Wall clock time and date at job start Mon Mar 8 2021 08:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47005 * 2 1 4 4 C 1.50706 * 109.47186 * 119.99534 * 2 1 3 5 5 C 1.33391 * 125.19937 * 65.00289 * 4 2 1 6 6 C 1.38423 * 114.92045 * 179.97438 * 5 4 2 7 7 S 1.76194 * 122.54080 * 180.02562 * 6 5 4 8 8 O 1.42098 * 106.40416 * 203.53657 * 7 6 5 9 9 O 1.42107 * 106.40250 * 336.45883 * 7 6 5 10 10 N 1.65605 * 107.21780 * 89.99495 * 7 6 5 11 11 C 1.46499 * 119.99640 * 65.00345 * 10 7 6 12 12 H 1.08996 * 112.85398 * 344.66531 * 11 10 7 13 13 C 1.53781 * 113.61468 * 115.86531 * 11 10 7 14 14 C 1.54044 * 86.98859 * 89.15694 * 13 11 10 15 15 H 1.08993 * 113.69373 * 270.87012 * 14 13 11 16 16 C 1.50703 * 113.61703 * 139.97896 * 14 13 11 17 17 C 1.38329 * 120.00571 * 142.50952 * 16 14 13 18 18 Cl 1.73598 * 120.01532 * 359.94917 * 17 16 14 19 19 C 1.38376 * 119.97214 * 179.97438 * 17 16 14 20 20 C 1.38193 * 119.99038 * 0.02562 * 19 17 16 21 21 C 1.38258 * 120.00914 * 359.97438 * 20 19 17 22 22 C 1.38228 * 120.02899 * 359.75186 * 21 20 19 23 23 C 1.53781 * 87.07615 * 25.43417 * 14 13 11 24 24 C 1.33390 * 114.91979 * 359.97438 * 6 5 4 25 25 S 1.75878 * 125.20693 * 244.69550 * 4 2 1 26 26 H 0.96699 * 114.00071 * 60.00216 * 1 2 3 27 27 H 1.08992 * 109.47403 * 239.99786 * 2 1 3 28 28 H 1.48500 * 110.00047 * 298.67818 * 3 2 1 29 29 H 1.48503 * 110.00170 * 60.00086 * 3 2 1 30 30 H 1.07995 * 122.54101 * 359.97438 * 5 4 2 31 31 H 0.96993 * 120.00343 * 244.99750 * 10 7 6 32 32 H 1.09002 * 113.61215 * 203.66635 * 13 11 10 33 33 H 1.09003 * 113.61159 * 334.56009 * 13 11 10 34 34 H 1.08000 * 120.00714 * 179.97438 * 19 17 16 35 35 H 1.08001 * 119.99598 * 179.97438 * 20 19 17 36 36 H 1.08001 * 119.98820 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.99249 * 180.27621 * 22 21 20 38 38 H 1.09003 * 113.61003 * 220.02181 * 23 14 13 39 39 H 1.09004 * 113.69377 * 89.13200 * 23 14 13 40 40 H 1.07998 * 125.20163 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2306 5 6 1.7534 -2.0051 1.4975 6 6 2.3064 -2.4359 2.6911 7 16 2.1913 -4.1060 3.2407 8 8 2.3442 -4.0751 4.6531 9 8 1.0557 -4.6640 2.5939 10 7 3.5108 -4.9101 2.6450 11 6 4.8562 -4.5434 3.0940 12 1 4.8854 -3.5782 3.5995 13 6 5.5755 -5.6639 3.8634 14 6 6.1047 -6.1490 2.5005 15 1 5.4461 -6.8610 2.0032 16 6 7.5399 -6.6074 2.5385 17 6 7.9388 -7.6954 1.7832 18 17 6.7863 -8.5341 0.7923 19 6 9.2568 -8.1154 1.8182 20 6 10.1737 -7.4480 2.6080 21 6 9.7743 -6.3606 3.3627 22 6 8.4591 -5.9371 3.3238 23 6 5.9329 -4.7025 2.0076 24 6 2.9338 -1.4911 3.3933 25 16 2.8485 0.0393 2.5307 26 1 -0.3933 0.4417 -0.7651 27 1 1.7924 -0.5138 -0.8899 28 1 1.5879 2.4586 -1.2243 29 1 1.5615 2.4679 1.2085 30 1 1.2185 -2.6671 0.8327 31 1 3.3929 -5.6238 1.9988 32 1 6.3571 -5.3024 4.5318 33 1 4.8970 -6.3676 4.3456 34 1 9.5688 -8.9650 1.2290 35 1 11.2023 -7.7760 2.6357 36 1 10.4912 -5.8391 3.9795 37 1 8.1488 -5.0849 3.9101 38 1 5.5427 -4.6307 0.9923 39 1 6.8114 -4.0777 2.1685 40 1 3.4228 -1.6435 4.3441 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10565096_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:29 Heat of formation + Delta-G solvation = -17.177761 kcal Electronic energy + Delta-G solvation = -28091.712014 eV Core-core repulsion = 23925.692646 eV Total energy + Delta-G solvation = -4166.019368 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21282 -39.42546 -39.25014 -38.37731 -37.70050 -37.38125 -37.04418 -34.31944 -31.99532 -31.61733 -31.43092 -27.21569 -26.59696 -26.08157 -24.85965 -23.68950 -22.66621 -21.29505 -20.59581 -20.01215 -19.01573 -18.72674 -18.58467 -18.04825 -17.76646 -17.05975 -16.67063 -16.32067 -16.24402 -15.89704 -15.69588 -15.24499 -14.92242 -14.74345 -14.53394 -14.40548 -14.25751 -14.15262 -13.97934 -13.80787 -13.53477 -13.34942 -13.28207 -13.23753 -12.89215 -12.75394 -12.69137 -12.55879 -12.47514 -12.45861 -12.03095 -11.83648 -11.60244 -11.44126 -11.15972 -10.67184 -10.47345 -10.18433 -9.80427 -9.78519 -9.53079 -5.11208 -0.80720 -0.47593 0.23101 0.33963 0.34189 0.59365 0.95125 1.18260 1.21349 1.50385 1.83765 2.02037 2.65099 2.68741 3.17266 3.34120 3.49373 3.65107 3.67950 3.72644 3.91769 3.92206 4.02461 4.09264 4.17900 4.21667 4.24504 4.38251 4.43992 4.45829 4.64276 4.75779 4.77724 4.87463 4.91009 4.97837 5.04393 5.05028 5.09963 5.15554 5.35175 5.43660 5.53938 5.59698 5.92183 5.99601 6.49107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.049 4.049 3 Si 0.722 3.278 4 C -0.198 4.198 5 C -0.058 4.058 6 C -0.692 4.692 7 S 2.727 3.273 8 O -0.976 6.976 9 O -0.991 6.991 10 N -1.087 6.087 11 C 0.122 3.878 12 H 0.123 0.877 13 C -0.144 4.144 14 C -0.088 4.088 15 H 0.096 0.904 16 C -0.068 4.068 17 C -0.054 4.054 18 Cl -0.081 7.081 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.086 4.086 25 S 0.192 5.808 26 H 0.399 0.601 27 H 0.111 0.889 28 H -0.255 1.255 29 H -0.276 1.276 30 H 0.149 0.851 31 H 0.427 0.573 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 4.478 -1.863 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.159 4.159 3 Si 0.623 3.377 4 C -0.315 4.315 5 C -0.087 4.087 6 C -0.793 4.793 7 S 2.815 3.185 8 O -0.966 6.966 9 O -0.981 6.981 10 N -0.848 5.848 11 C 0.015 3.985 12 H 0.141 0.859 13 C -0.183 4.183 14 C -0.106 4.106 15 H 0.115 0.885 16 C -0.069 4.069 17 C -0.080 4.080 18 Cl -0.052 7.052 19 C -0.142 4.142 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.126 4.126 23 C -0.162 4.162 24 C -0.225 4.225 25 S 0.456 5.544 26 H 0.251 0.749 27 H 0.128 0.872 28 H -0.180 1.180 29 H -0.203 1.203 30 H 0.167 0.833 31 H 0.264 0.736 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.554 6.212 -0.519 10.584 hybrid contribution -1.816 -1.797 -1.695 3.066 sum 6.738 4.415 -2.214 8.354 Atomic orbital electron populations 1.86577 1.18146 1.80651 1.51357 1.24342 0.84177 1.11091 0.96333 0.94568 0.90388 0.72857 0.79899 1.24069 1.08356 0.97288 1.01815 1.19647 0.98139 0.95721 0.95224 1.29768 1.16718 1.25504 1.07276 1.00793 0.71946 0.72802 0.72910 1.93579 1.86210 1.87047 1.29734 1.93564 1.49492 1.77835 1.77204 1.55119 1.19396 1.49651 1.60628 1.21824 0.80531 0.99273 0.96900 0.85892 1.23701 1.00447 0.98303 0.95890 1.21782 0.91700 0.98051 0.99085 0.88540 1.19764 0.96766 0.94047 0.96293 1.21087 0.91225 0.97109 0.98629 1.98364 1.60287 1.77543 1.69005 1.21270 0.91440 1.01099 1.00421 1.21429 1.00313 0.95960 0.96096 1.21618 0.96680 0.96424 0.98555 1.21307 0.92533 1.00421 0.98385 1.23427 0.98958 0.94521 0.99312 1.26290 0.97953 0.95516 1.02785 1.84287 1.48850 1.10078 1.11210 0.74921 0.87170 1.17978 1.20275 0.83310 0.73648 0.86638 0.91239 0.84772 0.83566 0.83177 0.82570 0.89909 0.86643 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.10 12.86 -148.98 -1.92 -3.01 16 2 C -0.05 0.08 2.95 71.24 0.21 0.29 16 3 Si 0.72 -2.46 30.98 68.60 2.13 -0.33 16 4 C -0.20 -0.26 5.73 24.59 0.14 -0.11 16 5 C -0.06 -0.18 9.59 21.22 0.20 0.02 16 6 C -0.69 -0.91 5.86 21.22 0.12 -0.79 16 7 S 2.73 9.26 5.74 -56.49 -0.32 8.94 16 8 O -0.98 -7.77 17.40 -128.00 -2.23 -10.00 16 9 O -0.99 -11.03 17.63 -128.00 -2.26 -13.29 16 10 N -1.09 3.49 5.73 -167.20 -0.96 2.54 16 11 C 0.12 -0.79 4.42 45.52 0.20 -0.59 16 12 H 0.12 -1.30 7.90 -2.39 -0.02 -1.32 16 13 C -0.14 0.72 7.27 31.21 0.23 0.95 16 14 C -0.09 0.33 3.60 -10.92 -0.04 0.29 16 15 H 0.10 -0.16 6.56 -2.39 -0.02 -0.18 16 16 C -0.07 0.10 5.29 -19.84 -0.11 0.00 16 17 C -0.05 -0.09 6.31 22.32 0.14 0.05 16 18 Cl -0.08 -0.23 27.16 -2.72 -0.07 -0.31 16 19 C -0.12 -0.03 9.83 22.29 0.22 0.19 16 20 C -0.12 0.33 10.05 22.26 0.22 0.55 16 21 C -0.11 0.53 10.05 22.27 0.22 0.76 16 22 C -0.11 0.52 8.60 22.27 0.19 0.71 16 23 C -0.12 0.94 7.32 31.12 0.23 1.17 16 24 C -0.09 0.21 10.54 66.72 0.70 0.92 16 25 S 0.19 -0.44 20.59 -56.49 -1.16 -1.60 16 26 H 0.40 -2.67 8.74 -74.06 -0.65 -3.32 16 27 H 0.11 -0.69 7.96 -2.39 -0.02 -0.71 16 28 H -0.26 0.13 7.11 99.48 0.71 0.83 16 29 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 30 H 0.15 0.54 7.96 -2.91 -0.02 0.51 16 31 H 0.43 -2.19 8.81 -96.75 -0.85 -3.05 16 32 H 0.12 -0.99 6.33 -2.39 -0.02 -1.00 16 33 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 35 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 36 H 0.15 -1.38 8.06 -2.91 -0.02 -1.41 16 37 H 0.16 -1.58 6.68 -2.91 -0.02 -1.60 16 38 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.12 -1.23 7.72 -2.39 -0.02 -1.25 16 40 H 0.21 -1.72 8.00 -2.91 -0.02 -1.75 16 Total: 0.00 -24.82 376.86 -4.25 -29.07 By element: Atomic # 1 Polarization: -16.06 SS G_CDS: -0.35 Total: -16.41 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 2.89 Total: 4.40 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -0.96 Total: 2.54 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -6.40 Total: -26.30 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.13 Total: -0.33 kcal Atomic # 16 Polarization: 8.83 SS G_CDS: -1.49 Total: 7.34 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.07 Total: -0.31 kcal Total: -24.82 -4.25 -29.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.894 kcal (2) G-P(sol) polarization free energy of solvation -24.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds