0.126 3.874 25 F -0.126 7.126 26 C -0.177 4.177 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.198 0.802 39 H 0.177 0.823 40 H 0.098 0.902 41 H 0.389 0.611 42 H -0.302 1.302 43 H -0.232 1.232 44 H 0.179 0.821 45 H 0.185 0.815 46 H 0.180 0.820 47 H 0.130 0.870 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 6.210 -10.426 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.095 4.095 7 H 0.169 0.831 8 C -0.149 4.149 9 C -0.207 4.207 10 C 0.102 3.898 11 F -0.195 7.195 12 C -0.798 4.798 13 S 2.679 3.321 14 O -0.961 6.961 15 O -0.945 6.945 16 O -0.623 6.623 17 C 0.049 3.951 18 C -0.112 4.112 19 C -0.228 4.228 20 O -0.354 6.354 21 Si 0.687 3.313 22 C -0.087 4.087 23 C -0.133 4.133 24 C 0.106 3.894 25 F -0.104 7.104 26 C -0.197 4.197 27 C -0.160 4.160 28 C -0.149 4.149 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.216 0.784 39 H 0.195 0.805 40 H 0.116 0.884 41 H 0.239 0.761 42 H -0.229 1.229 43 H -0.156 1.156 44 H 0.196 0.804 45 H 0.203 0.797 46 H 0.197 0.803 47 H 0.148 0.852 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.398 6.170 -9.075 12.229 hybrid contribution 2.054 -0.873 0.558 2.301 sum -3.343 5.297 -8.517 10.572 Atomic orbital electron populations 1.21820 0.90540 1.04226 1.03870 1.23244 0.97015 0.79442 1.02324 1.86508 1.24118 1.33332 1.83433 1.24275 0.80626 0.93268 0.71033 1.90678 1.61207 1.44516 1.46731 1.21287 0.96273 0.88581 1.03341 0.83135 1.21478 1.03075 0.94233 0.96071 1.22708 0.91449 0.99165 1.07402 1.20904 0.95550 0.87921 0.85431 1.92955 1.91433 1.81742 1.53361 1.31529 1.16050 1.08426 1.23823 1.05864 0.74487 0.74268 0.77520 1.93641 1.81674 1.74580 1.46176 1.93626 1.34752 1.78866 1.87281 1.85775 1.72315 1.42589 1.61642 1.17763 0.98470 0.93237 0.85581 1.20618 0.96706 0.95978 0.97900 1.25664 1.01812 1.07450 0.87848 1.86676 1.56577 1.32471 1.59706 0.93585 0.78480 0.77340 0.81938 1.21269 0.98566 0.97606 0.91300 1.21752 0.95782 0.97840 0.97883 1.17330 0.96642 0.96495 0.78906 1.91600 1.88257 1.95589 1.34963 1.21520 1.03599 1.04121 0.90484 1.22162 1.03035 0.94584 0.96255 1.21474 0.92033 0.97517 1.03860 0.90892 0.88721 0.91299 0.91280 0.91911 0.87704 0.92561 0.90487 0.84008 0.78418 0.80547 0.88411 0.76070 1.22949 1.15642 0.80401 0.79738 0.80312 0.85179 0.88528 0.89382 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.12 10.12 -51.36 -0.52 -1.64 16 4 C 0.46 2.10 7.25 71.23 0.52 2.61 16 5 O -0.54 -6.28 15.73 21.96 0.35 -5.94 16 6 C -0.08 0.21 2.63 -11.54 -0.03 0.18 16 7 H 0.15 -1.48 8.14 -2.39 -0.02 -1.50 16 8 C -0.11 0.21 5.01 30.59 0.15 0.36 16 9 C -0.17 0.64 4.56 30.59 0.14 0.78 16 10 C 0.12 -0.26 0.88 -10.79 -0.01 -0.27 16 11 F -0.21 -1.58 14.81 44.97 0.67 -0.91 16 12 C -0.67 3.86 4.27 71.98 0.31 4.17 16 13 S 2.58 13.39 4.20 -56.49 -0.24 13.16 16 14 O -0.96 -15.41 17.31 -118.57 -2.05 -17.47 16 15 O -0.95 -4.66 13.16 -118.57 -1.56 -6.22 16 16 O -0.66 -3.57 9.40 -61.53 -0.58 -4.15 16 17 C 0.09 0.03 4.71 22.50 0.11 0.14 16 18 C -0.11 0.10 4.83 -19.76 -0.10 0.01 16 19 C -0.12 -0.34 2.33 71.24 0.17 -0.17 16 20 O -0.55 -3.01 12.94 -148.98 -1.93 -4.94 16 21 Si 0.79 -2.92 30.17 68.60 2.07 -0.85 16 22 C -0.07 0.57 8.65 22.25 0.19 0.76 16 23 C -0.11 1.15 10.02 22.33 0.22 1.37 16 24 C 0.13 -0.91 7.30 22.36 0.16 -0.74 16 25 F -0.13 0.73 17.27 44.97 0.78 1.50 16 26 C -0.18 1.04 8.37 22.41 0.19 1.23 16 27 C -0.12 0.86 5.00 30.59 0.15 1.02 16 28 C -0.11 0.18 4.37 30.60 0.13 0.32 16 29 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 32 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 33 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 34 H 0.10 -0.44 8.11 -2.39 -0.02 -0.46 16 35 H 0.06 0.17 7.80 -2.38 -0.02 0.15 16 36 H 0.08 -0.03 5.76 -2.39 -0.01 -0.04 16 37 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 38 H 0.20 -2.93 6.60 -2.39 -0.02 -2.94 16 39 H 0.18 -1.75 8.14 -2.39 -0.02 -1.77 16 40 H 0.10 0.69 6.08 -2.39 -0.01 0.67 16 41 H 0.39 -1.36 8.59 -74.06 -0.64 -1.99 16 42 H -0.30 -1.52 7.11 99.48 0.71 -0.81 16 43 H -0.23 1.54 6.67 99.48 0.66 2.20 16 44 H 0.18 -2.36 4.86 -2.91 -0.01 -2.38 16 45 H 0.19 -2.96 8.06 -2.91 -0.02 -2.98 16 46 H 0.18 -2.12 7.01 -2.91 -0.02 -2.14 16 47 H 0.13 -1.89 8.14 -2.39 -0.02 -1.91 16 48 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 49 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 50 H 0.05 0.24 7.76 -2.39 -0.02 0.23 16 Total: 0.00 -34.03 415.66 0.84 -33.20 By element: Atomic # 1 Polarization: -19.65 SS G_CDS: 0.36 Total: -19.29 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 3.49 Total: 13.54 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -6.29 Total: -40.35 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 1.44 Total: 0.59 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.07 Total: -0.85 kcal Atomic # 16 Polarization: 13.39 SS G_CDS: -0.24 Total: 13.16 kcal Total: -34.03 0.84 -33.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.547 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds