Wall clock time and date at job start Mon Mar 8 2021 08:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33382 * 125.20148 * 2 1 4 4 C 1.50704 * 122.53984 * 0.02605 * 3 2 1 5 5 O 1.42899 * 109.47089 * 75.76858 * 4 3 2 6 6 Si 1.86297 * 109.47247 * 315.76571 * 4 3 2 7 7 C 1.38425 * 114.92081 * 180.29101 * 3 2 1 8 8 S 1.76198 * 122.54102 * 179.72942 * 7 3 2 9 9 O 1.42103 * 106.40063 * 23.86698 * 8 7 3 10 10 O 1.42101 * 106.40400 * 156.78183 * 8 7 3 11 11 N 1.65590 * 107.22115 * 270.32881 * 8 7 3 12 12 C 1.46506 * 120.00244 * 63.67541 * 11 8 7 13 13 H 1.08996 * 112.84757 * 14.44392 * 12 11 8 14 14 C 1.53782 * 113.61414 * 145.64004 * 12 11 8 15 15 C 1.53782 * 87.07998 * 89.11485 * 14 12 11 16 16 H 1.09000 * 113.61886 * 270.88212 * 15 14 12 17 17 C 1.50707 * 113.61133 * 140.06207 * 15 14 12 18 18 C 1.38327 * 120.00372 * 120.00244 * 17 15 14 19 19 Cl 1.73597 * 120.01409 * 359.95168 * 18 17 15 20 20 C 1.38377 * 119.97055 * 179.97438 * 18 17 15 21 21 C 1.38184 * 119.98694 * 0.02562 * 20 18 17 22 22 C 1.38262 * 120.01815 * 359.97438 * 21 20 18 23 23 C 1.38228 * 120.02234 * 359.74814 * 22 21 20 24 24 C 1.53784 * 113.61436 * 243.13895 * 12 11 8 25 25 C 1.33383 * 114.91974 * 359.49722 * 7 3 2 26 26 C 1.50702 * 125.20533 * 180.20798 * 25 7 3 27 27 S 1.75886 * 125.20308 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47009 * 84.53513 * 1 2 3 29 29 H 1.09003 * 109.46640 * 204.53164 * 1 2 3 30 30 H 1.08998 * 109.47273 * 324.52931 * 1 2 3 31 31 H 1.09000 * 109.46866 * 195.76683 * 4 3 2 32 32 H 0.96706 * 114.00101 * 299.99983 * 5 4 3 33 33 H 1.48494 * 110.00077 * 174.83628 * 6 4 3 34 34 H 1.48503 * 110.00050 * 296.15642 * 6 4 3 35 35 H 0.97005 * 120.00180 * 243.67605 * 11 8 7 36 36 H 1.09004 * 113.61013 * 203.66178 * 14 12 11 37 37 H 1.08997 * 113.61289 * 334.48325 * 14 12 11 38 38 H 1.08000 * 120.00420 * 179.97438 * 20 18 17 39 39 H 1.08003 * 119.99121 * 179.97438 * 21 20 18 40 40 H 1.07996 * 119.99172 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.99380 * 180.27468 * 23 22 21 42 42 H 1.09000 * 113.61433 * 25.42791 * 24 12 11 43 43 H 1.08993 * 113.61493 * 156.33518 * 24 12 11 44 44 H 1.09007 * 109.47466 * 184.24363 * 26 25 7 45 45 H 1.08995 * 109.46985 * 304.24551 * 26 25 7 46 46 H 1.09005 * 109.47101 * 64.24324 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4847 0.0006 5 8 1.2186 2.7997 1.3068 6 14 0.3047 2.5830 -1.2241 7 6 3.6379 0.8429 -0.0064 8 16 4.8355 2.1352 -0.0146 9 8 4.1966 3.2778 0.5382 10 8 6.0299 1.5790 0.5178 11 7 5.1542 2.4983 -1.5985 12 6 4.0943 3.0380 -2.4539 13 1 3.2306 3.3873 -1.8882 14 6 4.5991 4.0506 -3.4954 15 6 4.8217 2.8540 -4.4353 16 1 5.8091 2.4021 -4.3406 17 6 4.4399 3.1314 -5.8665 18 6 5.3896 3.0328 -6.8674 19 17 7.0219 2.5907 -6.4750 20 6 5.0382 3.2871 -8.1814 21 6 3.7389 3.6399 -8.4929 22 6 2.7900 3.7383 -7.4921 23 6 3.1391 3.4788 -6.1801 24 6 3.7304 2.1232 -3.6352 25 6 3.9751 -0.4476 -0.0009 26 6 5.3861 -0.9770 -0.0015 27 16 2.5210 -1.4372 -0.0006 28 1 -0.3633 0.0979 -1.0230 29 1 -0.3633 -0.9349 0.4267 30 1 -0.3634 0.8369 0.5963 31 1 2.4827 3.1956 -0.2788 32 1 0.5226 2.2064 1.6210 33 1 -0.3471 3.9149 -1.1444 34 1 0.8149 2.3487 -2.5989 35 1 6.0427 2.3536 -1.9600 36 1 3.8298 4.7408 -3.8419 37 1 5.5200 4.5552 -3.2032 38 1 5.7793 3.2107 -8.9632 39 1 3.4646 3.8388 -9.5184 40 1 1.7747 4.0137 -7.7361 41 1 2.3965 3.5515 -5.3993 42 1 3.9509 1.0708 -3.4566 43 1 2.7238 2.2865 -4.0199 44 1 5.3661 -2.0646 -0.0723 45 1 5.9274 -0.5673 -0.8541 46 1 5.8852 -0.6821 0.9216 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10565096_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:33 Heat of formation + Delta-G solvation = -15.540079 kcal Electronic energy + Delta-G solvation = -34216.675556 eV Core-core repulsion = 29739.651966 eV Total energy + Delta-G solvation = -4477.023591 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.056 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.40340 -40.33432 -39.39274 -38.64473 -37.45157 -37.17456 -37.13628 -34.48357 -34.23162 -31.70877 -31.56049 -30.87156 -28.10875 -26.83814 -26.26506 -25.83757 -23.79631 -23.23300 -22.80051 -21.09379 -20.52532 -20.04314 -19.19661 -18.66068 -18.15835 -17.92921 -17.33359 -16.94471 -16.73623 -16.44917 -16.13514 -15.98658 -15.77137 -15.51880 -15.14361 -15.02017 -14.84557 -14.61383 -14.52912 -14.40887 -14.18771 -14.03739 -13.98657 -13.66261 -13.60120 -13.47486 -13.40840 -13.36342 -13.07667 -12.85567 -12.71557 -12.64901 -12.63834 -12.55097 -12.19175 -12.12269 -11.98588 -11.73307 -11.65403 -11.54101 -11.31460 -10.66190 -10.47395 -9.94713 -9.88227 -9.62404 -9.45839 -4.95906 -0.88511 -0.43836 0.14364 0.24584 0.42118 0.69881 0.83355 1.13568 1.26604 1.60168 1.88816 1.95300 2.54372 2.58967 3.11051 3.28715 3.42920 3.47904 3.51886 3.56498 3.75943 3.78884 3.86579 3.94569 4.01729 4.04254 4.08657 4.17958 4.25129 4.33068 4.36663 4.49139 4.54608 4.63742 4.63946 4.69289 4.70251 4.72067 4.81540 4.87943 4.91553 4.93117 4.95921 5.02947 5.07810 5.24571 5.26522 5.30954 5.44154 5.47046 5.82495 5.86096 6.75445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.180 4.180 3 C -0.089 4.089 4 C -0.098 4.098 5 O -0.545 6.545 6 Si 0.729 3.271 7 C -0.690 4.690 8 S 2.707 3.293 9 O -0.975 6.975 10 O -0.976 6.976 11 N -1.088 6.088 12 C 0.113 3.887 13 H 0.095 0.905 14 C -0.131 4.131 15 C -0.077 4.077 16 H 0.107 0.893 17 C -0.069 4.069 18 C -0.049 4.049 19 Cl -0.076 7.076 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.141 4.141 25 C -0.062 4.062 26 C -0.118 4.118 27 S 0.199 5.801 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.385 0.615 33 H -0.284 1.284 34 H -0.243 1.243 35 H 0.429 0.571 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 -5.460 -5.315 10.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.298 4.298 3 C -0.099 4.099 4 C -0.208 4.208 5 O -0.353 6.353 6 Si 0.629 3.371 7 C -0.792 4.792 8 S 2.798 3.202 9 O -0.965 6.965 10 O -0.966 6.966 11 N -0.849 5.849 12 C 0.006 3.994 13 H 0.113 0.887 14 C -0.170 4.170 15 C -0.095 4.095 16 H 0.125 0.875 17 C -0.070 4.070 18 C -0.076 4.076 19 Cl -0.048 7.048 20 C -0.139 4.139 21 C -0.134 4.134 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.180 4.180 25 C -0.183 4.183 26 C -0.177 4.177 27 S 0.465 5.535 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.234 0.766 33 H -0.211 1.211 34 H -0.167 1.167 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.705 -5.787 -5.200 10.271 hybrid contribution 1.563 1.225 0.027 1.986 sum -5.142 -4.562 -5.173 8.603 Atomic orbital electron populations 1.20649 0.84733 1.05387 1.05464 1.24766 1.01894 0.94540 1.08594 1.18563 0.90495 0.97093 1.03789 1.25840 1.07454 0.93110 0.94379 1.86629 1.58991 1.57663 1.31973 0.94356 0.82028 0.84112 0.76619 1.29230 1.12005 1.13104 1.24907 1.01242 0.72830 0.73604 0.72550 1.93567 1.76826 1.49530 1.76556 1.93562 1.46072 1.79871 1.77121 1.55112 1.20311 1.79629 1.29814 1.21835 0.89712 0.96311 0.91577 0.88724 1.23446 1.03344 0.96169 0.94030 1.21650 1.00634 0.98099 0.89146 0.87541 1.19671 0.93131 0.99727 0.94496 1.21036 0.86075 1.05353 0.95134 1.98366 1.20598 1.91426 1.94369 1.21304 0.98123 0.99821 0.94606 1.21447 0.92048 0.98723 1.01136 1.21592 1.00952 0.98147 0.92492 1.21228 0.95034 0.99209 0.97670 1.23651 0.99712 1.00145 0.94446 1.24763 1.01967 0.95105 0.96506 1.20984 0.87922 1.03266 1.05496 1.84255 0.93629 1.07322 1.68251 0.86753 0.87295 0.88058 0.86861 0.76594 1.21068 1.16738 0.73344 0.87470 0.89761 0.84307 0.83194 0.83243 0.83781 0.89552 0.87554 0.88147 0.88560 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.18 8.22 71.24 0.59 1.77 16 2 C -0.18 0.60 6.11 24.59 0.15 0.75 16 3 C -0.09 -0.19 4.69 -20.92 -0.10 -0.29 16 4 C -0.10 -0.40 1.92 71.24 0.14 -0.27 16 5 O -0.55 -3.38 12.88 -148.98 -1.92 -5.30 16 6 Si 0.73 -1.62 26.80 68.60 1.84 0.22 16 7 C -0.69 -2.90 5.84 21.22 0.12 -2.78 16 8 S 2.71 19.93 5.41 -56.49 -0.31 19.62 16 9 O -0.98 -13.93 14.39 -128.00 -1.84 -15.77 16 10 O -0.98 -10.62 15.18 -128.00 -1.94 -12.56 16 11 N -1.09 -0.79 5.73 -167.18 -0.96 -1.75 16 12 C 0.11 -0.04 4.49 45.52 0.20 0.16 16 13 H 0.09 0.08 4.82 -2.39 -0.01 0.07 16 14 C -0.13 0.21 7.33 31.12 0.23 0.44 16 15 C -0.08 0.12 3.59 -11.01 -0.04 0.08 16 16 H 0.11 -0.14 6.54 -2.39 -0.02 -0.15 16 17 C -0.07 0.00 5.29 -19.84 -0.10 -0.11 16 18 C -0.05 -0.10 6.31 22.32 0.14 0.04 16 19 Cl -0.08 -0.21 27.16 -2.72 -0.07 -0.28 16 20 C -0.12 -0.03 9.83 22.29 0.22 0.19 16 21 C -0.12 0.27 10.04 22.26 0.22 0.50 16 22 C -0.11 0.37 10.05 22.27 0.22 0.59 16 23 C -0.11 0.25 8.63 22.27 0.19 0.45 16 24 C -0.14 0.41 7.26 31.12 0.23 0.64 16 25 C -0.06 -0.08 6.49 24.59 0.16 0.08 16 26 C -0.12 0.09 8.68 71.24 0.62 0.71 16 27 S 0.20 -0.64 23.31 -56.49 -1.32 -1.96 16 28 H 0.11 -1.69 6.41 -2.39 -0.02 -1.71 16 29 H 0.11 -1.54 8.14 -2.39 -0.02 -1.56 16 30 H 0.10 -1.42 4.90 -2.39 -0.01 -1.43 16 31 H 0.11 0.93 2.86 -2.39 -0.01 0.92 16 32 H 0.38 -1.50 7.14 -74.05 -0.53 -2.03 16 33 H -0.28 -1.36 7.11 99.48 0.71 -0.65 16 34 H -0.24 0.58 7.03 99.48 0.70 1.28 16 35 H 0.43 -1.31 8.79 -96.74 -0.85 -2.16 16 36 H 0.11 -0.36 7.73 -2.38 -0.02 -0.38 16 37 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 39 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.15 -1.15 8.06 -2.91 -0.02 -1.17 16 41 H 0.14 -0.82 6.65 -2.91 -0.02 -0.84 16 42 H 0.09 -0.31 8.14 -2.39 -0.02 -0.32 16 43 H 0.11 -0.49 6.23 -2.39 -0.01 -0.50 16 44 H 0.10 -0.54 8.14 -2.38 -0.02 -0.55 16 45 H 0.10 -0.24 7.98 -2.39 -0.02 -0.26 16 46 H 0.10 0.22 7.18 -2.38 -0.02 0.20 16 Total: 0.00 -23.87 393.76 -3.60 -27.47 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: -0.27 Total: -12.66 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 3.19 Total: 2.96 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -0.96 Total: -1.75 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -5.70 Total: -33.63 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: 1.84 Total: 0.22 kcal Atomic # 16 Polarization: 19.29 SS G_CDS: -1.62 Total: 17.67 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.07 Total: -0.28 kcal Total: -23.87 -3.60 -27.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.935 kcal (2) G-P(sol) polarization free energy of solvation -23.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds