Wall clock time and date at job start Mon Mar 8 2021 09:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00503 * 2 1 4 4 C 1.38714 * 120.05549 * 180.22840 * 3 2 1 5 5 C 1.38167 * 119.94082 * 180.31168 * 4 3 2 6 6 C 1.50694 * 119.97204 * 179.70751 * 5 4 3 7 7 H 1.09004 * 112.85084 * 10.91945 * 6 5 4 8 8 C 1.54057 * 113.62297 * 142.23160 * 6 5 4 9 9 C 1.53781 * 86.98470 * 139.97739 * 8 6 5 10 10 H 1.09003 * 113.60885 * 219.97892 * 9 8 6 11 11 N 1.46503 * 113.61237 * 89.16595 * 9 8 6 12 12 S 1.65598 * 119.99686 * 145.00560 * 11 9 8 13 13 O 1.42096 * 106.40411 * 309.46611 * 12 11 9 14 14 O 1.42103 * 106.40023 * 176.54720 * 12 11 9 15 15 C 1.76199 * 107.22078 * 63.00661 * 12 11 9 16 16 C 1.33393 * 122.54114 * 67.11465 * 15 12 11 17 17 C 1.50700 * 125.20221 * 359.97438 * 16 15 12 18 18 O 1.42899 * 109.47163 * 314.26750 * 17 16 15 19 19 Si 1.86299 * 109.47222 * 194.26675 * 17 16 15 20 20 S 1.75879 * 109.59648 * 180.02562 * 16 15 12 21 21 C 1.75883 * 90.96977 * 359.97438 * 20 16 15 22 22 C 1.33389 * 109.59632 * 0.02562 * 21 20 16 23 23 C 1.53777 * 87.17518 * 334.57236 * 9 8 6 24 24 C 1.38248 * 120.05358 * 359.42903 * 5 4 3 25 25 C 1.38279 * 120.11298 * 0.29892 * 24 5 4 26 26 C 1.38120 * 120.05831 * 359.97438 * 25 24 5 27 27 H 1.08999 * 109.47907 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47225 * 300.00759 * 1 2 3 29 29 H 1.08999 * 109.46921 * 60.00279 * 1 2 3 30 30 H 1.07996 * 120.03028 * 0.02562 * 4 3 2 31 31 H 1.09000 * 113.60681 * 25.47121 * 8 6 5 32 32 H 1.09000 * 113.69331 * 254.49191 * 8 6 5 33 33 H 0.96997 * 119.99572 * 324.99874 * 11 9 8 34 34 H 1.09001 * 109.47043 * 74.26425 * 17 16 15 35 35 H 0.96696 * 114.00535 * 179.97438 * 18 17 16 36 36 H 1.48490 * 109.99990 * 298.68018 * 19 17 16 37 37 H 1.48504 * 109.99694 * 59.99988 * 19 17 16 38 38 H 1.08000 * 125.20485 * 180.26314 * 21 20 16 39 39 H 1.08000 * 122.54320 * 180.02562 * 22 21 20 40 40 H 1.09002 * 113.61633 * 140.02218 * 23 9 8 41 41 H 1.09004 * 113.61364 * 270.84267 * 23 9 8 42 42 H 1.08002 * 119.93721 * 180.27112 * 24 5 4 43 43 H 1.08007 * 119.97310 * 179.97438 * 25 24 5 44 44 H 1.08004 * 120.03148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4312 1.2846 -0.0048 5 6 4.0561 2.5169 0.0017 6 6 5.5609 2.5979 0.0032 7 1 6.0367 1.6367 -0.1915 8 6 6.1180 3.7494 -0.8552 9 6 7.1514 3.9736 0.2613 10 1 7.3480 5.0254 0.4694 11 7 8.3766 3.1882 0.0932 12 16 9.8356 3.8208 0.5553 13 8 9.9216 5.1080 -0.0405 14 8 10.8010 2.8000 0.3429 15 6 9.7628 4.0824 2.2963 16 6 9.6888 3.0774 3.1704 17 6 9.6567 1.6142 2.8111 18 8 8.7331 1.4067 1.7406 19 14 9.1212 0.6222 4.2943 20 16 9.6328 3.7212 4.8061 21 6 9.7164 5.3676 4.1930 22 6 9.7781 5.3463 2.8607 23 6 6.1370 3.3343 1.2242 24 6 3.3021 3.6756 0.0011 25 6 1.9211 3.6047 0.0002 26 6 1.2916 2.3753 -0.0006 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0207 0.3797 -0.0089 31 1 5.4213 4.5786 -0.9783 32 1 6.5572 3.4208 -1.7971 33 1 8.3332 2.2976 -0.2886 34 1 10.6512 1.2946 2.5000 35 1 8.6610 0.4853 1.4563 36 1 10.0909 0.8044 5.4041 37 1 7.7665 1.0485 4.7283 38 1 9.7213 6.2594 4.8022 39 1 9.8363 6.2467 2.2672 40 1 6.5916 2.6707 1.9598 41 1 5.4465 4.0505 1.6696 42 1 3.7926 4.6379 0.0018 43 1 1.3342 4.5114 0.0001 44 1 0.2129 2.3204 -0.0009 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10812634_14772022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:52:48 Heat of formation + Delta-G solvation = -37.547287 kcal Electronic energy + Delta-G solvation = -31454.077129 eV Core-core repulsion = 27172.754453 eV Total energy + Delta-G solvation = -4281.322675 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.079 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.39812 -40.26380 -39.52131 -38.21146 -37.99294 -37.41120 -36.65784 -33.98293 -31.99709 -31.93566 -30.72626 -28.28440 -27.49997 -26.61074 -25.86875 -24.28018 -23.53138 -22.38932 -21.76025 -20.51209 -19.93734 -19.05884 -18.69242 -18.53099 -18.14389 -17.76142 -17.20127 -16.89565 -16.79213 -16.65500 -16.12828 -16.00363 -15.79463 -15.36572 -15.11705 -14.96834 -14.53400 -14.46341 -14.35078 -14.22014 -14.13212 -13.71772 -13.57932 -13.49247 -13.27226 -12.96681 -12.92780 -12.88919 -12.83392 -12.59822 -12.57462 -12.20972 -12.16991 -12.10377 -11.77705 -11.59877 -11.52931 -11.21708 -10.83329 -10.28926 -10.10485 -9.78806 -9.67861 -9.09001 -5.38013 -0.59424 -0.40436 0.30740 0.38696 0.54644 0.64458 0.95982 1.14770 1.42071 1.72841 2.17076 2.33685 2.79711 2.81175 3.03922 3.46414 3.50114 3.59171 3.73208 3.73620 3.88325 4.00486 4.00611 4.09312 4.16034 4.19915 4.21212 4.22333 4.26758 4.35564 4.40067 4.52655 4.59322 4.65739 4.71499 4.78006 4.78491 4.89102 4.98010 5.04951 5.13101 5.14790 5.17601 5.38826 5.47304 5.53801 5.73216 5.84666 6.19660 6.25997 6.47359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.149 4.149 5 C -0.030 4.030 6 C -0.069 4.069 7 H 0.102 0.898 8 C -0.136 4.136 9 C 0.130 3.870 10 H 0.101 0.899 11 N -1.071 6.071 12 S 2.723 3.277 13 O -0.961 6.961 14 O -0.954 6.954 15 C -0.660 4.660 16 C -0.050 4.050 17 C -0.068 4.068 18 O -0.540 6.540 19 Si 0.685 3.315 20 S 0.130 5.870 21 C -0.209 4.209 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.156 4.156 25 C -0.077 4.077 26 C -0.214 4.214 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.421 0.579 34 H 0.111 0.889 35 H 0.394 0.606 36 H -0.238 1.238 37 H -0.235 1.235 38 H 0.176 0.824 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -3.225 1.993 5.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.167 4.167 5 C -0.030 4.030 6 C -0.088 4.088 7 H 0.120 0.880 8 C -0.175 4.175 9 C 0.021 3.979 10 H 0.119 0.881 11 N -0.830 5.830 12 S 2.808 3.192 13 O -0.951 6.951 14 O -0.944 6.944 15 C -0.759 4.759 16 C -0.170 4.170 17 C -0.180 4.180 18 O -0.349 6.349 19 Si 0.583 3.417 20 S 0.393 5.607 21 C -0.344 4.344 22 C -0.104 4.104 23 C -0.182 4.182 24 C -0.174 4.174 25 C -0.095 4.095 26 C -0.233 4.233 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.258 0.742 34 H 0.128 0.872 35 H 0.244 0.756 36 H -0.162 1.162 37 H -0.158 1.158 38 H 0.193 0.807 39 H 0.178 0.822 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.486 -2.984 3.950 6.054 hybrid contribution -0.435 0.870 -0.872 1.306 sum -3.920 -2.114 3.078 5.414 Atomic orbital electron populations 1.23074 0.78169 1.04134 1.01403 1.86073 1.21548 1.26953 1.88623 1.19050 0.92375 0.84200 0.96056 1.20304 0.91213 0.98255 1.06969 1.19522 0.95034 0.92038 0.96433 1.21585 0.90246 0.99257 0.97676 0.87993 1.23513 0.97508 0.98662 0.97851 1.21552 0.84283 0.94746 0.97297 0.88134 1.55022 1.21705 1.28860 1.77452 1.01176 0.72301 0.73151 0.72534 1.93591 1.85809 1.41613 1.74132 1.93568 1.57756 1.58389 1.84731 1.29981 1.19529 0.98267 1.28074 1.23634 0.99726 0.97152 0.96493 1.24427 0.98537 0.93536 1.01517 1.86413 1.62526 1.33763 1.52200 0.94424 0.82237 0.89203 0.75878 1.84479 1.69471 1.00477 1.06259 1.25898 1.10188 0.99826 0.98515 1.19794 0.99723 0.96545 0.94309 1.23542 0.97781 1.00067 0.96764 1.20925 0.93588 0.98225 1.04640 1.20936 0.94633 0.97008 0.96968 1.21253 1.00094 0.92502 1.09459 0.88087 0.92616 0.92573 0.85281 0.88461 0.90153 0.74236 0.87193 0.75573 1.16153 1.15799 0.80702 0.82246 0.89476 0.89385 0.85754 0.85793 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.32 -0.70 10.50 -19.42 -0.20 -0.90 16 3 C 0.13 0.28 6.69 -39.22 -0.26 0.02 16 4 C -0.15 -0.21 9.65 -39.43 -0.38 -0.59 16 5 C -0.03 -0.01 5.29 -104.65 -0.55 -0.56 16 6 C -0.07 0.11 3.81 -90.82 -0.35 -0.23 16 7 H 0.10 -0.27 8.06 -51.93 -0.42 -0.69 16 8 C -0.14 0.23 7.26 -25.77 -0.19 0.04 16 9 C 0.13 -0.16 4.47 -67.12 -0.30 -0.46 16 10 H 0.10 -0.10 7.83 -51.93 -0.41 -0.51 16 11 N -1.07 1.06 3.85 -4.20 -0.02 1.04 16 12 S 2.72 6.20 4.89 -107.50 -0.53 5.67 16 13 O -0.96 -5.06 16.95 -57.17 -0.97 -6.03 16 14 O -0.95 -4.05 16.62 -61.57 -1.02 -5.08 16 15 C -0.66 -1.24 5.74 -41.21 -0.24 -1.47 16 16 C -0.05 -0.06 5.78 -36.00 -0.21 -0.26 16 17 C -0.07 0.11 2.07 36.01 0.07 0.18 16 18 O -0.54 1.96 7.43 -41.67 -0.31 1.65 16 19 Si 0.68 -1.68 31.07 -169.99 -5.28 -6.96 16 20 S 0.13 0.13 20.71 -107.50 -2.23 -2.09 16 21 C -0.21 -0.12 11.23 29.04 0.33 0.21 16 22 C -0.08 -0.11 9.70 -41.21 -0.40 -0.51 16 23 C -0.14 0.21 7.34 -25.92 -0.19 0.02 16 24 C -0.16 -0.03 8.61 -39.56 -0.34 -0.37 16 25 C -0.08 -0.04 10.04 -39.61 -0.40 -0.44 16 26 C -0.21 -0.24 9.04 -39.43 -0.36 -0.60 16 27 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 28 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 29 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 30 H 0.13 0.04 8.05 -52.49 -0.42 -0.38 16 31 H 0.10 -0.20 6.31 -51.93 -0.33 -0.53 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 33 H 0.42 -1.25 7.80 -34.47 -0.27 -1.52 16 34 H 0.11 -0.22 7.77 -51.93 -0.40 -0.62 16 35 H 0.39 -3.26 8.74 45.56 0.40 -2.86 16 36 H -0.24 0.01 7.11 56.52 0.40 0.41 16 37 H -0.23 -0.07 7.11 56.52 0.40 0.33 16 38 H 0.18 -0.32 8.06 -52.49 -0.42 -0.75 16 39 H 0.16 0.09 7.74 -52.49 -0.41 -0.31 16 40 H 0.09 -0.08 7.19 -51.93 -0.37 -0.46 16 41 H 0.09 -0.11 7.73 -51.93 -0.40 -0.51 16 42 H 0.12 -0.17 6.65 -52.49 -0.35 -0.52 16 43 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 44 H 0.13 -0.06 6.30 -52.48 -0.33 -0.39 16 LS Contribution 380.65 15.07 5.74 5.74 Total: 0.00 -10.22 380.65 -12.98 -23.20 By element: Atomic # 1 Polarization: -6.77 SS G_CDS: -5.39 Total: -12.17 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.77 Total: -4.07 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -0.02 Total: 1.04 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -2.51 Total: -10.36 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: -5.28 Total: -6.96 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -2.75 Total: 3.58 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -10.22 -12.98 -23.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10812634_14772022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.343 kcal (2) G-P(sol) polarization free energy of solvation -10.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds