Wall clock time and date at job start Mon Mar 8 2021 08:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47098 * 2 1 4 4 C 1.50706 * 109.47245 * 120.00020 * 2 1 3 5 5 C 1.33383 * 122.53781 * 74.99587 * 4 2 1 6 6 S 1.76199 * 125.20691 * 0.06499 * 5 4 2 7 7 O 1.42103 * 106.39981 * 293.52211 * 6 5 4 8 8 O 1.42101 * 106.40189 * 66.43600 * 6 5 4 9 9 N 1.65596 * 107.22058 * 179.97438 * 6 5 4 10 10 C 1.46501 * 120.00037 * 64.99628 * 9 6 5 11 11 H 1.09001 * 112.84977 * 13.80701 * 10 9 6 12 12 C 1.53787 * 113.61540 * 145.00069 * 10 9 6 13 13 C 1.53780 * 87.07796 * 89.11421 * 12 10 9 14 14 H 1.08999 * 113.61699 * 270.88475 * 13 12 10 15 15 C 1.50707 * 113.60896 * 140.06662 * 13 12 10 16 16 C 1.38329 * 120.00685 * 120.00167 * 15 13 12 17 17 Cl 1.73603 * 120.01282 * 0.02562 * 16 15 13 18 18 C 1.38367 * 119.97571 * 179.97438 * 16 15 13 19 19 C 1.38199 * 119.98646 * 359.97438 * 18 16 15 20 20 C 1.38259 * 120.01193 * 0.02562 * 19 18 16 21 21 C 1.38230 * 120.02554 * 359.70083 * 20 19 18 22 22 C 1.53776 * 87.08368 * 25.43703 * 13 12 10 23 23 S 1.75889 * 109.59330 * 180.02562 * 5 4 2 24 24 C 1.75890 * 90.96802 * 0.02562 * 23 5 4 25 25 C 1.33390 * 109.59395 * 359.97438 * 24 23 5 26 26 H 0.96694 * 113.99926 * 299.99945 * 1 2 3 27 27 H 1.08998 * 109.47554 * 240.00114 * 2 1 3 28 28 H 1.48491 * 109.99966 * 299.99765 * 3 2 1 29 29 H 1.48497 * 109.99899 * 61.32053 * 3 2 1 30 30 H 0.97005 * 120.00033 * 244.99577 * 9 6 5 31 31 H 1.08992 * 113.61583 * 203.66678 * 12 10 9 32 32 H 1.09005 * 113.61207 * 334.48669 * 12 10 9 33 33 H 1.08008 * 120.01008 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.99444 * 180.02562 * 19 18 16 35 35 H 1.08002 * 119.98454 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.99314 * 180.29901 * 21 20 19 37 37 H 1.08997 * 113.61491 * 220.01840 * 22 13 12 38 38 H 1.08997 * 113.62088 * 89.11068 * 22 13 12 39 39 H 1.07998 * 125.19877 * 179.97438 * 24 23 5 40 40 H 1.08000 * 122.53444 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8961 -2.0378 1.3572 6 16 1.2771 -3.1578 0.1460 7 8 -0.1200 -2.9153 0.0521 8 8 2.1572 -3.0724 -0.9664 9 7 1.4463 -4.6864 0.7598 10 6 0.6879 -5.0870 1.9475 11 1 -0.1170 -4.3930 2.1897 12 6 0.2464 -6.5600 1.9287 13 6 1.5863 -6.8885 2.6080 14 1 2.3963 -7.0829 1.9049 15 6 1.4771 -7.9414 3.6807 16 6 2.1928 -9.1198 3.5688 17 17 3.2176 -9.3861 2.1930 18 6 2.0924 -10.0859 4.5543 19 6 1.2777 -9.8727 5.6500 20 6 0.5626 -8.6947 5.7614 21 6 0.6669 -7.7269 4.7799 22 6 1.5740 -5.4498 3.1509 23 16 2.5630 -2.4992 2.9180 24 6 2.8603 -0.8135 3.3228 25 6 2.4635 -0.0348 2.3151 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5138 -0.8900 28 1 1.5616 2.4678 -1.2084 29 1 1.5879 2.4585 1.2242 30 1 2.0477 -5.3166 0.3330 31 1 -0.6221 -6.7635 2.5549 32 1 0.1510 -6.9744 0.9250 33 1 2.6507 -11.0064 4.4673 34 1 1.1996 -10.6265 6.4196 35 1 -0.0737 -8.5284 6.6181 36 1 0.1118 -6.8048 4.8698 37 1 2.5517 -4.9683 3.1341 38 1 1.0683 -5.3498 4.1113 39 1 3.2974 -0.4628 4.2460 40 1 2.5501 1.0413 2.3438 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10565096_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:19 Heat of formation + Delta-G solvation = -12.606317 kcal Electronic energy + Delta-G solvation = -28851.832176 eV Core-core repulsion = 24686.011040 eV Total energy + Delta-G solvation = -4165.821135 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31164 -40.08035 -39.32920 -38.37782 -37.39985 -37.26837 -37.06352 -34.46137 -31.64065 -31.55011 -31.38940 -28.09489 -26.75552 -26.16032 -24.34181 -23.72555 -22.72292 -21.74518 -20.52715 -19.92783 -19.80621 -18.73598 -18.34292 -17.89538 -17.27379 -16.75909 -16.73330 -16.41938 -16.35435 -15.99449 -15.90859 -15.29926 -15.28816 -14.98281 -14.79112 -14.57892 -14.21470 -14.09720 -13.92143 -13.66704 -13.54778 -13.38630 -13.35412 -13.26365 -12.80933 -12.78176 -12.66310 -12.55428 -12.45861 -12.35723 -12.07602 -11.87499 -11.55278 -11.45217 -11.24902 -10.78911 -10.62999 -10.38498 -9.81170 -9.61114 -9.55389 -4.98020 -0.84389 -0.64411 0.20383 0.25097 0.31691 0.70119 1.14719 1.19382 1.27769 1.53000 1.81591 1.90213 2.47932 2.65822 3.20378 3.37265 3.45073 3.46203 3.57235 3.60561 3.86113 3.94556 3.99752 4.06091 4.14019 4.16522 4.20290 4.30843 4.40663 4.43042 4.66240 4.72470 4.74292 4.78860 4.89558 4.91733 4.96035 5.02738 5.04332 5.10433 5.32770 5.35126 5.51539 5.54205 5.86388 5.90014 6.37824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.134 4.134 3 Si 0.799 3.201 4 C 0.001 3.999 5 C -0.796 4.796 6 S 2.725 3.275 7 O -0.964 6.964 8 O -0.985 6.985 9 N -1.092 6.092 10 C 0.109 3.891 11 H 0.116 0.884 12 C -0.127 4.127 13 C -0.081 4.081 14 H 0.101 0.899 15 C -0.068 4.068 16 C -0.052 4.052 17 Cl -0.080 7.080 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.142 4.142 23 S 0.246 5.754 24 C -0.157 4.157 25 C -0.176 4.176 26 H 0.391 0.609 27 H 0.108 0.892 28 H -0.296 1.296 29 H -0.249 1.249 30 H 0.429 0.571 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.210 0.790 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 0.448 9.850 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.242 4.242 3 Si 0.699 3.301 4 C -0.017 4.017 5 C -0.999 4.999 6 S 2.813 3.187 7 O -0.954 6.954 8 O -0.975 6.975 9 N -0.854 5.854 10 C 0.002 3.998 11 H 0.134 0.866 12 C -0.166 4.166 13 C -0.099 4.099 14 H 0.119 0.881 15 C -0.069 4.069 16 C -0.079 4.079 17 Cl -0.051 7.051 18 C -0.141 4.141 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.181 4.181 23 S 0.513 5.487 24 C -0.294 4.294 25 C -0.205 4.205 26 H 0.241 0.759 27 H 0.126 0.874 28 H -0.224 1.224 29 H -0.173 1.173 30 H 0.267 0.733 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.227 0.773 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.224 -0.117 9.242 9.507 hybrid contribution -0.528 0.576 -0.419 0.887 sum 1.696 0.459 8.824 8.997 Atomic orbital electron populations 1.86739 1.16722 1.80737 1.50070 1.25781 0.85105 1.16037 0.97277 0.93576 0.89601 0.68793 0.78155 1.19092 0.94308 0.91385 0.96903 1.35416 1.28019 1.14345 1.22088 1.00804 0.73262 0.72230 0.72385 1.93609 1.31571 1.84746 1.85429 1.93574 1.67875 1.86480 1.49604 1.55155 1.58289 1.29828 1.42155 1.21960 0.94533 0.98824 0.84478 0.86642 1.23418 0.97403 0.93488 1.02314 1.21679 0.99575 0.92773 0.95906 0.88097 1.19697 0.96653 0.93571 0.96947 1.21072 0.98267 0.97303 0.91216 1.98368 1.67079 1.96248 1.43421 1.21275 1.00144 0.98983 0.93740 1.21436 0.96017 0.98645 0.97552 1.21611 0.98791 0.93241 0.99611 1.21299 0.98092 1.00685 0.92573 1.23773 1.01431 0.94123 0.98808 1.84090 1.54961 1.05690 1.03982 1.26726 1.01714 0.96904 1.04078 1.20452 1.04041 1.03131 0.92858 0.75949 0.87403 1.22373 1.17329 0.73350 0.86854 0.90466 0.84695 0.83538 0.83213 0.82665 0.89699 0.85821 0.77280 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -4.16 12.30 -148.13 -1.82 -5.98 16 2 C -0.13 -0.62 2.33 71.24 0.17 -0.45 16 3 Si 0.80 -1.17 30.46 68.60 2.09 0.92 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.10 16 5 C -0.80 -2.50 6.46 66.72 0.43 -2.07 16 6 S 2.73 20.30 5.04 -56.49 -0.28 20.02 16 7 O -0.96 -13.22 16.96 -125.71 -2.13 -15.35 16 8 O -0.99 -13.30 17.50 -128.00 -2.24 -15.54 16 9 N -1.09 0.25 5.54 -167.18 -0.93 -0.68 16 10 C 0.11 -0.40 3.91 45.52 0.18 -0.23 16 11 H 0.12 -0.48 7.77 -2.39 -0.02 -0.49 16 12 C -0.13 0.54 7.33 31.12 0.23 0.77 16 13 C -0.08 0.31 3.58 -11.01 -0.04 0.27 16 14 H 0.10 -0.24 6.53 -2.39 -0.02 -0.26 16 15 C -0.07 0.13 5.29 -19.84 -0.10 0.03 16 16 C -0.05 -0.06 6.31 22.32 0.14 0.08 16 17 Cl -0.08 -0.20 27.16 -2.72 -0.07 -0.27 16 18 C -0.12 0.03 9.83 22.29 0.22 0.25 16 19 C -0.12 0.38 10.05 22.27 0.22 0.60 16 20 C -0.11 0.57 10.05 22.27 0.22 0.79 16 21 C -0.11 0.55 8.63 22.27 0.19 0.74 16 22 C -0.14 0.98 6.20 31.12 0.19 1.17 16 23 S 0.25 -1.07 19.55 -56.49 -1.10 -2.17 16 24 C -0.16 1.04 11.23 66.72 0.75 1.79 16 25 C -0.18 0.64 8.74 21.22 0.19 0.82 16 26 H 0.39 -0.09 8.70 -74.06 -0.64 -0.73 16 27 H 0.11 0.80 7.24 -2.39 -0.02 0.78 16 28 H -0.30 -1.84 7.11 99.48 0.71 -1.13 16 29 H -0.25 0.55 6.80 99.48 0.68 1.22 16 30 H 0.43 -1.32 8.78 -96.74 -0.85 -2.17 16 31 H 0.11 -0.76 7.73 -2.39 -0.02 -0.78 16 32 H 0.08 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 34 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 35 H 0.15 -1.41 8.06 -2.91 -0.02 -1.43 16 36 H 0.16 -1.59 6.65 -2.91 -0.02 -1.61 16 37 H 0.08 -0.62 6.24 -2.39 -0.01 -0.64 16 38 H 0.12 -1.35 6.31 -2.39 -0.02 -1.37 16 39 H 0.21 -2.83 8.06 -2.91 -0.02 -2.85 16 40 H 0.17 -1.40 5.53 -2.91 -0.02 -1.41 16 Total: 0.00 -25.00 365.34 -3.97 -28.97 By element: Atomic # 1 Polarization: -14.04 SS G_CDS: -0.36 Total: -14.39 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 2.88 Total: 4.48 kcal Atomic # 7 Polarization: 0.25 SS G_CDS: -0.93 Total: -0.68 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -6.19 Total: -36.87 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.09 Total: 0.92 kcal Atomic # 16 Polarization: 19.23 SS G_CDS: -1.39 Total: 17.84 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.07 Total: -0.27 kcal Total: -25.00 -3.97 -28.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.368 kcal (2) G-P(sol) polarization free energy of solvation -25.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds