Wall clock time and date at job start Mon Mar 8 2021 08:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47098 * 2 1 4 4 C 1.50706 * 109.47245 * 120.00020 * 2 1 3 5 5 C 1.33383 * 122.53781 * 74.99587 * 4 2 1 6 6 S 1.76199 * 125.20691 * 0.06499 * 5 4 2 7 7 O 1.42103 * 106.39981 * 293.52211 * 6 5 4 8 8 O 1.42101 * 106.40189 * 66.43600 * 6 5 4 9 9 N 1.65596 * 107.22058 * 179.97438 * 6 5 4 10 10 C 1.46501 * 120.00037 * 64.99628 * 9 6 5 11 11 H 1.09001 * 112.84977 * 13.80701 * 10 9 6 12 12 C 1.53787 * 113.61540 * 145.00069 * 10 9 6 13 13 C 1.53780 * 87.07796 * 89.11421 * 12 10 9 14 14 H 1.08999 * 113.61699 * 270.88475 * 13 12 10 15 15 C 1.50707 * 113.60896 * 140.06662 * 13 12 10 16 16 C 1.38329 * 120.00685 * 120.00167 * 15 13 12 17 17 Cl 1.73603 * 120.01282 * 0.02562 * 16 15 13 18 18 C 1.38367 * 119.97571 * 179.97438 * 16 15 13 19 19 C 1.38199 * 119.98646 * 359.97438 * 18 16 15 20 20 C 1.38259 * 120.01193 * 0.02562 * 19 18 16 21 21 C 1.38230 * 120.02554 * 359.70083 * 20 19 18 22 22 C 1.53776 * 87.08368 * 25.43703 * 13 12 10 23 23 S 1.75889 * 109.59330 * 180.02562 * 5 4 2 24 24 C 1.75890 * 90.96802 * 0.02562 * 23 5 4 25 25 C 1.33390 * 109.59395 * 359.97438 * 24 23 5 26 26 H 0.96694 * 113.99926 * 299.99945 * 1 2 3 27 27 H 1.08998 * 109.47554 * 240.00114 * 2 1 3 28 28 H 1.48491 * 109.99966 * 299.99765 * 3 2 1 29 29 H 1.48497 * 109.99899 * 61.32053 * 3 2 1 30 30 H 0.97005 * 120.00033 * 244.99577 * 9 6 5 31 31 H 1.08992 * 113.61583 * 203.66678 * 12 10 9 32 32 H 1.09005 * 113.61207 * 334.48669 * 12 10 9 33 33 H 1.08008 * 120.01008 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.99444 * 180.02562 * 19 18 16 35 35 H 1.08002 * 119.98454 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.99314 * 180.29901 * 21 20 19 37 37 H 1.08997 * 113.61491 * 220.01840 * 22 13 12 38 38 H 1.08997 * 113.62088 * 89.11068 * 22 13 12 39 39 H 1.07998 * 125.19877 * 179.97438 * 24 23 5 40 40 H 1.08000 * 122.53444 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8961 -2.0378 1.3572 6 16 1.2771 -3.1578 0.1460 7 8 -0.1200 -2.9153 0.0521 8 8 2.1572 -3.0724 -0.9664 9 7 1.4463 -4.6864 0.7598 10 6 0.6879 -5.0870 1.9475 11 1 -0.1170 -4.3930 2.1897 12 6 0.2464 -6.5600 1.9287 13 6 1.5863 -6.8885 2.6080 14 1 2.3963 -7.0829 1.9049 15 6 1.4771 -7.9414 3.6807 16 6 2.1928 -9.1198 3.5688 17 17 3.2176 -9.3861 2.1930 18 6 2.0924 -10.0859 4.5543 19 6 1.2777 -9.8727 5.6500 20 6 0.5626 -8.6947 5.7614 21 6 0.6669 -7.7269 4.7799 22 6 1.5740 -5.4498 3.1509 23 16 2.5630 -2.4992 2.9180 24 6 2.8603 -0.8135 3.3228 25 6 2.4635 -0.0348 2.3151 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5138 -0.8900 28 1 1.5616 2.4678 -1.2084 29 1 1.5879 2.4585 1.2242 30 1 2.0477 -5.3166 0.3330 31 1 -0.6221 -6.7635 2.5549 32 1 0.1510 -6.9744 0.9250 33 1 2.6507 -11.0064 4.4673 34 1 1.1996 -10.6265 6.4196 35 1 -0.0737 -8.5284 6.6181 36 1 0.1118 -6.8048 4.8698 37 1 2.5517 -4.9683 3.1341 38 1 1.0683 -5.3498 4.1113 39 1 3.2974 -0.4628 4.2460 40 1 2.5501 1.0413 2.3438 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10565096_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:21 Heat of formation + Delta-G solvation = -11.951753 kcal Electronic energy + Delta-G solvation = -28851.803792 eV Core-core repulsion = 24686.011040 eV Total energy + Delta-G solvation = -4165.792751 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.45759 -40.10379 -39.45426 -38.08683 -37.43460 -37.18775 -36.77571 -34.51010 -31.77999 -31.65267 -31.46675 -28.05013 -26.95066 -26.29519 -24.39724 -23.85820 -22.85244 -21.70233 -20.61423 -19.92214 -19.80954 -18.62400 -18.42447 -17.89426 -17.29530 -16.80704 -16.69085 -16.48896 -16.34698 -15.93777 -15.89433 -15.43067 -15.32952 -15.07418 -14.93294 -14.69336 -14.26617 -14.15756 -13.99433 -13.63871 -13.57345 -13.48756 -13.04855 -12.95364 -12.88995 -12.75155 -12.64582 -12.62308 -12.52933 -12.26947 -12.19043 -11.96812 -11.61302 -11.55073 -11.38878 -10.73785 -10.70885 -10.45100 -9.94154 -9.72803 -9.66205 -5.03600 -0.69435 -0.68680 0.08780 0.17508 0.20316 0.56968 1.13424 1.14130 1.19047 1.49811 1.86460 1.89087 2.51868 2.63416 3.22625 3.24653 3.38277 3.40942 3.44298 3.60468 3.69620 3.77675 3.88778 3.93783 3.98582 3.99418 4.09267 4.22792 4.27171 4.29919 4.50718 4.53796 4.60309 4.60953 4.73635 4.77346 4.80011 4.85338 4.87013 4.99338 5.16495 5.19883 5.35566 5.39439 5.72390 5.77519 6.33080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.007 3.993 5 C -0.767 4.767 6 S 2.716 3.284 7 O -0.925 6.925 8 O -0.947 6.947 9 N -1.100 6.100 10 C 0.117 3.883 11 H 0.113 0.887 12 C -0.128 4.128 13 C -0.080 4.080 14 H 0.108 0.892 15 C -0.062 4.062 16 C -0.033 4.033 17 Cl -0.067 7.067 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.150 4.150 23 S 0.213 5.787 24 C -0.169 4.169 25 C -0.164 4.164 26 H 0.378 0.622 27 H 0.127 0.873 28 H -0.248 1.248 29 H -0.253 1.253 30 H 0.423 0.577 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.177 0.823 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -0.293 6.991 7.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.609 3.391 4 C -0.010 4.010 5 C -0.967 4.967 6 S 2.800 3.200 7 O -0.914 6.914 8 O -0.937 6.937 9 N -0.860 5.860 10 C 0.009 3.991 11 H 0.131 0.869 12 C -0.167 4.167 13 C -0.098 4.098 14 H 0.127 0.873 15 C -0.063 4.063 16 C -0.060 4.060 17 Cl -0.038 7.038 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.190 4.190 23 S 0.479 5.521 24 C -0.306 4.306 25 C -0.194 4.194 26 H 0.226 0.774 27 H 0.145 0.855 28 H -0.172 1.172 29 H -0.178 1.178 30 H 0.258 0.742 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.195 0.805 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.890 -0.799 6.384 6.706 hybrid contribution -0.402 0.877 0.417 1.051 sum 1.487 0.078 6.802 6.963 Atomic orbital electron populations 1.86788 1.15604 1.79975 1.49024 1.25344 0.85568 1.13482 0.97302 0.94574 0.91125 0.72539 0.80865 1.18953 0.94154 0.91312 0.96559 1.35721 1.26019 1.14367 1.20606 1.01607 0.74348 0.71631 0.72374 1.93664 1.29449 1.83859 1.84478 1.93634 1.67386 1.85664 1.47017 1.55437 1.57978 1.30989 1.41615 1.21781 0.94127 0.98606 0.84574 0.86919 1.23377 0.96979 0.93961 1.02420 1.21699 0.99741 0.92305 0.96053 0.87350 1.19538 0.96585 0.93788 0.96344 1.20871 0.97529 0.96368 0.91194 1.98380 1.66573 1.96137 1.42673 1.21113 0.99485 0.98790 0.93271 1.21177 0.96297 0.97869 0.97576 1.21291 0.99014 0.93619 0.99041 1.21005 0.98497 0.99799 0.93196 1.23736 1.01331 0.95297 0.98618 1.84268 1.56167 1.05240 1.06378 1.26249 1.03393 0.97516 1.03412 1.20319 1.03650 1.02040 0.93359 0.77383 0.85541 1.17230 1.17777 0.74173 0.88086 0.89723 0.84870 0.85017 0.85235 0.84899 0.90036 0.87838 0.80534 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.46 12.30 -36.12 -0.44 -1.91 16 2 C -0.11 -0.16 2.33 36.01 0.08 -0.08 16 3 Si 0.71 -0.56 30.46 -169.99 -5.18 -5.73 16 4 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -0.97 6.46 29.04 0.19 -0.78 16 6 S 2.72 7.27 5.04 -107.50 -0.54 6.73 16 7 O -0.92 -5.15 16.96 -59.57 -1.01 -6.16 16 8 O -0.95 -5.00 17.50 -57.17 -1.00 -6.00 16 9 N -1.10 0.81 5.54 -4.19 -0.02 0.78 16 10 C 0.12 -0.22 3.91 -67.11 -0.26 -0.48 16 11 H 0.11 -0.24 7.77 -51.93 -0.40 -0.64 16 12 C -0.13 0.28 7.33 -25.92 -0.19 0.09 16 13 C -0.08 0.15 3.58 -90.96 -0.33 -0.18 16 14 H 0.11 -0.17 6.53 -51.93 -0.34 -0.51 16 15 C -0.06 0.05 5.29 -104.59 -0.55 -0.50 16 16 C -0.03 -0.01 6.31 -39.50 -0.25 -0.26 16 17 Cl -0.07 -0.04 27.16 -51.86 -1.41 -1.45 16 18 C -0.11 0.03 9.83 -39.55 -0.39 -0.36 16 19 C -0.11 0.14 10.05 -39.59 -0.40 -0.26 16 20 C -0.11 0.19 10.05 -39.58 -0.40 -0.20 16 21 C -0.11 0.19 8.63 -39.59 -0.34 -0.15 16 22 C -0.15 0.44 6.20 -25.92 -0.16 0.28 16 23 S 0.21 -0.32 19.55 -107.50 -2.10 -2.42 16 24 C -0.17 0.34 11.23 29.04 0.33 0.67 16 25 C -0.16 0.17 8.74 -41.21 -0.36 -0.19 16 26 H 0.38 -0.30 8.70 45.56 0.40 0.09 16 27 H 0.13 0.27 7.24 -51.93 -0.38 -0.11 16 28 H -0.25 -0.55 7.11 56.52 0.40 -0.15 16 29 H -0.25 0.04 6.80 56.52 0.38 0.43 16 30 H 0.42 -0.99 8.78 -34.47 -0.30 -1.29 16 31 H 0.10 -0.30 7.73 -51.93 -0.40 -0.70 16 32 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 33 H 0.13 -0.18 8.06 -52.48 -0.42 -0.60 16 34 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 35 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 36 H 0.13 -0.51 6.65 -52.49 -0.35 -0.86 16 37 H 0.08 -0.25 6.24 -51.93 -0.32 -0.58 16 38 H 0.10 -0.45 6.31 -51.93 -0.33 -0.77 16 39 H 0.18 -0.83 8.06 -52.49 -0.42 -1.25 16 40 H 0.16 -0.43 5.53 -52.49 -0.29 -0.72 16 LS Contribution 365.34 15.07 5.51 5.51 Total: 0.00 -9.73 365.34 -13.82 -23.55 By element: Atomic # 1 Polarization: -5.90 SS G_CDS: -4.05 Total: -9.95 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.58 Total: -2.95 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -0.02 Total: 0.78 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -2.46 Total: -14.07 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: -5.18 Total: -5.73 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -2.64 Total: 4.31 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.41 Total: -1.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -9.73 -13.82 -23.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.603 kcal (2) G-P(sol) polarization free energy of solvation -9.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds