Wall clock time and date at job start Mon Mar 8 2021 08:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47005 * 2 1 4 4 C 1.50706 * 109.47186 * 119.99534 * 2 1 3 5 5 C 1.33391 * 125.19937 * 65.00289 * 4 2 1 6 6 C 1.38423 * 114.92045 * 179.97438 * 5 4 2 7 7 S 1.76194 * 122.54080 * 180.02562 * 6 5 4 8 8 O 1.42098 * 106.40416 * 203.53657 * 7 6 5 9 9 O 1.42107 * 106.40250 * 336.45883 * 7 6 5 10 10 N 1.65605 * 107.21780 * 89.99495 * 7 6 5 11 11 C 1.46499 * 119.99640 * 65.00345 * 10 7 6 12 12 H 1.08996 * 112.85398 * 344.66531 * 11 10 7 13 13 C 1.53781 * 113.61468 * 115.86531 * 11 10 7 14 14 C 1.54044 * 86.98859 * 89.15694 * 13 11 10 15 15 H 1.08993 * 113.69373 * 270.87012 * 14 13 11 16 16 C 1.50703 * 113.61703 * 139.97896 * 14 13 11 17 17 C 1.38329 * 120.00571 * 142.50952 * 16 14 13 18 18 Cl 1.73598 * 120.01532 * 359.94917 * 17 16 14 19 19 C 1.38376 * 119.97214 * 179.97438 * 17 16 14 20 20 C 1.38193 * 119.99038 * 0.02562 * 19 17 16 21 21 C 1.38258 * 120.00914 * 359.97438 * 20 19 17 22 22 C 1.38228 * 120.02899 * 359.75186 * 21 20 19 23 23 C 1.53781 * 87.07615 * 25.43417 * 14 13 11 24 24 C 1.33390 * 114.91979 * 359.97438 * 6 5 4 25 25 S 1.75878 * 125.20693 * 244.69550 * 4 2 1 26 26 H 0.96699 * 114.00071 * 60.00216 * 1 2 3 27 27 H 1.08992 * 109.47403 * 239.99786 * 2 1 3 28 28 H 1.48500 * 110.00047 * 298.67818 * 3 2 1 29 29 H 1.48503 * 110.00170 * 60.00086 * 3 2 1 30 30 H 1.07995 * 122.54101 * 359.97438 * 5 4 2 31 31 H 0.96993 * 120.00343 * 244.99750 * 10 7 6 32 32 H 1.09002 * 113.61215 * 203.66635 * 13 11 10 33 33 H 1.09003 * 113.61159 * 334.56009 * 13 11 10 34 34 H 1.08000 * 120.00714 * 179.97438 * 19 17 16 35 35 H 1.08001 * 119.99598 * 179.97438 * 20 19 17 36 36 H 1.08001 * 119.98820 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.99249 * 180.27621 * 22 21 20 38 38 H 1.09003 * 113.61003 * 220.02181 * 23 14 13 39 39 H 1.09004 * 113.69377 * 89.13200 * 23 14 13 40 40 H 1.07998 * 125.20163 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2306 5 6 1.7534 -2.0051 1.4975 6 6 2.3064 -2.4359 2.6911 7 16 2.1913 -4.1060 3.2407 8 8 2.3442 -4.0751 4.6531 9 8 1.0557 -4.6640 2.5939 10 7 3.5108 -4.9101 2.6450 11 6 4.8562 -4.5434 3.0940 12 1 4.8854 -3.5782 3.5995 13 6 5.5755 -5.6639 3.8634 14 6 6.1047 -6.1490 2.5005 15 1 5.4461 -6.8610 2.0032 16 6 7.5399 -6.6074 2.5385 17 6 7.9388 -7.6954 1.7832 18 17 6.7863 -8.5341 0.7923 19 6 9.2568 -8.1154 1.8182 20 6 10.1737 -7.4480 2.6080 21 6 9.7743 -6.3606 3.3627 22 6 8.4591 -5.9371 3.3238 23 6 5.9329 -4.7025 2.0076 24 6 2.9338 -1.4911 3.3933 25 16 2.8485 0.0393 2.5307 26 1 -0.3933 0.4417 -0.7651 27 1 1.7924 -0.5138 -0.8899 28 1 1.5879 2.4586 -1.2243 29 1 1.5615 2.4679 1.2085 30 1 1.2185 -2.6671 0.8327 31 1 3.3929 -5.6238 1.9988 32 1 6.3571 -5.3024 4.5318 33 1 4.8970 -6.3676 4.3456 34 1 9.5688 -8.9650 1.2290 35 1 11.2023 -7.7760 2.6357 36 1 10.4912 -5.8391 3.9795 37 1 8.1488 -5.0849 3.9101 38 1 5.5427 -4.6307 0.9923 39 1 6.8114 -4.0777 2.1685 40 1 3.4228 -1.6435 4.3441 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10565096_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:30 Heat of formation + Delta-G solvation = -16.547411 kcal Electronic energy + Delta-G solvation = -28091.684680 eV Core-core repulsion = 23925.692646 eV Total energy + Delta-G solvation = -4165.992034 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.38459 -39.46447 -39.37971 -38.17443 -37.72027 -37.40940 -36.82929 -34.42933 -32.02112 -31.75117 -31.56680 -27.25582 -26.82961 -26.25035 -24.86636 -23.82563 -22.81720 -21.28512 -20.68069 -20.10165 -19.04970 -18.71297 -18.61102 -18.13224 -17.74285 -17.17421 -16.75380 -16.46444 -16.28433 -15.87030 -15.68823 -15.39959 -15.03571 -14.88789 -14.65968 -14.41872 -14.30096 -14.14798 -14.03783 -13.91070 -13.56256 -13.46975 -13.10834 -13.00595 -12.90500 -12.84550 -12.68556 -12.62564 -12.52556 -12.46877 -12.16180 -11.98315 -11.61217 -11.53878 -11.36153 -10.74155 -10.60764 -10.21664 -9.91089 -9.83906 -9.63633 -5.22400 -0.75446 -0.49064 0.11935 0.21002 0.29226 0.56115 0.94921 1.12830 1.16778 1.41690 1.76479 2.00189 2.54927 2.72138 3.10028 3.25927 3.35783 3.47431 3.51634 3.62703 3.73698 3.80310 3.83345 3.92302 3.98387 4.00894 4.15872 4.25220 4.28470 4.30325 4.55682 4.58727 4.63391 4.63744 4.79687 4.85114 4.88243 4.90227 4.96286 5.06561 5.19897 5.24559 5.38554 5.43317 5.75395 5.83428 6.25797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.036 4.036 3 Si 0.647 3.353 4 C -0.182 4.182 5 C -0.042 4.042 6 C -0.684 4.684 7 S 2.709 3.291 8 O -0.949 6.949 9 O -0.950 6.950 10 N -1.096 6.096 11 C 0.128 3.872 12 H 0.103 0.897 13 C -0.143 4.143 14 C -0.083 4.083 15 H 0.107 0.893 16 C -0.061 4.061 17 C -0.034 4.034 18 Cl -0.067 7.067 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.133 4.133 24 C -0.091 4.091 25 S 0.169 5.831 26 H 0.384 0.616 27 H 0.089 0.911 28 H -0.237 1.237 29 H -0.235 1.235 30 H 0.156 0.844 31 H 0.421 0.579 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 3.101 -2.257 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.148 4.148 3 Si 0.545 3.455 4 C -0.300 4.300 5 C -0.071 4.071 6 C -0.784 4.784 7 S 2.796 3.204 8 O -0.939 6.939 9 O -0.940 6.940 10 N -0.855 5.855 11 C 0.020 3.980 12 H 0.121 0.879 13 C -0.182 4.182 14 C -0.101 4.101 15 H 0.125 0.875 16 C -0.062 4.062 17 C -0.060 4.060 18 Cl -0.038 7.038 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.172 4.172 24 C -0.230 4.230 25 S 0.433 5.567 26 H 0.233 0.767 27 H 0.107 0.893 28 H -0.160 1.160 29 H -0.158 1.158 30 H 0.173 0.827 31 H 0.257 0.743 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.987 4.873 -0.894 8.565 hybrid contribution -1.362 -1.409 -1.587 2.522 sum 5.624 3.464 -2.481 7.056 Atomic orbital electron populations 1.86626 1.17158 1.80056 1.50019 1.24038 0.84741 1.10105 0.95894 0.95382 0.91640 0.75140 0.83316 1.23779 1.08101 0.97179 1.00907 1.19577 0.97499 0.95291 0.94755 1.30000 1.15452 1.25948 1.06967 1.01653 0.72254 0.72763 0.73755 1.93620 1.85745 1.86495 1.28012 1.93624 1.47008 1.76719 1.76650 1.55380 1.19547 1.49886 1.60655 1.21603 0.81370 0.98510 0.96543 0.87924 1.23633 1.00224 0.98404 0.95922 1.21762 0.92380 0.97344 0.98600 0.87459 1.19565 0.96030 0.94265 0.96342 1.20876 0.91099 0.96258 0.97789 1.98377 1.59778 1.77155 1.68517 1.21109 0.91264 1.00575 0.99747 1.21170 0.99730 0.95783 0.96303 1.21290 0.96147 0.96720 0.98824 1.21005 0.92732 1.00009 0.98731 1.23435 0.98753 0.95534 0.99512 1.25924 0.98897 0.95911 1.02251 1.84366 1.49695 1.10610 1.12050 0.76720 0.89319 1.15967 1.15841 0.82661 0.74314 0.88284 0.89824 0.84910 0.85040 0.85244 0.84893 0.89939 0.88289 0.79616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.45 12.86 -35.23 -0.45 -0.90 16 2 C -0.04 0.02 2.95 36.01 0.11 0.13 16 3 Si 0.65 -0.97 30.98 -169.99 -5.27 -6.24 16 4 C -0.18 -0.13 5.73 -36.00 -0.21 -0.34 16 5 C -0.04 -0.06 9.59 -41.21 -0.40 -0.45 16 6 C -0.68 -0.43 5.86 -41.21 -0.24 -0.67 16 7 S 2.71 3.53 5.74 -107.50 -0.62 2.91 16 8 O -0.95 -3.57 17.40 -57.17 -0.99 -4.57 16 9 O -0.95 -4.44 17.63 -57.17 -1.01 -5.44 16 10 N -1.10 1.95 5.73 -4.20 -0.02 1.93 16 11 C 0.13 -0.36 4.42 -67.12 -0.30 -0.66 16 12 H 0.10 -0.44 7.90 -51.93 -0.41 -0.85 16 13 C -0.14 0.32 7.27 -25.78 -0.19 0.13 16 14 C -0.08 0.15 3.60 -90.82 -0.33 -0.18 16 15 H 0.11 -0.14 6.56 -51.93 -0.34 -0.48 16 16 C -0.06 0.04 5.29 -104.59 -0.55 -0.51 16 17 C -0.03 -0.02 6.31 -39.50 -0.25 -0.26 16 18 Cl -0.07 -0.05 27.16 -51.86 -1.41 -1.46 16 19 C -0.11 0.02 9.83 -39.55 -0.39 -0.37 16 20 C -0.11 0.13 10.05 -39.59 -0.40 -0.27 16 21 C -0.11 0.18 10.05 -39.58 -0.40 -0.21 16 22 C -0.11 0.18 8.60 -39.59 -0.34 -0.16 16 23 C -0.13 0.44 7.32 -25.92 -0.19 0.25 16 24 C -0.09 0.07 10.54 29.04 0.31 0.37 16 25 S 0.17 -0.12 20.59 -107.50 -2.21 -2.33 16 26 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 27 H 0.09 -0.24 7.96 -51.93 -0.41 -0.66 16 28 H -0.24 0.01 7.11 56.52 0.40 0.41 16 29 H -0.23 -0.34 7.11 56.52 0.40 0.06 16 30 H 0.16 0.16 7.96 -52.49 -0.42 -0.26 16 31 H 0.42 -1.29 8.81 -34.48 -0.30 -1.59 16 32 H 0.10 -0.34 6.33 -51.93 -0.33 -0.67 16 33 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.13 -0.16 8.06 -52.49 -0.42 -0.59 16 35 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 36 H 0.13 -0.45 8.06 -52.49 -0.42 -0.88 16 37 H 0.13 -0.50 6.68 -52.49 -0.35 -0.85 16 38 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 39 H 0.10 -0.41 7.72 -51.93 -0.40 -0.81 16 40 H 0.19 -0.59 8.00 -52.49 -0.42 -1.01 16 LS Contribution 376.86 15.07 5.68 5.68 Total: 0.00 -10.38 376.86 -14.36 -24.75 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: -4.30 Total: -11.12 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.76 Total: -3.21 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -0.02 Total: 1.93 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -2.46 Total: -10.92 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.27 Total: -6.24 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.83 Total: 0.58 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.41 Total: -1.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -10.38 -14.36 -24.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.201 kcal (2) G-P(sol) polarization free energy of solvation -10.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds