Wall clock time and date at job start Mon Mar 8 2021 08:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38237 * 119.99733 * 119.72601 * 4 2 1 6 6 C 1.38236 * 119.99856 * 179.78947 * 5 4 2 7 7 C 1.38241 * 119.99846 * 0.44187 * 6 5 4 8 8 S 1.76200 * 119.99999 * 179.83439 * 7 6 5 9 9 O 1.42101 * 106.40320 * 23.51753 * 8 7 6 10 10 O 1.42105 * 106.40144 * 156.43717 * 8 7 6 11 11 N 1.65598 * 107.21876 * 269.97532 * 8 7 6 12 12 C 1.46497 * 119.99798 * 65.00323 * 11 8 7 13 13 H 1.09001 * 112.85015 * 13.80140 * 12 11 8 14 14 C 1.53781 * 113.61629 * 144.99743 * 12 11 8 15 15 C 1.53786 * 87.08009 * 89.11453 * 14 12 11 16 16 H 1.08998 * 113.61698 * 270.88257 * 15 14 12 17 17 C 1.50699 * 113.61504 * 139.98125 * 15 14 12 18 18 C 1.38331 * 120.00995 * 119.99979 * 17 15 14 19 19 Cl 1.73608 * 120.00884 * 359.95650 * 18 17 15 20 20 C 1.38365 * 119.97599 * 179.97438 * 18 17 15 21 21 C 1.38195 * 119.98826 * 359.97438 * 20 18 17 22 22 C 1.38263 * 120.01323 * 0.02562 * 21 20 18 23 23 C 1.38217 * 120.02080 * 359.74742 * 22 21 20 24 24 C 1.53779 * 87.08062 * 25.43575 * 15 14 12 25 25 C 1.38236 * 120.00186 * 359.81050 * 7 6 5 26 26 C 1.38234 * 120.00222 * 300.00238 * 4 2 1 27 27 H 0.96698 * 113.99898 * 59.99565 * 1 2 3 28 28 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 29 29 H 1.48504 * 110.00019 * 298.68426 * 3 2 1 30 30 H 1.48503 * 110.00152 * 60.00114 * 3 2 1 31 31 H 1.07997 * 120.00523 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.00704 * 180.27496 * 6 5 4 33 33 H 0.96995 * 120.00242 * 244.99538 * 11 8 7 34 34 H 1.09001 * 113.61490 * 203.65951 * 14 12 11 35 35 H 1.08993 * 113.61727 * 334.57046 * 14 12 11 36 36 H 1.08004 * 120.00593 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.99243 * 179.97438 * 21 20 18 38 38 H 1.07997 * 119.98416 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.98798 * 180.27937 * 23 22 21 40 40 H 1.09003 * 113.61555 * 220.01851 * 24 15 14 41 41 H 1.09001 * 113.61917 * 89.11310 * 24 15 14 42 42 H 1.07996 * 120.00382 * 180.02562 * 25 7 6 43 43 H 1.07998 * 119.99657 * 359.97387 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7213 -0.0369 -2.1432 6 6 3.1857 -0.6898 -3.2698 7 6 2.8524 -2.0136 -3.4881 8 16 3.4407 -2.8445 -4.9262 9 8 4.6077 -2.1487 -5.3425 10 8 3.4309 -4.2321 -4.6200 11 7 2.3126 -2.6206 -6.1176 12 6 2.0544 -1.2759 -6.6385 13 1 2.8173 -0.5547 -6.3452 14 6 1.7269 -1.2495 -8.1407 15 6 0.2533 -1.4361 -7.7426 16 1 -0.0470 -2.4804 -7.6570 17 6 -0.7038 -0.6164 -8.5691 18 6 -1.6874 -1.2431 -9.3130 19 17 -1.8188 -2.9741 -9.2957 20 6 -2.5661 -0.4898 -10.0712 21 6 -2.4611 0.8881 -10.0845 22 6 -1.4779 1.5140 -9.3407 23 6 -0.6028 0.7622 -8.5795 24 6 0.6165 -0.7872 -6.3966 25 6 2.0581 -2.6855 -2.5779 26 6 1.5973 -2.0338 -1.4493 27 1 -0.3933 0.4418 -0.7650 28 1 1.7923 -0.5139 0.8900 29 1 1.5879 2.4586 -1.2242 30 1 1.5616 2.4679 1.2085 31 1 2.9790 0.9982 -1.9744 32 1 3.8066 -0.1650 -3.9807 33 1 1.8229 -3.3797 -6.4707 34 1 1.9327 -0.2902 -8.6157 35 1 2.1402 -2.0936 -8.6927 36 1 -3.3340 -0.9785 -10.6525 37 1 -3.1467 1.4762 -10.6766 38 1 -1.3959 2.5908 -9.3517 39 1 0.1622 1.2519 -7.9951 40 1 0.1336 -1.2580 -5.5403 41 1 0.5189 0.2985 -6.3947 42 1 1.7981 -3.7198 -2.7483 43 1 0.9767 -2.5588 -0.7382 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10565096_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:16 Heat of formation + Delta-G solvation = -25.345996 kcal Electronic energy + Delta-G solvation = -29946.236627 eV Core-core repulsion = 25690.710811 eV Total energy + Delta-G solvation = -4255.525816 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.27047 -40.68185 -39.30087 -38.39937 -37.84583 -37.41810 -37.04563 -34.34963 -33.03071 -32.18123 -31.66063 -31.46895 -27.25033 -26.64197 -26.12600 -24.08746 -23.72580 -22.99893 -22.69112 -20.91179 -20.20871 -19.31364 -18.79194 -18.27638 -18.06481 -17.29344 -16.84490 -16.65689 -16.41709 -16.34565 -16.19761 -15.82755 -15.56555 -15.29030 -14.98921 -14.80185 -14.77166 -14.52343 -14.50536 -13.99667 -13.85451 -13.77435 -13.52818 -13.33775 -13.30836 -13.23213 -12.79865 -12.67407 -12.59877 -12.52631 -12.50728 -12.09142 -11.97051 -11.81082 -11.70299 -11.48435 -11.20525 -10.79067 -10.51342 -10.35644 -10.12509 -9.82874 -9.57288 -4.93842 -0.76455 -0.36807 0.18952 0.20946 0.29878 1.17473 1.23530 1.56849 1.85844 1.94132 2.33350 2.64288 2.69749 3.19204 3.31474 3.45474 3.49090 3.60701 3.65221 3.76797 3.84537 3.88590 3.97215 4.10887 4.15171 4.19975 4.22101 4.35775 4.40099 4.41915 4.44111 4.62988 4.71797 4.73381 4.81984 4.85587 4.92657 4.96735 4.99924 5.00193 5.04858 5.09077 5.25945 5.31084 5.39152 5.49731 5.55329 5.71377 5.87911 5.96998 6.41150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.092 4.092 3 Si 0.766 3.234 4 C -0.061 4.061 5 C -0.137 4.137 6 C -0.018 4.018 7 C -0.675 4.675 8 S 2.712 3.288 9 O -0.977 6.977 10 O -0.990 6.990 11 N -1.091 6.091 12 C 0.120 3.880 13 H 0.124 0.876 14 C -0.129 4.129 15 C -0.086 4.086 16 H 0.098 0.902 17 C -0.068 4.068 18 C -0.054 4.054 19 Cl -0.080 7.080 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.139 4.139 25 C -0.027 4.027 26 C -0.123 4.123 27 H 0.388 0.612 28 H 0.130 0.870 29 H -0.270 1.270 30 H -0.304 1.304 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.426 0.574 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.144 0.856 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 6.730 -0.755 6.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.201 4.201 3 Si 0.670 3.330 4 C -0.062 4.062 5 C -0.155 4.155 6 C -0.038 4.038 7 C -0.763 4.763 8 S 2.803 3.197 9 O -0.967 6.967 10 O -0.980 6.980 11 N -0.851 5.851 12 C 0.012 3.988 13 H 0.141 0.859 14 C -0.168 4.168 15 C -0.104 4.104 16 H 0.116 0.884 17 C -0.069 4.069 18 C -0.080 4.080 19 Cl -0.051 7.051 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.178 4.178 25 C -0.047 4.047 26 C -0.142 4.142 27 H 0.237 0.763 28 H 0.147 0.853 29 H -0.196 1.196 30 H -0.232 1.232 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.262 0.738 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.162 0.838 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.168 6.744 -0.229 6.750 hybrid contribution -2.178 -0.802 -0.266 2.336 sum -2.346 5.942 -0.495 6.408 Atomic orbital electron populations 1.86605 1.17981 1.80413 1.50254 1.25414 0.83858 1.12365 0.98456 0.93988 0.90364 0.71560 0.77107 1.20772 0.94964 0.94648 0.95784 1.21395 0.98656 1.01184 0.94297 1.21180 0.93942 0.91490 0.97145 1.30778 1.15936 1.07866 1.21739 1.01136 0.73058 0.72365 0.73106 1.93577 1.45978 1.75588 1.81582 1.93574 1.86831 1.32659 1.84931 1.55136 1.60532 1.15553 1.53846 1.21840 0.98312 0.82643 0.95971 0.85854 1.23426 0.93468 1.04443 0.95460 1.21718 0.93615 0.99441 0.95650 0.88392 1.19761 0.95335 0.94604 0.97198 1.21086 0.99960 0.84322 1.02642 1.98365 1.97599 1.11527 1.97643 1.21276 0.99043 0.94752 0.99152 1.21435 0.99230 0.93488 0.99631 1.21613 0.94444 1.01640 0.95619 1.21298 1.00099 0.91874 0.99423 1.23639 0.95316 1.02476 0.96401 1.21098 0.91485 0.99815 0.92278 1.21291 1.00372 0.94575 0.97953 0.76256 0.85273 1.19581 1.23209 0.82352 0.81996 0.73756 0.87007 0.90527 0.84733 0.83552 0.83216 0.82646 0.90506 0.86729 0.83789 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.37 12.77 -148.98 -1.90 -1.53 16 2 C -0.09 0.35 2.82 71.24 0.20 0.55 16 3 Si 0.77 -4.08 29.79 68.60 2.04 -2.04 16 4 C -0.06 0.19 5.39 -19.87 -0.11 0.08 16 5 C -0.14 0.68 8.67 22.27 0.19 0.87 16 6 C -0.02 0.06 9.52 22.27 0.21 0.28 16 7 C -0.67 0.41 5.95 22.27 0.13 0.54 16 8 S 2.71 4.89 5.71 -56.49 -0.32 4.57 16 9 O -0.98 -6.49 16.80 -128.00 -2.15 -8.64 16 10 O -0.99 -8.64 17.28 -128.00 -2.21 -10.85 16 11 N -1.09 4.08 5.73 -167.19 -0.96 3.12 16 12 C 0.12 -0.76 4.51 45.52 0.21 -0.55 16 13 H 0.12 -1.10 7.77 -2.39 -0.02 -1.12 16 14 C -0.13 0.73 7.33 31.12 0.23 0.96 16 15 C -0.09 0.34 3.58 -11.01 -0.04 0.30 16 16 H 0.10 -0.22 6.54 -2.39 -0.02 -0.23 16 17 C -0.07 0.11 5.29 -19.84 -0.10 0.00 16 18 C -0.05 -0.09 6.31 22.32 0.14 0.06 16 19 Cl -0.08 -0.23 27.16 -2.72 -0.07 -0.30 16 20 C -0.12 -0.04 9.83 22.29 0.22 0.18 16 21 C -0.12 0.31 10.05 22.27 0.22 0.54 16 22 C -0.12 0.52 10.05 22.27 0.22 0.74 16 23 C -0.11 0.51 8.62 22.26 0.19 0.71 16 24 C -0.14 1.01 7.25 31.12 0.23 1.23 16 25 C -0.03 0.00 9.52 22.27 0.21 0.21 16 26 C -0.12 0.13 9.61 22.27 0.21 0.34 16 27 H 0.39 -2.56 8.70 -74.06 -0.64 -3.21 16 28 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 29 H -0.27 0.83 7.11 99.48 0.71 1.54 16 30 H -0.30 -0.99 7.11 99.48 0.71 -0.28 16 31 H 0.16 -1.56 4.88 -2.91 -0.01 -1.58 16 32 H 0.16 -1.19 7.62 -2.91 -0.02 -1.22 16 33 H 0.43 -2.38 8.78 -96.75 -0.85 -3.23 16 34 H 0.11 -0.90 7.73 -2.39 -0.02 -0.92 16 35 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 37 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 38 H 0.15 -1.35 8.06 -2.91 -0.02 -1.37 16 39 H 0.16 -1.56 6.64 -2.91 -0.02 -1.58 16 40 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.11 -1.21 6.30 -2.39 -0.02 -1.22 16 42 H 0.14 -0.17 7.62 -2.91 -0.02 -0.19 16 43 H 0.14 -0.29 8.06 -2.91 -0.02 -0.32 16 Total: 0.00 -22.80 382.82 -3.38 -26.18 By element: Atomic # 1 Polarization: -17.17 SS G_CDS: -0.38 Total: -17.55 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 2.57 Total: 7.04 kcal Atomic # 7 Polarization: 4.08 SS G_CDS: -0.96 Total: 3.12 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -6.27 Total: -21.03 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.04 Total: -2.04 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -0.32 Total: 4.57 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.07 Total: -0.30 kcal Total: -22.80 -3.38 -26.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.839 kcal (2) G-P(sol) polarization free energy of solvation -22.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds