Wall clock time and date at job start Mon Mar 8 2021 08:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.47007 * 2 1 4 4 C 1.50695 * 109.47428 * 239.99699 * 2 1 3 5 5 C 1.38211 * 120.00224 * 282.40452 * 4 2 1 6 6 S 1.76202 * 119.99883 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40324 * 315.55370 * 6 5 4 8 8 O 1.42100 * 106.40108 * 182.63215 * 6 5 4 9 9 N 1.65602 * 107.21572 * 69.09365 * 6 5 4 10 10 C 1.46503 * 120.00054 * 63.26922 * 9 6 5 11 11 H 1.09004 * 112.85093 * 347.11583 * 10 9 6 12 12 C 1.53786 * 113.61293 * 118.30592 * 10 9 6 13 13 C 1.54060 * 86.98017 * 89.16354 * 12 10 9 14 14 H 1.08998 * 113.61012 * 270.88173 * 13 12 10 15 15 C 1.50703 * 113.69293 * 139.99057 * 13 12 10 16 16 C 1.38332 * 120.00494 * 142.46233 * 15 13 12 17 17 Cl 1.73597 * 120.01373 * 0.02562 * 16 15 13 18 18 C 1.38374 * 119.96983 * 179.97438 * 16 15 13 19 19 C 1.38191 * 119.99096 * 0.02562 * 18 16 15 20 20 C 1.38271 * 120.00949 * 0.02562 * 19 18 16 21 21 C 1.38217 * 120.02513 * 359.70713 * 20 19 18 22 22 C 1.53781 * 87.07868 * 25.43384 * 13 12 10 23 23 C 1.38264 * 120.00225 * 180.27658 * 5 4 2 24 24 C 1.38221 * 119.99504 * 359.46430 * 23 5 4 25 25 C 1.38253 * 120.00294 * 0.53501 * 24 23 5 26 26 C 1.38222 * 119.99689 * 359.74311 * 25 24 23 27 27 H 0.96705 * 114.00049 * 185.13874 * 1 2 3 28 28 H 1.09004 * 109.46995 * 119.99992 * 2 1 3 29 29 H 1.48494 * 109.99974 * 58.67973 * 3 2 1 30 30 H 1.48500 * 109.99967 * 179.97438 * 3 2 1 31 31 H 0.96999 * 120.00070 * 243.27173 * 9 6 5 32 32 H 1.08994 * 113.61225 * 203.66503 * 12 10 9 33 33 H 1.08998 * 113.61290 * 334.57412 * 12 10 9 34 34 H 1.08003 * 120.00470 * 179.97438 * 18 16 15 35 35 H 1.07996 * 120.00105 * 179.97438 * 19 18 16 36 36 H 1.07996 * 119.98352 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.99048 * 180.29833 * 21 20 19 38 38 H 1.08997 * 113.60829 * 220.02477 * 22 13 12 39 39 H 1.08996 * 113.69372 * 89.12674 * 22 13 12 40 40 H 1.07993 * 120.00196 * 179.72624 * 23 5 4 41 41 H 1.07997 * 119.99746 * 180.29809 * 24 23 5 42 42 H 1.07992 * 120.00450 * 179.76905 * 25 24 23 43 43 H 1.08000 * 119.99970 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.9194 -2.0914 -1.2843 6 16 1.3172 -3.0214 0.0858 7 8 1.8770 -2.4291 1.2499 8 8 1.4928 -4.3908 -0.2505 9 7 -0.3168 -2.7666 0.1710 10 6 -1.1841 -3.2007 -0.9270 11 1 -0.6278 -3.4685 -1.8253 12 6 -2.2251 -4.2532 -0.5104 13 6 -3.1583 -3.0762 -0.1679 14 1 -3.0527 -2.7192 0.8565 15 6 -4.5944 -3.3074 -0.5620 16 6 -5.6167 -2.8521 0.2512 17 17 -5.2459 -2.0138 1.7254 18 6 -6.9351 -3.0644 -0.1116 19 6 -7.2297 -3.7313 -1.2855 20 6 -6.2073 -4.1870 -2.0973 21 6 -4.8903 -3.9705 -1.7382 22 6 -2.3635 -2.2503 -1.1932 23 6 2.3856 -2.7434 -2.4109 24 6 2.8535 -2.0137 -3.4876 25 6 2.8655 -0.6323 -3.4337 26 6 2.4047 0.0193 -2.3051 27 1 -0.3933 -0.8799 0.0791 28 1 1.7923 -0.5139 0.8900 29 1 1.5354 2.4771 1.1920 30 1 3.5349 1.7702 0.0006 31 1 -0.6997 -2.3298 0.9479 32 1 -2.5815 -4.8663 -1.3382 33 1 -1.9272 -4.8427 0.3566 34 1 -7.7337 -2.7095 0.5230 35 1 -8.2586 -3.8974 -1.5686 36 1 -6.4381 -4.7085 -3.0144 37 1 -4.0922 -4.3224 -2.3751 38 1 -2.1772 -1.2241 -0.8768 39 1 -2.7566 -2.3159 -2.2077 40 1 2.3804 -3.8226 -2.4513 41 1 3.2132 -2.5229 -4.3695 42 1 3.2344 -0.0623 -4.2734 43 1 2.4137 1.0984 -2.2631 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10565096_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:38 Heat of formation + Delta-G solvation = -13.472281 kcal Electronic energy + Delta-G solvation = -31036.457223 eV Core-core repulsion = 26781.446291 eV Total energy + Delta-G solvation = -4255.010933 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35695 -40.74314 -39.39060 -38.87326 -37.59162 -37.40381 -37.27043 -34.53719 -32.86823 -32.44078 -31.64424 -31.53435 -27.07797 -26.65430 -26.18966 -24.45581 -23.73988 -23.00506 -22.63886 -21.13519 -20.32647 -19.64142 -19.03769 -18.10835 -18.01423 -17.44283 -17.17267 -16.82803 -16.51924 -16.37823 -16.03567 -15.89087 -15.44103 -15.30322 -15.03997 -14.95603 -14.78024 -14.59221 -14.47693 -13.94456 -13.82040 -13.71688 -13.60528 -13.46830 -13.38448 -13.35592 -12.85225 -12.80163 -12.62787 -12.53240 -12.33220 -12.12712 -12.08418 -11.83358 -11.54752 -11.47146 -11.25752 -11.20974 -10.64845 -10.51203 -10.05815 -9.81454 -9.56187 -5.00129 -0.98277 -0.37606 0.12636 0.20414 0.31435 1.18880 1.22220 1.53355 1.65800 1.89688 2.24423 2.49762 2.65674 3.05967 3.31177 3.38132 3.49838 3.58945 3.63132 3.74678 3.83196 3.91129 3.95356 3.98673 4.13719 4.14947 4.15657 4.26679 4.36915 4.40656 4.42767 4.56158 4.64042 4.74480 4.78000 4.80419 4.88194 4.95659 4.99235 5.03372 5.07760 5.18054 5.28664 5.32207 5.34519 5.50166 5.52308 5.67913 5.74373 5.89654 6.24911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.164 4.164 3 Si 0.830 3.170 4 C -0.024 4.024 5 C -0.681 4.681 6 S 2.695 3.305 7 O -0.987 6.987 8 O -0.970 6.970 9 N -1.094 6.094 10 C 0.119 3.881 11 H 0.124 0.876 12 C -0.139 4.139 13 C -0.087 4.087 14 H 0.098 0.902 15 C -0.068 4.068 16 C -0.053 4.053 17 Cl -0.081 7.081 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.030 4.030 24 C -0.135 4.135 25 C -0.047 4.047 26 C -0.137 4.137 27 H 0.359 0.641 28 H 0.101 0.899 29 H -0.291 1.291 30 H -0.264 1.264 31 H 0.426 0.574 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.172 0.828 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 0.757 -9.729 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.270 4.270 3 Si 0.730 3.270 4 C -0.025 4.025 5 C -0.771 4.771 6 S 2.789 3.211 7 O -0.977 6.977 8 O -0.960 6.960 9 N -0.860 5.860 10 C 0.012 3.988 11 H 0.142 0.858 12 C -0.178 4.178 13 C -0.105 4.105 14 H 0.116 0.884 15 C -0.068 4.068 16 C -0.080 4.080 17 Cl -0.052 7.052 18 C -0.142 4.142 19 C -0.137 4.137 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.166 4.166 23 C -0.049 4.049 24 C -0.153 4.153 25 C -0.065 4.065 26 C -0.155 4.155 27 H 0.215 0.785 28 H 0.118 0.882 29 H -0.218 1.218 30 H -0.189 1.189 31 H 0.265 0.735 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.170 0.830 41 H 0.182 0.818 42 H 0.189 0.811 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.123 1.403 -8.787 8.969 hybrid contribution -0.418 -1.004 1.414 1.784 sum -1.542 0.398 -7.373 7.543 Atomic orbital electron populations 1.86842 1.16030 1.35610 1.96731 1.26624 0.85779 1.17738 0.96878 0.92335 0.76520 0.72306 0.85850 1.20008 0.94394 0.91878 0.96264 1.30380 1.21030 1.06239 1.19415 1.01602 0.72552 0.73467 0.73490 1.93534 1.76988 1.78516 1.48631 1.93568 1.85160 1.32466 1.84823 1.55510 1.24906 1.75490 1.30086 1.21912 0.91569 0.96743 0.88558 0.85819 1.23659 0.94608 0.96111 1.03421 1.21785 0.89348 0.98727 1.00681 0.88427 1.19706 0.94312 0.98172 0.94650 1.21083 0.95172 1.01624 0.90085 1.98367 1.94856 1.76920 1.35065 1.21273 0.94661 0.99919 0.98329 1.21438 1.01152 0.97436 0.93653 1.21615 0.92486 0.98715 1.00429 1.21295 0.97827 0.98008 0.95506 1.23508 0.93605 0.98683 1.00798 1.21265 0.91610 1.01310 0.90730 1.21773 0.99529 0.94733 0.99301 1.21994 0.91943 0.94984 0.97600 1.21497 0.99745 1.01081 0.93159 0.78487 0.88215 1.21805 1.18938 0.73462 0.86403 0.90832 0.84717 0.83488 0.83149 0.82643 0.89910 0.86383 0.83020 0.81827 0.81065 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.96 12.61 -148.98 -1.88 -3.83 16 2 C -0.16 -0.75 2.07 71.23 0.15 -0.60 16 3 Si 0.83 1.11 30.22 68.60 2.07 3.18 16 4 C -0.02 -0.05 5.25 -19.87 -0.10 -0.16 16 5 C -0.68 -1.67 5.86 22.27 0.13 -1.54 16 6 S 2.70 13.12 5.01 -56.49 -0.28 12.84 16 7 O -0.99 -11.16 15.17 -128.00 -1.94 -13.11 16 8 O -0.97 -8.69 16.77 -128.00 -2.15 -10.84 16 9 N -1.09 1.59 3.39 -167.17 -0.57 1.03 16 10 C 0.12 -0.59 4.39 45.52 0.20 -0.39 16 11 H 0.12 -0.98 8.05 -2.38 -0.02 -1.00 16 12 C -0.14 0.63 7.27 31.22 0.23 0.86 16 13 C -0.09 0.26 3.58 -10.92 -0.04 0.22 16 14 H 0.10 -0.11 6.52 -2.39 -0.02 -0.13 16 15 C -0.07 0.06 5.29 -19.84 -0.11 -0.04 16 16 C -0.05 -0.12 6.31 22.32 0.14 0.02 16 17 Cl -0.08 -0.30 27.16 -2.72 -0.07 -0.37 16 18 C -0.12 -0.09 9.83 22.29 0.22 0.13 16 19 C -0.12 0.28 10.05 22.27 0.22 0.50 16 20 C -0.11 0.48 10.05 22.27 0.22 0.70 16 21 C -0.11 0.45 8.61 22.26 0.19 0.64 16 22 C -0.13 0.75 7.21 31.12 0.22 0.97 16 23 C -0.03 0.03 9.55 22.27 0.21 0.24 16 24 C -0.13 0.70 10.05 22.27 0.22 0.92 16 25 C -0.05 0.30 10.05 22.27 0.22 0.52 16 26 C -0.14 0.38 8.66 22.27 0.19 0.57 16 27 H 0.36 -0.02 3.22 -74.05 -0.24 -0.26 16 28 H 0.10 0.80 5.05 -2.38 -0.01 0.79 16 29 H -0.29 -2.29 7.11 99.48 0.71 -1.59 16 30 H -0.26 -0.97 7.11 99.48 0.71 -0.27 16 31 H 0.43 -1.48 7.70 -96.74 -0.74 -2.23 16 32 H 0.12 -0.95 6.34 -2.39 -0.02 -0.97 16 33 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 35 H 0.15 -0.91 8.06 -2.91 -0.02 -0.94 16 36 H 0.15 -1.31 8.06 -2.91 -0.02 -1.34 16 37 H 0.16 -1.46 6.68 -2.91 -0.02 -1.48 16 38 H 0.08 -0.38 6.98 -2.39 -0.02 -0.40 16 39 H 0.12 -1.04 7.72 -2.39 -0.02 -1.06 16 40 H 0.15 -0.40 7.34 -2.91 -0.02 -0.42 16 41 H 0.16 -1.75 8.06 -2.91 -0.02 -1.77 16 42 H 0.17 -2.22 8.06 -2.91 -0.02 -2.25 16 43 H 0.16 -1.29 5.22 -2.91 -0.02 -1.31 16 Total: 0.00 -22.30 367.86 -2.14 -24.45 By element: Atomic # 1 Polarization: -17.04 SS G_CDS: 0.14 Total: -16.90 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 2.53 Total: 3.56 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -0.57 Total: 1.03 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -5.97 Total: -27.78 kcal Atomic # 14 Polarization: 1.11 SS G_CDS: 2.07 Total: 3.18 kcal Atomic # 16 Polarization: 13.12 SS G_CDS: -0.28 Total: 12.84 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.07 Total: -0.37 kcal Total: -22.30 -2.14 -24.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10565096_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.975 kcal (2) G-P(sol) polarization free energy of solvation -22.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds