Wall clock time and date at job start Mon Mar 8 2021 08:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86305 * 109.46948 * 2 1 4 4 C 1.50704 * 109.47132 * 240.00555 * 2 1 3 5 5 C 1.33390 * 125.20126 * 317.48429 * 4 2 1 6 6 S 1.76205 * 122.53856 * 359.97438 * 5 4 2 7 7 O 1.42101 * 106.40435 * 314.87711 * 6 5 4 8 8 O 1.42097 * 106.39970 * 181.95314 * 6 5 4 9 9 N 1.65601 * 107.21541 * 68.41705 * 6 5 4 10 10 C 1.46497 * 120.00206 * 66.71008 * 9 6 5 11 11 H 1.09008 * 112.84737 * 12.69854 * 10 9 6 12 12 C 1.53776 * 113.61749 * 143.89183 * 10 9 6 13 13 C 1.53782 * 87.07920 * 89.11670 * 12 10 9 14 14 H 1.08994 * 113.61969 * 270.88254 * 13 12 10 15 15 C 1.50703 * 113.61311 * 140.06507 * 13 12 10 16 16 C 1.38335 * 120.00572 * 121.53023 * 15 13 12 17 17 Cl 1.73600 * 120.01424 * 0.02562 * 16 15 13 18 18 C 1.38373 * 119.97485 * 179.97438 * 16 15 13 19 19 C 1.38195 * 119.98611 * 0.02562 * 18 16 15 20 20 C 1.38263 * 120.01343 * 0.02562 * 19 18 16 21 21 C 1.38222 * 120.02481 * 359.70628 * 20 19 18 22 22 C 1.53777 * 87.08127 * 25.43682 * 13 12 10 23 23 C 1.38419 * 114.92128 * 180.25483 * 5 4 2 24 24 C 1.33388 * 114.92080 * 359.49064 * 23 5 4 25 25 S 1.75883 * 125.20507 * 137.46594 * 4 2 1 26 26 H 0.96704 * 114.00423 * 53.12326 * 1 2 3 27 27 H 1.08999 * 109.47656 * 119.99804 * 2 1 3 28 28 H 1.48503 * 109.99866 * 298.67904 * 3 2 1 29 29 H 1.48502 * 110.00076 * 60.00155 * 3 2 1 30 30 H 0.97001 * 119.99946 * 246.71126 * 9 6 5 31 31 H 1.09005 * 113.61240 * 334.57674 * 12 10 9 32 32 H 1.09000 * 113.62248 * 203.66616 * 12 10 9 33 33 H 1.07994 * 120.01018 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.99294 * 180.02562 * 19 18 16 35 35 H 1.08002 * 119.98901 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99625 * 180.29556 * 21 20 19 37 37 H 1.08994 * 113.61715 * 89.10914 * 22 13 12 38 38 H 1.08992 * 113.61637 * 220.01867 * 22 13 12 39 39 H 1.07999 * 122.54310 * 179.73334 * 23 5 4 40 40 H 1.08005 * 125.20783 * 180.20783 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.4301 -1.8445 -1.7221 6 16 0.0748 -2.6850 -0.9728 7 8 0.3385 -2.7069 0.4234 8 8 -0.1427 -3.8604 -1.7412 9 7 -1.2660 -1.7357 -1.1806 10 6 -1.8055 -1.5140 -2.5245 11 1 -1.3827 -2.1906 -3.2673 12 6 -3.3406 -1.4345 -2.5668 13 6 -3.1907 0.0760 -2.3199 14 1 -3.1681 0.3458 -1.2641 15 6 -4.1536 0.9166 -3.1182 16 6 -5.0336 1.7645 -2.4698 17 17 -5.0286 1.8610 -0.7365 18 6 -5.9171 2.5365 -3.2035 19 6 -5.9203 2.4596 -4.5833 20 6 -5.0412 1.6112 -5.2307 21 6 -4.1547 0.8440 -4.4986 22 6 -1.7956 -0.0381 -2.9566 23 6 2.0594 -2.3145 -2.8620 24 6 3.0646 -1.5563 -3.3022 25 16 3.2677 -0.1703 -2.2385 26 1 -0.3934 0.5301 -0.7067 27 1 1.7924 -0.5138 0.8900 28 1 1.5878 2.4586 -1.2243 29 1 1.5614 2.4679 1.2085 30 1 -1.6943 -1.3264 -0.4125 31 1 -3.8279 -1.9644 -1.7483 32 1 -3.7639 -1.6777 -3.5414 33 1 -6.6046 3.1983 -2.6979 34 1 -6.6095 3.0624 -5.1560 35 1 -5.0443 1.5511 -6.3090 36 1 -3.4650 0.1850 -5.0050 37 1 -1.7964 0.1003 -4.0377 38 1 -1.0356 0.5592 -2.4530 39 1 1.7567 -3.2240 -3.3596 40 1 3.6652 -1.7641 -4.1755 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10565096_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:24 Heat of formation + Delta-G solvation = -6.445625 kcal Electronic energy + Delta-G solvation = -29735.719125 eV Core-core repulsion = 25570.165137 eV Total energy + Delta-G solvation = -4165.553988 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.31063 -39.74046 -39.26456 -38.41923 -37.51235 -37.42574 -36.94609 -34.26327 -31.82108 -31.66860 -31.45255 -27.53281 -26.67571 -26.12924 -24.38514 -23.73813 -22.68167 -21.80409 -20.56291 -19.93393 -19.40143 -18.79056 -18.20005 -18.02965 -17.19870 -16.94983 -16.69785 -16.50654 -16.33369 -15.99623 -15.44130 -15.29332 -15.15142 -14.89643 -14.78857 -14.55993 -14.21257 -14.08542 -13.89232 -13.83370 -13.45983 -13.36369 -13.27014 -13.15368 -12.81351 -12.77799 -12.60679 -12.52375 -12.45358 -12.31099 -12.08174 -11.85606 -11.58853 -11.48577 -11.22117 -11.15953 -10.41193 -10.09770 -9.83872 -9.70616 -9.58468 -5.15996 -0.69167 -0.46437 0.17873 0.28720 0.39269 0.66255 1.05777 1.14800 1.16463 1.49389 1.80488 2.06191 2.62992 2.71008 3.09205 3.27203 3.41058 3.47940 3.59371 3.65663 3.88593 3.94172 4.04957 4.12001 4.19328 4.25499 4.28870 4.38726 4.40621 4.45501 4.68024 4.72351 4.75644 4.79341 4.91818 4.95149 4.97567 5.01590 5.05552 5.16806 5.30045 5.37973 5.48794 5.54613 5.86809 6.09801 6.21013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.081 4.081 3 Si 0.741 3.259 4 C -0.105 4.105 5 C -0.673 4.673 6 S 2.728 3.272 7 O -0.981 6.981 8 O -0.993 6.993 9 N -1.079 6.079 10 C 0.121 3.879 11 H 0.114 0.886 12 C -0.130 4.130 13 C -0.083 4.083 14 H 0.102 0.898 15 C -0.068 4.068 16 C -0.053 4.053 17 Cl -0.080 7.080 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.137 4.137 23 C -0.095 4.095 24 C -0.208 4.208 25 S 0.194 5.806 26 H 0.385 0.615 27 H 0.147 0.853 28 H -0.249 1.249 29 H -0.266 1.266 30 H 0.428 0.572 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 5.141 -6.688 8.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.191 4.191 3 Si 0.639 3.361 4 C -0.227 4.227 5 C -0.775 4.775 6 S 2.817 3.183 7 O -0.972 6.972 8 O -0.983 6.983 9 N -0.841 5.841 10 C 0.013 3.987 11 H 0.132 0.868 12 C -0.169 4.169 13 C -0.102 4.102 14 H 0.120 0.880 15 C -0.068 4.068 16 C -0.079 4.079 17 Cl -0.051 7.051 18 C -0.142 4.142 19 C -0.137 4.137 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.176 4.176 23 C -0.123 4.123 24 C -0.344 4.344 25 S 0.458 5.542 26 H 0.237 0.763 27 H 0.164 0.836 28 H -0.173 1.173 29 H -0.190 1.190 30 H 0.267 0.733 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.175 0.825 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.553 5.943 -5.758 9.005 hybrid contribution -2.036 -0.678 -0.032 2.146 sum 1.516 5.265 -5.790 7.972 Atomic orbital electron populations 1.86673 1.17013 1.72858 1.57368 1.25189 0.84443 1.12928 0.96570 0.94104 0.90279 0.71096 0.80576 1.25152 1.00103 0.97192 1.00238 1.29641 1.25152 1.10559 1.12189 1.00637 0.72916 0.72557 0.72222 1.93546 1.85131 1.86744 1.31751 1.93541 1.85606 1.45867 1.73274 1.55192 1.44470 1.69812 1.14644 1.21782 0.95993 0.97918 0.83022 0.86794 1.23423 0.95079 0.94229 1.04152 1.21715 0.94175 0.94545 0.99728 0.88021 1.19736 0.96298 0.96383 0.94427 1.21076 1.00891 1.01672 0.84268 1.98369 1.97900 1.97575 1.11248 1.21275 0.98632 0.99389 0.94904 1.21431 0.99643 0.99273 0.93353 1.21608 0.94731 0.95313 1.01640 1.21285 0.99541 0.99806 0.92052 1.23663 0.95452 0.95657 1.02828 1.19835 0.96280 1.01690 0.94483 1.26250 1.03627 0.98888 1.05599 1.84112 1.28727 1.24162 1.17167 0.76306 0.83553 1.17322 1.19039 0.73321 0.90714 0.87244 0.84730 0.83538 0.83263 0.82829 0.86690 0.90528 0.82500 0.78472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.51 8.21 -135.44 -1.11 -0.60 16 2 C -0.08 0.10 2.13 71.24 0.15 0.26 16 3 Si 0.74 -3.19 31.01 68.60 2.13 -1.06 16 4 C -0.11 0.08 5.77 24.59 0.14 0.22 16 5 C -0.67 -1.31 5.80 21.22 0.12 -1.19 16 6 S 2.73 16.09 4.90 -56.49 -0.28 15.81 16 7 O -0.98 -12.11 16.45 -121.72 -2.00 -14.11 16 8 O -0.99 -11.31 16.80 -128.00 -2.15 -13.46 16 9 N -1.08 0.81 3.88 -167.20 -0.65 0.16 16 10 C 0.12 -0.51 4.52 45.52 0.21 -0.30 16 11 H 0.11 -0.55 7.72 -2.38 -0.02 -0.57 16 12 C -0.13 0.53 7.33 31.12 0.23 0.76 16 13 C -0.08 0.31 3.59 -11.01 -0.04 0.27 16 14 H 0.10 -0.25 6.50 -2.39 -0.02 -0.26 16 15 C -0.07 0.10 5.29 -19.84 -0.11 -0.01 16 16 C -0.05 -0.08 6.31 22.32 0.14 0.06 16 17 Cl -0.08 -0.24 27.15 -2.72 -0.07 -0.31 16 18 C -0.12 -0.05 9.83 22.29 0.22 0.17 16 19 C -0.12 0.29 10.05 22.27 0.22 0.52 16 20 C -0.12 0.48 10.05 22.27 0.22 0.71 16 21 C -0.11 0.47 8.55 22.27 0.19 0.66 16 22 C -0.14 0.95 7.21 31.12 0.22 1.18 16 23 C -0.10 -0.01 9.69 21.21 0.21 0.19 16 24 C -0.21 0.79 11.23 66.72 0.75 1.54 16 25 S 0.19 -0.90 20.78 -56.49 -1.17 -2.08 16 26 H 0.38 -2.43 6.17 -74.05 -0.46 -2.89 16 27 H 0.15 -0.07 7.89 -2.39 -0.02 -0.09 16 28 H -0.25 0.65 7.11 99.48 0.71 1.36 16 29 H -0.27 -0.49 7.11 99.48 0.71 0.22 16 30 H 0.43 -0.87 7.52 -96.74 -0.73 -1.60 16 31 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 32 H 0.11 -0.69 7.66 -2.39 -0.02 -0.70 16 33 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 34 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 35 H 0.15 -1.28 8.06 -2.91 -0.02 -1.30 16 36 H 0.15 -1.41 6.72 -2.91 -0.02 -1.43 16 37 H 0.11 -1.13 6.39 -2.39 -0.02 -1.14 16 38 H 0.08 -0.62 6.14 -2.39 -0.01 -0.63 16 39 H 0.16 -0.06 7.74 -2.91 -0.02 -0.09 16 40 H 0.20 -1.78 8.06 -2.91 -0.02 -1.81 16 Total: 0.00 -20.38 361.58 -2.46 -22.83 By element: Atomic # 1 Polarization: -12.19 SS G_CDS: -0.03 Total: -12.22 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 2.88 Total: 5.03 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -0.65 Total: 0.16 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -5.26 Total: -28.18 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.13 Total: -1.06 kcal Atomic # 16 Polarization: 15.18 SS G_CDS: -1.45 Total: 13.73 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.07 Total: -0.31 kcal Total: -20.38 -2.46 -22.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.388 kcal (2) G-P(sol) polarization free energy of solvation -20.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds