Wall clock time and date at job start Mon Mar 8 2021 08:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53001 * 112.84798 * 291.84935 * 3 2 1 5 5 F 1.39903 * 109.47091 * 65.66002 * 4 3 2 6 6 F 1.39896 * 109.47104 * 185.65427 * 4 3 2 7 7 F 1.39897 * 109.47289 * 305.65700 * 4 3 2 8 8 C 1.53779 * 113.61564 * 160.54441 * 3 2 1 9 9 C 1.53785 * 87.07829 * 270.88277 * 8 3 2 10 10 H 1.09001 * 113.61270 * 220.01522 * 9 8 3 11 11 C 1.52996 * 113.69080 * 89.12889 * 9 8 3 12 12 S 1.81406 * 109.47307 * 87.46109 * 11 9 8 13 13 O 1.42103 * 110.54007 * 291.62630 * 12 11 9 14 14 O 1.42103 * 110.54091 * 68.37559 * 12 11 9 15 15 O 1.52200 * 104.45120 * 179.97438 * 12 11 9 16 16 C 1.35899 * 113.99761 * 74.99709 * 15 12 11 17 17 C 1.38733 * 120.03783 * 90.00197 * 16 15 12 18 18 C 1.50697 * 120.00297 * 359.95622 * 17 16 15 19 19 O 1.42902 * 109.47475 * 74.99769 * 18 17 16 20 20 Si 1.86306 * 109.46994 * 195.00133 * 18 17 16 21 21 C 1.38177 * 119.99147 * 179.97438 * 17 16 15 22 22 C 1.38203 * 120.08227 * 0.02562 * 21 17 16 23 23 C 1.38519 * 120.08453 * 359.97438 * 22 21 17 24 24 F 1.35098 * 119.99606 * 180.02562 * 23 22 21 25 25 C 1.38344 * 120.00399 * 359.74456 * 23 22 21 26 26 C 1.53777 * 87.08215 * 334.56575 * 9 8 3 27 27 H 1.08997 * 109.46546 * 306.30441 * 1 2 3 28 28 H 1.08997 * 109.47102 * 66.30469 * 1 2 3 29 29 H 1.09004 * 109.46802 * 186.30895 * 1 2 3 30 30 H 1.08998 * 113.61630 * 25.43094 * 8 3 2 31 31 H 1.09003 * 113.61516 * 156.33367 * 8 3 2 32 32 H 1.08996 * 109.47408 * 207.46222 * 11 9 8 33 33 H 1.09005 * 109.47358 * 327.46343 * 11 9 8 34 34 H 1.09000 * 109.47013 * 314.99758 * 18 17 16 35 35 H 0.96705 * 113.99524 * 60.00048 * 19 18 17 36 36 H 1.48501 * 109.99926 * 179.97438 * 20 18 17 37 37 H 1.48507 * 109.99426 * 301.31448 * 20 18 17 38 38 H 1.08001 * 119.95571 * 179.97438 * 21 17 16 39 39 H 1.07998 * 119.96016 * 180.02562 * 22 21 17 40 40 H 1.07998 * 120.03796 * 180.25489 * 25 23 22 41 41 H 1.08993 * 113.61586 * 270.88515 * 26 9 8 42 42 H 1.09005 * 113.69002 * 139.98973 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7726 2.0616 -1.3087 5 9 0.4056 2.3201 -1.4562 6 9 2.4756 3.2708 -1.2829 7 9 2.2191 1.2854 -2.3835 8 6 3.4746 1.3278 0.4693 9 6 2.9320 1.5113 1.8965 10 1 3.5082 2.2167 2.4953 11 6 2.6631 0.1936 2.6261 12 16 4.1776 -0.3562 3.4596 13 8 5.1596 -0.7401 2.5070 14 8 4.5005 0.5164 4.5336 15 8 3.7846 -1.6593 4.1406 16 6 3.6627 -2.7124 3.2903 17 6 4.7605 -3.5157 3.0179 18 6 6.0894 -3.2202 3.6641 19 8 6.0532 -3.6243 5.0343 20 14 7.4336 -4.1559 2.7760 21 6 4.6353 -4.5866 2.1536 22 6 3.4176 -4.8585 1.5593 23 6 2.3193 -4.0586 1.8290 24 9 1.1297 -4.3263 1.2476 25 6 2.4392 -2.9890 2.6983 26 6 1.6774 2.1280 1.2560 27 1 -0.3632 0.6085 0.8282 28 1 -0.3633 0.4130 -0.9410 29 1 -0.3633 -1.0215 0.1129 30 1 3.9959 0.3826 0.3185 31 1 4.0376 2.1861 0.1025 32 1 1.8751 0.3414 3.3646 33 1 2.3494 -0.5627 1.9065 34 1 6.2919 -2.1508 3.6060 35 1 5.8771 -4.5666 5.1619 36 1 8.7494 -3.8725 3.4034 37 1 7.1524 -5.6134 2.8208 38 1 5.4904 -5.2113 1.9416 39 1 3.3219 -5.6962 0.8845 40 1 1.5823 -2.3675 2.9122 41 1 1.7491 3.2050 1.1042 42 1 0.7471 1.8297 1.7394 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10564896_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:06 Heat of formation + Delta-G solvation = -294.419515 kcal Electronic energy + Delta-G solvation = -39271.400865 eV Core-core repulsion = 33427.157125 eV Total energy + Delta-G solvation = -5844.243740 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.073 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -51.22167 -50.20687 -48.77686 -48.64884 -42.56929 -41.66601 -39.51016 -38.37066 -37.81208 -37.51740 -37.23640 -32.92163 -31.99388 -31.76962 -28.65393 -27.92698 -27.02115 -26.93758 -25.21117 -23.77028 -23.37754 -21.98773 -20.90677 -20.09569 -19.78733 -19.51392 -19.37167 -18.97906 -18.96709 -18.36865 -17.75134 -17.59587 -17.38228 -16.90535 -16.82067 -16.69417 -16.28684 -16.11460 -15.96336 -15.71326 -15.63028 -15.56496 -15.43996 -15.26054 -15.11484 -14.95316 -14.86805 -14.83922 -14.75534 -14.45757 -14.18309 -13.95193 -13.53382 -13.51258 -13.44764 -13.31297 -13.26920 -13.17994 -13.14399 -12.87393 -12.59983 -12.43672 -12.35726 -12.19701 -11.80588 -11.60766 -10.96316 -10.73252 -10.51687 -10.06302 -5.00030 -1.27998 -0.40375 -0.34316 0.81850 1.15911 1.44969 1.47769 1.87494 1.88544 1.92517 2.33020 2.44190 2.53736 2.68454 2.70868 2.79807 2.93634 3.04029 3.20222 3.23451 3.25404 3.37919 3.40557 3.46145 3.54187 3.68782 3.81391 3.93557 3.99313 4.12273 4.18406 4.20601 4.29574 4.32112 4.39250 4.46122 4.51556 4.53393 4.58507 4.62530 4.65320 4.66598 4.81748 5.34939 5.50736 6.32618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.333 6.333 3 C 0.042 3.958 4 C 0.439 3.561 5 F -0.181 7.181 6 F -0.174 7.174 7 F -0.172 7.172 8 C -0.124 4.124 9 C -0.091 4.091 10 H 0.111 0.889 11 C -0.646 4.646 12 S 2.589 3.411 13 O -0.938 6.938 14 O -0.916 6.916 15 O -0.652 6.652 16 C 0.119 3.881 17 C -0.095 4.095 18 C -0.097 4.097 19 O -0.520 6.520 20 Si 0.706 3.294 21 C -0.077 4.077 22 C -0.126 4.126 23 C 0.130 3.870 24 F -0.123 7.123 25 C -0.167 4.167 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.376 0.624 36 H -0.249 1.249 37 H -0.253 1.253 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.115 0.885 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 -2.346 -2.506 4.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.250 6.250 3 C -0.001 4.001 4 C 0.384 3.616 5 F -0.163 7.163 6 F -0.156 7.156 7 F -0.154 7.154 8 C -0.161 4.161 9 C -0.111 4.111 10 H 0.129 0.871 11 C -0.772 4.772 12 S 2.684 3.316 13 O -0.937 6.937 14 O -0.914 6.914 15 O -0.610 6.610 16 C 0.077 3.923 17 C -0.098 4.098 18 C -0.206 4.206 19 O -0.326 6.326 20 Si 0.605 3.395 21 C -0.095 4.095 22 C -0.146 4.146 23 C 0.110 3.890 24 F -0.102 7.102 25 C -0.188 4.188 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.223 0.777 36 H -0.173 1.173 37 H -0.178 1.178 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.134 0.866 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.964 -2.476 -1.924 3.280 hybrid contribution -2.043 0.101 0.366 2.078 sum -3.007 -2.375 -1.559 4.136 Atomic orbital electron populations 1.23245 0.79365 1.04346 1.02112 1.88044 1.21273 1.21879 1.93848 1.23905 0.99862 0.86583 0.89733 1.21141 0.74145 0.78433 0.87866 1.93178 1.32268 1.94353 1.96473 1.93190 1.78819 1.46891 1.96682 1.93227 1.88971 1.74533 1.58636 1.23451 0.91878 1.06918 0.93813 1.21696 0.99234 0.94221 0.95930 0.87091 1.30882 1.23909 1.08096 1.14304 1.05791 0.76791 0.74174 0.74867 1.93635 1.55983 1.79039 1.65024 1.93687 1.81843 1.63671 1.52172 1.85763 1.90168 1.33021 1.52059 1.17374 0.93636 0.89310 0.92014 1.20539 0.95988 0.95318 0.97995 1.25389 0.99254 1.08866 0.87047 1.86713 1.93506 1.30155 1.22197 0.94494 0.77345 0.78212 0.89427 1.21031 0.98165 0.95753 0.94505 1.21396 0.91422 1.00462 1.01277 1.17218 0.81965 0.95240 0.94537 1.91589 1.43411 1.93101 1.82076 1.21237 0.97735 1.00452 0.99335 1.23623 0.99464 1.01118 0.93575 0.92549 0.92181 0.88004 0.87050 0.85741 0.83552 0.82952 0.85365 0.77683 1.17315 1.17776 0.82766 0.82755 0.82749 0.86635 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.28 101.05 1.04 1.03 16 2 O -0.33 0.35 8.52 -35.23 -0.30 0.05 16 3 C 0.04 -0.05 0.79 -89.81 -0.07 -0.13 16 4 C 0.44 0.16 2.66 37.16 0.10 0.26 16 5 F -0.18 -0.14 14.94 2.25 0.03 -0.10 16 6 F -0.17 -0.07 15.72 2.25 0.04 -0.03 16 7 F -0.17 -0.35 17.26 2.25 0.04 -0.31 16 8 C -0.12 0.25 6.92 -25.92 -0.18 0.07 16 9 C -0.09 0.24 3.84 -89.81 -0.34 -0.11 16 10 H 0.11 -0.41 8.13 -51.93 -0.42 -0.83 16 11 C -0.65 1.66 5.06 37.16 0.19 1.84 16 12 S 2.59 2.62 4.92 -107.50 -0.53 2.09 16 13 O -0.94 -1.56 14.24 -67.03 -0.95 -2.51 16 14 O -0.92 -4.24 18.09 -67.04 -1.21 -5.46 16 15 O -0.65 -1.02 9.47 -51.75 -0.49 -1.51 16 16 C 0.12 0.05 4.78 -39.23 -0.19 -0.13 16 17 C -0.10 -0.01 4.68 -104.46 -0.49 -0.50 16 18 C -0.10 -0.11 2.23 36.00 0.08 -0.03 16 19 O -0.52 -1.04 12.88 -35.23 -0.45 -1.50 16 20 Si 0.71 -0.75 30.25 -169.99 -5.14 -5.89 16 21 C -0.08 0.18 8.65 -39.62 -0.34 -0.17 16 22 C -0.13 0.34 10.02 -39.49 -0.40 -0.06 16 23 C 0.13 -0.19 7.30 -39.44 -0.29 -0.47 16 24 F -0.12 0.08 17.27 2.25 0.04 0.12 16 25 C -0.17 0.23 8.44 -39.37 -0.33 -0.10 16 26 C -0.14 0.43 6.62 -25.92 -0.17 0.26 16 27 H 0.06 -0.22 6.39 -51.93 -0.33 -0.55 16 28 H 0.06 -0.10 6.32 -51.93 -0.33 -0.43 16 29 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 30 H 0.11 -0.22 8.10 -51.93 -0.42 -0.64 16 31 H 0.12 -0.41 7.30 -51.93 -0.38 -0.79 16 32 H 0.15 -0.72 8.14 -51.93 -0.42 -1.14 16 33 H 0.15 -0.49 4.61 -51.92 -0.24 -0.73 16 34 H 0.13 0.30 5.42 -51.93 -0.28 0.01 16 35 H 0.38 -0.74 8.70 45.56 0.40 -0.34 16 36 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 37 H -0.25 0.30 6.68 56.52 0.38 0.68 16 38 H 0.16 -0.66 4.86 -52.49 -0.25 -0.92 16 39 H 0.15 -0.77 8.06 -52.49 -0.42 -1.19 16 40 H 0.15 -0.58 7.52 -52.49 -0.39 -0.97 16 41 H 0.12 -0.45 7.69 -51.93 -0.40 -0.85 16 42 H 0.10 -0.41 6.48 -51.93 -0.34 -0.75 16 LS Contribution 365.49 15.07 5.51 5.51 Total: 0.00 -9.45 365.49 -8.70 -18.16 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: -3.88 Total: -10.37 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.40 Total: 1.76 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -3.41 Total: -10.92 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.15 Total: -0.33 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: -5.14 Total: -5.89 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -0.53 Total: 2.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -9.45 -8.70 -18.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -276.263 kcal (2) G-P(sol) polarization free energy of solvation -9.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds