Wall clock time and date at job start Mon Mar 8 2021 08:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38237 * 119.99733 * 119.72601 * 4 2 1 6 6 C 1.38236 * 119.99856 * 179.78947 * 5 4 2 7 7 C 1.38241 * 119.99846 * 0.44187 * 6 5 4 8 8 S 1.76200 * 119.99999 * 179.83439 * 7 6 5 9 9 O 1.42101 * 106.40320 * 23.51753 * 8 7 6 10 10 O 1.42105 * 106.40144 * 156.43717 * 8 7 6 11 11 N 1.65598 * 107.21876 * 269.97532 * 8 7 6 12 12 C 1.46497 * 119.99798 * 65.00323 * 11 8 7 13 13 H 1.09001 * 112.85015 * 13.80140 * 12 11 8 14 14 C 1.53781 * 113.61629 * 144.99743 * 12 11 8 15 15 C 1.53786 * 87.08009 * 89.11453 * 14 12 11 16 16 H 1.08998 * 113.61698 * 270.88257 * 15 14 12 17 17 C 1.50699 * 113.61504 * 139.98125 * 15 14 12 18 18 C 1.38331 * 120.00995 * 119.99979 * 17 15 14 19 19 Cl 1.73608 * 120.00884 * 359.95650 * 18 17 15 20 20 C 1.38365 * 119.97599 * 179.97438 * 18 17 15 21 21 C 1.38195 * 119.98826 * 359.97438 * 20 18 17 22 22 C 1.38263 * 120.01323 * 0.02562 * 21 20 18 23 23 C 1.38217 * 120.02080 * 359.74742 * 22 21 20 24 24 C 1.53779 * 87.08062 * 25.43575 * 15 14 12 25 25 C 1.38236 * 120.00186 * 359.81050 * 7 6 5 26 26 C 1.38234 * 120.00222 * 300.00238 * 4 2 1 27 27 H 0.96698 * 113.99898 * 59.99565 * 1 2 3 28 28 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 29 29 H 1.48504 * 110.00019 * 298.68426 * 3 2 1 30 30 H 1.48503 * 110.00152 * 60.00114 * 3 2 1 31 31 H 1.07997 * 120.00523 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.00704 * 180.27496 * 6 5 4 33 33 H 0.96995 * 120.00242 * 244.99538 * 11 8 7 34 34 H 1.09001 * 113.61490 * 203.65951 * 14 12 11 35 35 H 1.08993 * 113.61727 * 334.57046 * 14 12 11 36 36 H 1.08004 * 120.00593 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.99243 * 179.97438 * 21 20 18 38 38 H 1.07997 * 119.98416 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.98798 * 180.27937 * 23 22 21 40 40 H 1.09003 * 113.61555 * 220.01851 * 24 15 14 41 41 H 1.09001 * 113.61917 * 89.11310 * 24 15 14 42 42 H 1.07996 * 120.00382 * 180.02562 * 25 7 6 43 43 H 1.07998 * 119.99657 * 359.97387 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7213 -0.0369 -2.1432 6 6 3.1857 -0.6898 -3.2698 7 6 2.8524 -2.0136 -3.4881 8 16 3.4407 -2.8445 -4.9262 9 8 4.6077 -2.1487 -5.3425 10 8 3.4309 -4.2321 -4.6200 11 7 2.3126 -2.6206 -6.1176 12 6 2.0544 -1.2759 -6.6385 13 1 2.8173 -0.5547 -6.3452 14 6 1.7269 -1.2495 -8.1407 15 6 0.2533 -1.4361 -7.7426 16 1 -0.0470 -2.4804 -7.6570 17 6 -0.7038 -0.6164 -8.5691 18 6 -1.6874 -1.2431 -9.3130 19 17 -1.8188 -2.9741 -9.2957 20 6 -2.5661 -0.4898 -10.0712 21 6 -2.4611 0.8881 -10.0845 22 6 -1.4779 1.5140 -9.3407 23 6 -0.6028 0.7622 -8.5795 24 6 0.6165 -0.7872 -6.3966 25 6 2.0581 -2.6855 -2.5779 26 6 1.5973 -2.0338 -1.4493 27 1 -0.3933 0.4418 -0.7650 28 1 1.7923 -0.5139 0.8900 29 1 1.5879 2.4586 -1.2242 30 1 1.5616 2.4679 1.2085 31 1 2.9790 0.9982 -1.9744 32 1 3.8066 -0.1650 -3.9807 33 1 1.8229 -3.3797 -6.4707 34 1 1.9327 -0.2902 -8.6157 35 1 2.1402 -2.0936 -8.6927 36 1 -3.3340 -0.9785 -10.6525 37 1 -3.1467 1.4762 -10.6766 38 1 -1.3959 2.5908 -9.3517 39 1 0.1622 1.2519 -7.9951 40 1 0.1336 -1.2580 -5.5403 41 1 0.5189 0.2985 -6.3947 42 1 1.7981 -3.7198 -2.7483 43 1 0.9767 -2.5588 -0.7382 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10565096_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:17 Heat of formation + Delta-G solvation = -26.146524 kcal Electronic energy + Delta-G solvation = -29946.271340 eV Core-core repulsion = 25690.710811 eV Total energy + Delta-G solvation = -4255.560529 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.44398 -40.78556 -39.45240 -38.25186 -37.92871 -37.44534 -36.88792 -34.47466 -33.11388 -32.28766 -31.79184 -31.60826 -27.34910 -26.87525 -26.29625 -24.19510 -23.85849 -23.08341 -22.84131 -20.96640 -20.35123 -19.38727 -18.83303 -18.33013 -18.13994 -17.37140 -16.97691 -16.73728 -16.52904 -16.48845 -16.28409 -15.91270 -15.58862 -15.44916 -15.11085 -14.93413 -14.90044 -14.65644 -14.55763 -14.09687 -13.98114 -13.81753 -13.59163 -13.51476 -13.13349 -13.06802 -12.89133 -12.74066 -12.71907 -12.57779 -12.56254 -12.21270 -12.08090 -11.90256 -11.80295 -11.58025 -11.40316 -10.89578 -10.66591 -10.45429 -10.22369 -9.95165 -9.67610 -5.10820 -0.76425 -0.41414 0.08034 0.10598 0.17050 1.08167 1.13033 1.43419 1.79461 1.81991 2.26012 2.50996 2.70069 3.13479 3.17808 3.26817 3.36165 3.42470 3.44602 3.65127 3.69456 3.70518 3.78016 3.92425 3.96522 3.99735 4.07053 4.20590 4.26264 4.27274 4.30192 4.50234 4.52559 4.54091 4.59695 4.72364 4.74530 4.80106 4.84586 4.86104 4.86842 4.90197 5.15252 5.16032 5.20071 5.34586 5.38885 5.60645 5.71430 5.79188 6.18658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.085 4.085 3 Si 0.687 3.313 4 C -0.061 4.061 5 C -0.138 4.138 6 C -0.015 4.015 7 C -0.673 4.673 8 S 2.695 3.305 9 O -0.950 6.950 10 O -0.953 6.953 11 N -1.097 6.097 12 C 0.124 3.876 13 H 0.110 0.890 14 C -0.130 4.130 15 C -0.081 4.081 16 H 0.107 0.893 17 C -0.062 4.062 18 C -0.033 4.033 19 Cl -0.067 7.067 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.147 4.147 25 C -0.016 4.016 26 C -0.114 4.114 27 H 0.377 0.623 28 H 0.125 0.875 29 H -0.257 1.257 30 H -0.253 1.253 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.421 0.579 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.143 0.857 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 4.890 -0.799 5.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.194 4.194 3 Si 0.588 3.412 4 C -0.062 4.062 5 C -0.156 4.156 6 C -0.034 4.034 7 C -0.760 4.760 8 S 2.784 3.216 9 O -0.940 6.940 10 O -0.943 6.943 11 N -0.856 5.856 12 C 0.016 3.984 13 H 0.128 0.872 14 C -0.169 4.169 15 C -0.100 4.100 16 H 0.125 0.875 17 C -0.062 4.062 18 C -0.060 4.060 19 Cl -0.038 7.038 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.186 4.186 25 C -0.035 4.035 26 C -0.132 4.132 27 H 0.225 0.775 28 H 0.143 0.857 29 H -0.182 1.182 30 H -0.178 1.178 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.256 0.744 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.161 0.839 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.543 4.939 -0.234 4.975 hybrid contribution -1.988 -0.291 -0.278 2.029 sum -2.531 4.648 -0.512 5.318 Atomic orbital electron populations 1.86635 1.17183 1.79978 1.49339 1.25207 0.84366 1.11507 0.98352 0.94864 0.91667 0.74000 0.80703 1.20685 0.95034 0.94873 0.95577 1.21153 0.99341 1.00230 0.94903 1.20895 0.94040 0.91861 0.96579 1.30984 1.15406 1.07339 1.22231 1.01941 0.73250 0.73433 0.72927 1.93618 1.44117 1.75336 1.80914 1.93628 1.86156 1.30317 1.84231 1.55365 1.61053 1.14692 1.54461 1.21671 0.97555 0.83073 0.96092 0.87227 1.23393 0.94096 1.04068 0.95391 1.21703 0.93509 0.99856 0.94907 0.87456 1.19558 0.95479 0.93904 0.97304 1.20875 0.98851 0.84831 1.01444 1.98378 1.97498 1.10382 1.97529 1.21114 0.98751 0.94047 0.98761 1.21176 0.98658 0.93794 0.99325 1.21288 0.94956 1.00490 0.96252 1.20996 0.99709 0.92336 0.99477 1.23636 0.96023 1.01626 0.97359 1.20996 0.91091 0.99495 0.91946 1.21185 1.00070 0.94064 0.97924 0.77522 0.85719 1.18162 1.17799 0.84548 0.83747 0.74386 0.88213 0.89834 0.84871 0.85011 0.85248 0.84953 0.90193 0.88398 0.83927 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.09 12.77 -35.23 -0.45 -0.36 16 2 C -0.08 0.13 2.82 36.01 0.10 0.23 16 3 Si 0.69 -1.52 29.79 -169.99 -5.06 -6.59 16 4 C -0.06 0.07 5.39 -104.62 -0.56 -0.50 16 5 C -0.14 0.23 8.67 -39.58 -0.34 -0.11 16 6 C -0.01 0.02 9.52 -39.58 -0.38 -0.36 16 7 C -0.67 0.17 5.95 -39.58 -0.24 -0.07 16 8 S 2.70 1.67 5.71 -107.50 -0.61 1.06 16 9 O -0.95 -3.06 16.80 -57.17 -0.96 -4.02 16 10 O -0.95 -3.50 17.28 -57.17 -0.99 -4.49 16 11 N -1.10 2.21 5.73 -4.20 -0.02 2.19 16 12 C 0.12 -0.35 4.51 -67.12 -0.30 -0.65 16 13 H 0.11 -0.41 7.77 -51.93 -0.40 -0.81 16 14 C -0.13 0.34 7.33 -25.92 -0.19 0.15 16 15 C -0.08 0.16 3.58 -90.96 -0.33 -0.17 16 16 H 0.11 -0.17 6.54 -51.93 -0.34 -0.51 16 17 C -0.06 0.04 5.29 -104.59 -0.55 -0.51 16 18 C -0.03 -0.01 6.31 -39.50 -0.25 -0.26 16 19 Cl -0.07 -0.05 27.16 -51.86 -1.41 -1.46 16 20 C -0.11 0.02 9.83 -39.55 -0.39 -0.37 16 21 C -0.11 0.13 10.05 -39.59 -0.40 -0.27 16 22 C -0.11 0.18 10.05 -39.58 -0.40 -0.22 16 23 C -0.11 0.18 8.62 -39.59 -0.34 -0.16 16 24 C -0.15 0.46 7.25 -25.92 -0.19 0.27 16 25 C -0.02 0.00 9.52 -39.58 -0.38 -0.37 16 26 C -0.11 0.06 9.61 -39.58 -0.38 -0.32 16 27 H 0.38 -1.15 8.70 45.56 0.40 -0.75 16 28 H 0.13 -0.27 7.96 -51.93 -0.41 -0.69 16 29 H -0.26 0.17 7.11 56.52 0.40 0.57 16 30 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 31 H 0.14 -0.51 4.88 -52.49 -0.26 -0.76 16 32 H 0.14 -0.40 7.62 -52.49 -0.40 -0.80 16 33 H 0.42 -1.36 8.78 -34.47 -0.30 -1.66 16 34 H 0.10 -0.33 7.73 -51.93 -0.40 -0.73 16 35 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 36 H 0.13 -0.16 8.06 -52.48 -0.42 -0.58 16 37 H 0.13 -0.38 8.06 -52.49 -0.42 -0.81 16 38 H 0.13 -0.44 8.06 -52.49 -0.42 -0.87 16 39 H 0.13 -0.50 6.64 -52.49 -0.35 -0.84 16 40 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 41 H 0.10 -0.41 6.30 -51.93 -0.33 -0.73 16 42 H 0.14 -0.17 7.62 -52.49 -0.40 -0.57 16 43 H 0.14 -0.17 8.06 -52.49 -0.42 -0.60 16 LS Contribution 382.82 15.07 5.77 5.77 Total: 0.00 -9.72 382.82 -14.18 -23.90 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: -4.93 Total: -12.31 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -5.51 Total: -3.69 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -0.02 Total: 2.19 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -2.40 Total: -8.87 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -5.06 Total: -6.59 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -0.61 Total: 1.06 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.41 Total: -1.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -9.72 -14.18 -23.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.244 kcal (2) G-P(sol) polarization free energy of solvation -9.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds