Wall clock time and date at job start Mon Mar 8 2021 08:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53001 * 112.84798 * 291.84935 * 3 2 1 5 5 F 1.39903 * 109.47091 * 65.66002 * 4 3 2 6 6 F 1.39896 * 109.47104 * 185.65427 * 4 3 2 7 7 F 1.39897 * 109.47289 * 305.65700 * 4 3 2 8 8 C 1.53779 * 113.61564 * 160.54441 * 3 2 1 9 9 C 1.53785 * 87.07829 * 270.88277 * 8 3 2 10 10 H 1.09001 * 113.61270 * 220.01522 * 9 8 3 11 11 C 1.52996 * 113.69080 * 89.12889 * 9 8 3 12 12 S 1.81406 * 109.47307 * 87.46109 * 11 9 8 13 13 O 1.42103 * 110.54007 * 291.62630 * 12 11 9 14 14 O 1.42103 * 110.54091 * 68.37559 * 12 11 9 15 15 O 1.52200 * 104.45120 * 179.97438 * 12 11 9 16 16 C 1.35899 * 113.99761 * 74.99709 * 15 12 11 17 17 C 1.38733 * 120.03783 * 90.00197 * 16 15 12 18 18 C 1.50697 * 120.00297 * 359.95622 * 17 16 15 19 19 O 1.42902 * 109.47475 * 74.99769 * 18 17 16 20 20 Si 1.86306 * 109.46994 * 195.00133 * 18 17 16 21 21 C 1.38177 * 119.99147 * 179.97438 * 17 16 15 22 22 C 1.38203 * 120.08227 * 0.02562 * 21 17 16 23 23 C 1.38519 * 120.08453 * 359.97438 * 22 21 17 24 24 F 1.35098 * 119.99606 * 180.02562 * 23 22 21 25 25 C 1.38344 * 120.00399 * 359.74456 * 23 22 21 26 26 C 1.53777 * 87.08215 * 334.56575 * 9 8 3 27 27 H 1.08997 * 109.46546 * 306.30441 * 1 2 3 28 28 H 1.08997 * 109.47102 * 66.30469 * 1 2 3 29 29 H 1.09004 * 109.46802 * 186.30895 * 1 2 3 30 30 H 1.08998 * 113.61630 * 25.43094 * 8 3 2 31 31 H 1.09003 * 113.61516 * 156.33367 * 8 3 2 32 32 H 1.08996 * 109.47408 * 207.46222 * 11 9 8 33 33 H 1.09005 * 109.47358 * 327.46343 * 11 9 8 34 34 H 1.09000 * 109.47013 * 314.99758 * 18 17 16 35 35 H 0.96705 * 113.99524 * 60.00048 * 19 18 17 36 36 H 1.48501 * 109.99926 * 179.97438 * 20 18 17 37 37 H 1.48507 * 109.99426 * 301.31448 * 20 18 17 38 38 H 1.08001 * 119.95571 * 179.97438 * 21 17 16 39 39 H 1.07998 * 119.96016 * 180.02562 * 22 21 17 40 40 H 1.07998 * 120.03796 * 180.25489 * 25 23 22 41 41 H 1.08993 * 113.61586 * 270.88515 * 26 9 8 42 42 H 1.09005 * 113.69002 * 139.98973 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7726 2.0616 -1.3087 5 9 0.4056 2.3201 -1.4562 6 9 2.4756 3.2708 -1.2829 7 9 2.2191 1.2854 -2.3835 8 6 3.4746 1.3278 0.4693 9 6 2.9320 1.5113 1.8965 10 1 3.5082 2.2167 2.4953 11 6 2.6631 0.1936 2.6261 12 16 4.1776 -0.3562 3.4596 13 8 5.1596 -0.7401 2.5070 14 8 4.5005 0.5164 4.5336 15 8 3.7846 -1.6593 4.1406 16 6 3.6627 -2.7124 3.2903 17 6 4.7605 -3.5157 3.0179 18 6 6.0894 -3.2202 3.6641 19 8 6.0532 -3.6243 5.0343 20 14 7.4336 -4.1559 2.7760 21 6 4.6353 -4.5866 2.1536 22 6 3.4176 -4.8585 1.5593 23 6 2.3193 -4.0586 1.8290 24 9 1.1297 -4.3263 1.2476 25 6 2.4392 -2.9890 2.6983 26 6 1.6774 2.1280 1.2560 27 1 -0.3632 0.6085 0.8282 28 1 -0.3633 0.4130 -0.9410 29 1 -0.3633 -1.0215 0.1129 30 1 3.9959 0.3826 0.3185 31 1 4.0376 2.1861 0.1025 32 1 1.8751 0.3414 3.3646 33 1 2.3494 -0.5627 1.9065 34 1 6.2919 -2.1508 3.6060 35 1 5.8771 -4.5666 5.1619 36 1 8.7494 -3.8725 3.4034 37 1 7.1524 -5.6134 2.8208 38 1 5.4904 -5.2113 1.9416 39 1 3.3219 -5.6962 0.8845 40 1 1.5823 -2.3675 2.9122 41 1 1.7491 3.2050 1.1042 42 1 0.7471 1.8297 1.7394 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10564896_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:13:05 Heat of formation + Delta-G solvation = -295.320975 kcal Electronic energy + Delta-G solvation = -39271.439955 eV Core-core repulsion = 33427.157125 eV Total energy + Delta-G solvation = -5844.282830 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.073 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.24402 -50.08091 -48.78800 -48.70997 -42.51779 -41.48108 -39.43889 -38.48075 -37.83819 -37.41055 -37.26070 -32.80921 -31.86424 -31.63009 -28.44068 -27.82706 -26.92622 -26.76777 -25.08809 -23.66080 -23.29551 -21.93139 -20.76867 -20.04833 -19.75213 -19.53386 -19.33656 -18.97961 -18.91274 -18.35116 -17.67442 -17.48027 -17.23540 -16.84842 -16.71337 -16.50861 -16.23933 -16.08510 -15.88258 -15.66272 -15.58092 -15.48646 -15.38790 -15.22515 -15.09695 -14.91782 -14.86480 -14.77608 -14.68293 -14.33713 -14.22049 -13.95673 -13.54490 -13.46549 -13.36446 -13.28758 -13.20272 -13.07916 -12.95984 -12.74696 -12.39148 -12.36133 -12.19203 -12.07955 -11.77483 -11.44325 -10.81036 -10.72845 -10.36013 -9.94889 -4.92671 -1.25333 -0.27428 -0.21222 0.84328 1.19369 1.49865 1.53295 1.92098 2.06947 2.07237 2.35824 2.55250 2.61219 2.73341 2.84422 2.92979 3.11872 3.19778 3.30338 3.30931 3.36178 3.49841 3.50889 3.59264 3.76722 3.87558 3.99252 4.20062 4.26077 4.33976 4.36762 4.42333 4.47221 4.53974 4.60778 4.63908 4.66695 4.75695 4.77693 4.84243 4.84910 4.88348 4.95912 5.52159 5.70655 6.44481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.342 6.342 3 C 0.039 3.961 4 C 0.433 3.567 5 F -0.185 7.185 6 F -0.177 7.177 7 F -0.186 7.186 8 C -0.132 4.132 9 C -0.098 4.098 10 H 0.120 0.880 11 C -0.625 4.625 12 S 2.583 3.417 13 O -0.954 6.954 14 O -0.964 6.964 15 O -0.664 6.664 16 C 0.094 3.906 17 C -0.109 4.109 18 C -0.121 4.121 19 O -0.545 6.545 20 Si 0.780 3.220 21 C -0.073 4.073 22 C -0.116 4.116 23 C 0.121 3.879 24 F -0.128 7.128 25 C -0.165 4.165 26 C -0.132 4.132 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.107 0.893 35 H 0.390 0.610 36 H -0.300 1.300 37 H -0.237 1.237 38 H 0.177 0.823 39 H 0.182 0.818 40 H 0.175 0.825 41 H 0.125 0.875 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -3.354 -3.300 6.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.259 6.259 3 C -0.003 4.003 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.158 7.158 7 F -0.168 7.168 8 C -0.169 4.169 9 C -0.117 4.117 10 H 0.138 0.862 11 C -0.755 4.755 12 S 2.683 3.317 13 O -0.953 6.953 14 O -0.963 6.963 15 O -0.622 6.622 16 C 0.052 3.948 17 C -0.112 4.112 18 C -0.227 4.227 19 O -0.354 6.354 20 Si 0.681 3.319 21 C -0.090 4.090 22 C -0.135 4.135 23 C 0.102 3.898 24 F -0.106 7.106 25 C -0.185 4.185 26 C -0.170 4.170 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.193 0.807 33 H 0.181 0.819 34 H 0.125 0.875 35 H 0.240 0.760 36 H -0.228 1.228 37 H -0.161 1.161 38 H 0.194 0.806 39 H 0.199 0.801 40 H 0.192 0.808 41 H 0.144 0.856 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.325 -3.502 -2.701 4.997 hybrid contribution -1.661 0.439 0.583 1.814 sum -3.986 -3.063 -2.118 5.455 Atomic orbital electron populations 1.23401 0.78663 1.05469 1.02227 1.88035 1.22110 1.22004 1.93799 1.24027 1.00332 0.86753 0.89232 1.21521 0.73876 0.78451 0.88267 1.93167 1.32539 1.94395 1.96530 1.93180 1.78851 1.47067 1.96699 1.93194 1.89131 1.74901 1.59537 1.23586 0.91811 1.07188 0.94306 1.21801 0.99900 0.94313 0.95736 0.86161 1.30717 1.21675 1.08412 1.14659 1.05750 0.77971 0.73665 0.74296 1.93598 1.57766 1.79076 1.64836 1.93621 1.83465 1.64950 1.54232 1.85725 1.90292 1.33499 1.52729 1.17667 0.94654 0.89533 0.92961 1.20629 0.95372 0.96380 0.98831 1.25735 1.01481 1.08406 0.87112 1.86657 1.93816 1.31654 1.23265 0.93670 0.72782 0.77473 0.88023 1.21236 0.99162 0.95077 0.93572 1.21719 0.90588 1.00526 1.00677 1.17371 0.82182 0.95570 0.94721 1.91581 1.43732 1.93138 1.82159 1.21410 0.97657 1.00727 0.98747 1.23686 0.99730 1.01464 0.92122 0.90899 0.93303 0.86772 0.87493 0.84888 0.80714 0.81876 0.87538 0.76044 1.22796 1.16142 0.80584 0.80064 0.80780 0.85641 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.28 113.37 1.17 1.18 16 2 O -0.34 1.01 8.52 -148.98 -1.27 -0.26 16 3 C 0.04 -0.12 0.79 -10.27 -0.01 -0.13 16 4 C 0.43 0.32 2.66 71.98 0.19 0.51 16 5 F -0.18 -0.26 14.94 44.97 0.67 0.41 16 6 F -0.18 -0.15 15.72 44.97 0.71 0.56 16 7 F -0.19 -0.86 17.26 44.97 0.78 -0.08 16 8 C -0.13 0.54 6.92 31.12 0.22 0.75 16 9 C -0.10 0.57 3.84 -10.27 -0.04 0.53 16 10 H 0.12 -0.90 8.13 -2.39 -0.02 -0.92 16 11 C -0.63 3.57 5.06 71.98 0.36 3.93 16 12 S 2.58 9.06 4.92 -56.49 -0.28 8.78 16 13 O -0.95 -5.06 14.24 -118.57 -1.69 -6.75 16 14 O -0.96 -11.26 18.09 -118.57 -2.15 -13.41 16 15 O -0.66 -3.07 9.47 -61.51 -0.58 -3.65 16 16 C 0.09 0.14 4.78 22.50 0.11 0.24 16 17 C -0.11 -0.06 4.68 -19.76 -0.09 -0.15 16 18 C -0.12 -0.45 2.23 71.24 0.16 -0.29 16 19 O -0.55 -3.19 12.88 -148.98 -1.92 -5.11 16 20 Si 0.78 -1.46 30.25 68.60 2.07 0.62 16 21 C -0.07 0.42 8.65 22.25 0.19 0.61 16 22 C -0.12 0.83 10.02 22.33 0.22 1.05 16 23 C 0.12 -0.50 7.30 22.36 0.16 -0.33 16 24 F -0.13 0.34 17.27 44.97 0.78 1.12 16 25 C -0.16 0.55 8.44 22.41 0.19 0.74 16 26 C -0.13 0.99 6.62 31.12 0.21 1.20 16 27 H 0.07 -0.71 6.39 -2.39 -0.02 -0.73 16 28 H 0.05 -0.19 6.32 -2.39 -0.02 -0.20 16 29 H 0.11 -1.03 8.14 -2.38 -0.02 -1.05 16 30 H 0.11 -0.35 8.10 -2.39 -0.02 -0.37 16 31 H 0.13 -0.84 7.30 -2.39 -0.02 -0.86 16 32 H 0.18 -2.01 8.14 -2.39 -0.02 -2.03 16 33 H 0.16 -1.21 4.61 -2.39 -0.01 -1.22 16 34 H 0.11 0.81 5.42 -2.39 -0.01 0.79 16 35 H 0.39 -1.08 8.70 -74.05 -0.64 -1.72 16 36 H -0.30 -1.93 7.11 99.48 0.71 -1.23 16 37 H -0.24 1.05 6.68 99.48 0.66 1.71 16 38 H 0.18 -1.90 4.86 -2.91 -0.01 -1.92 16 39 H 0.18 -2.33 8.06 -2.91 -0.02 -2.35 16 40 H 0.17 -1.51 7.52 -2.91 -0.02 -1.53 16 41 H 0.13 -1.16 7.69 -2.39 -0.02 -1.18 16 42 H 0.11 -1.24 6.48 -2.38 -0.02 -1.25 16 Total: 0.00 -24.62 365.49 0.65 -23.97 By element: Atomic # 1 Polarization: -16.53 SS G_CDS: 0.49 Total: -16.05 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 3.04 Total: 9.84 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -7.60 Total: -29.17 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 2.93 Total: 2.00 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.07 Total: 0.62 kcal Atomic # 16 Polarization: 9.06 SS G_CDS: -0.28 Total: 8.78 kcal Total: -24.62 0.65 -23.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10564896_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.346 kcal (2) G-P(sol) polarization free energy of solvation -24.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -295.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds