Wall clock time and date at job start Mon Mar 8 2021 09:53:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35894 * 117.00075 * 2 1
4 4 C 1.38710 * 120.05734 * 179.73040 * 3 2 1
5 5 C 1.38164 * 119.94219 * 179.67839 * 4 3 2
6 6 C 1.50708 * 119.97283 * 180.31319 * 5 4 3
7 7 H 1.08994 * 112.84514 * 349.11060 * 6 5 4
8 8 C 1.53778 * 113.61190 * 120.29748 * 6 5 4
9 9 C 1.53775 * 87.08198 * 139.98555 * 8 6 5
10 10 H 1.08996 * 113.61703 * 219.94036 * 9 8 6
11 11 N 1.46497 * 113.61444 * 89.11255 * 9 8 6
12 12 S 1.65606 * 119.99908 * 144.48437 * 11 9 8
13 13 O 1.42093 * 106.40263 * 177.69351 * 12 11 9
14 14 O 1.42105 * 106.40199 * 310.61672 * 12 11 9
15 15 C 1.76199 * 107.21503 * 64.15230 * 12 11 9
16 16 C 1.38216 * 120.00121 * 63.55338 * 15 12 11
17 17 C 1.50697 * 119.99786 * 359.97438 * 16 15 12
18 18 O 1.42892 * 109.47515 * 75.57461 * 17 16 15
19 19 Si 1.86303 * 109.47103 * 195.57712 * 17 16 15
20 20 C 1.38257 * 120.00238 * 179.73857 * 16 15 12
21 21 C 1.38214 * 119.99328 * 0.53472 * 20 16 15
22 22 C 1.38254 * 120.00463 * 359.73904 * 21 20 16
23 23 C 1.38211 * 119.99902 * 359.97438 * 22 21 20
24 24 C 1.53773 * 113.61731 * 217.79930 * 6 5 4
25 25 C 1.38242 * 120.05711 * 0.62108 * 5 4 3
26 26 C 1.38287 * 120.11362 * 359.67151 * 25 5 4
27 27 C 1.38127 * 120.05123 * 0.02562 * 26 25 5
28 28 H 1.08994 * 109.47292 * 60.00016 * 1 2 3
29 29 H 1.09005 * 109.46689 * 180.02562 * 1 2 3
30 30 H 1.09008 * 109.46637 * 299.99544 * 1 2 3
31 31 H 1.08003 * 120.02725 * 359.97438 * 4 3 2
32 32 H 1.08998 * 113.62018 * 254.53825 * 8 6 5
33 33 H 1.09010 * 113.61457 * 25.35509 * 8 6 5
34 34 H 0.96998 * 120.00465 * 324.49229 * 11 9 8
35 35 H 1.09009 * 109.47093 * 315.57384 * 17 16 15
36 36 H 0.96698 * 114.00213 * 65.19344 * 18 17 16
37 37 H 1.48496 * 109.99903 * 179.97438 * 19 17 16
38 38 H 1.48493 * 109.99861 * 301.31521 * 19 17 16
39 39 H 1.07997 * 120.00433 * 180.29357 * 20 16 15
40 40 H 1.08004 * 119.99634 * 179.76522 * 21 20 16
41 41 H 1.08008 * 119.99907 * 180.02562 * 22 21 20
42 42 H 1.08007 * 119.99894 * 179.97438 * 23 22 21
43 43 H 1.09002 * 113.61343 * 334.56549 * 24 6 5
44 44 H 1.08993 * 113.61777 * 105.47553 * 24 6 5
45 45 H 1.08003 * 119.94813 * 179.70164 * 25 5 4
46 46 H 1.07997 * 119.97376 * 180.02562 * 26 25 5
47 47 H 1.08001 * 120.02443 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 3.4311 1.2848 0.0056
5 6 4.0560 2.5171 -0.0011
6 6 5.5609 2.5982 -0.0021
7 1 6.0366 1.6370 0.1925
8 6 6.1372 3.3347 -1.2228
9 6 7.1513 3.9740 -0.2597
10 1 7.3478 5.0258 -0.4676
11 7 8.3764 3.1887 -0.0914
12 16 9.8310 3.9554 0.1055
13 8 10.8006 2.9341 0.2948
14 8 9.9162 4.9260 -0.9290
15 6 9.7481 4.8499 1.6213
16 6 9.5968 4.1722 2.8163
17 6 9.5021 2.6682 2.8228
18 8 10.7993 2.1083 2.6088
19 14 8.8418 2.0945 4.4677
20 6 9.5371 4.8736 4.0062
21 6 9.6177 6.2534 3.9996
22 6 9.7633 6.9318 2.8038
23 6 9.8289 6.2301 1.6148
24 6 6.1164 3.7475 0.8552
25 6 3.3019 3.6757 -0.0005
26 6 1.9209 3.6048 0.0000
27 6 1.2914 2.3752 0.0004
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 4.0207 0.3799 0.0105
32 1 6.5919 2.6714 -1.9585
33 1 5.4453 4.0497 -1.6681
34 1 8.3357 2.2195 -0.0953
35 1 8.8305 2.3429 2.0282
36 1 11.4286 2.2905 3.3201
37 1 8.7432 0.6130 4.4866
38 1 9.7317 2.5587 5.5620
39 1 9.4236 4.3438 4.9404
40 1 9.5673 6.8017 4.9288
41 1 9.8267 8.0100 2.7988
42 1 9.9423 6.7600 0.6806
43 1 5.4194 4.5764 0.9788
44 1 6.5545 3.4175 1.7970
45 1 3.7922 4.6381 -0.0009
46 1 1.3340 4.5114 0.0001
47 1 0.2128 2.3203 0.0004
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_40_10812634_2726874.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 09:53:01
Heat of formation + Delta-G solvation = -44.224961 kcal
Electronic energy + Delta-G solvation = -32792.741588 eV
Core-core repulsion = 28421.977100 eV
Total energy + Delta-G solvation = -4370.764487 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 376.122 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.38396 -40.66953 -40.23699 -38.47600 -37.99506 -37.54157 -36.92900 -34.17374
-32.79802 -32.35404 -31.92599 -30.72478 -28.19845 -26.98862 -26.53773 -25.81883
-24.38753 -23.50766 -22.76532 -22.38553 -20.86303 -20.28466 -19.36303 -18.65068
-18.32326 -18.09341 -17.21527 -17.16418 -16.87617 -16.77456 -16.63469 -16.52284
-16.04376 -15.92382 -15.79765 -15.57142 -15.16716 -14.99608 -14.47217 -14.40110
-14.17943 -14.04530 -13.88450 -13.59262 -13.49713 -13.44263 -13.22030 -13.18237
-13.07993 -12.92922 -12.82286 -12.56829 -12.31405 -12.18143 -12.08537 -11.98550
-11.62091 -11.52355 -11.41841 -11.14867 -10.73373 -10.43980 -10.36540 -10.02989
-9.67169 -9.08897 -4.99259 -0.67119 -0.23623 0.17043 0.40209 0.54864
1.15544 1.52471 1.89917 1.92908 2.40004 2.43580 2.71341 2.81457
3.25259 3.43166 3.47541 3.57875 3.74401 3.79665 3.85588 3.94139
3.98226 4.05867 4.13300 4.16811 4.23200 4.27529 4.32538 4.36616
4.37103 4.40425 4.46908 4.60418 4.61947 4.70290 4.73149 4.80904
4.82987 4.93291 5.02051 5.06597 5.10555 5.17941 5.20219 5.21676
5.33818 5.41274 5.51116 5.58177 5.76062 5.79285 5.90866 6.03096
6.47598 6.48990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.342 6.342
3 C 0.107 3.893
4 C -0.169 4.169
5 C -0.030 4.030
6 C -0.075 4.075
7 H 0.104 0.896
8 C -0.132 4.132
9 C 0.118 3.882
10 H 0.111 0.889
11 N -1.092 6.092
12 S 2.696 3.304
13 O -0.963 6.963
14 O -0.993 6.993
15 C -0.660 4.660
16 C -0.017 4.017
17 C -0.131 4.131
18 O -0.515 6.515
19 Si 0.778 3.222
20 C -0.147 4.147
21 C -0.054 4.054
22 C -0.135 4.135
23 C -0.036 4.036
24 C -0.140 4.140
25 C -0.156 4.156
26 C -0.083 4.083
27 C -0.224 4.224
28 H 0.062 0.938
29 H 0.113 0.887
30 H 0.064 0.936
31 H 0.126 0.874
32 H 0.075 0.925
33 H 0.106 0.894
34 H 0.426 0.574
35 H 0.125 0.875
36 H 0.379 0.621
37 H -0.296 1.296
38 H -0.267 1.267
39 H 0.152 0.848
40 H 0.163 0.837
41 H 0.157 0.843
42 H 0.144 0.856
43 H 0.113 0.887
44 H 0.092 0.908
45 H 0.147 0.853
46 H 0.144 0.856
47 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.195 4.714 5.323 10.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.256 6.256
3 C 0.062 3.938
4 C -0.188 4.188
5 C -0.030 4.030
6 C -0.093 4.093
7 H 0.122 0.878
8 C -0.172 4.172
9 C 0.011 3.989
10 H 0.129 0.871
11 N -0.853 5.853
12 S 2.788 3.212
13 O -0.953 6.953
14 O -0.983 6.983
15 C -0.748 4.748
16 C -0.019 4.019
17 C -0.239 4.239
18 O -0.322 6.322
19 Si 0.681 3.319
20 C -0.165 4.165
21 C -0.072 4.072
22 C -0.153 4.153
23 C -0.056 4.056
24 C -0.179 4.179
25 C -0.174 4.174
26 C -0.101 4.101
27 C -0.242 4.242
28 H 0.080 0.920
29 H 0.131 0.869
30 H 0.082 0.918
31 H 0.144 0.856
32 H 0.093 0.907
33 H 0.124 0.876
34 H 0.263 0.737
35 H 0.142 0.858
36 H 0.228 0.772
37 H -0.224 1.224
38 H -0.193 1.193
39 H 0.169 0.831
40 H 0.180 0.820
41 H 0.175 0.825
42 H 0.161 0.839
43 H 0.131 0.869
44 H 0.110 0.890
45 H 0.165 0.835
46 H 0.161 0.839
47 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -6.509 3.993 4.877 9.061
hybrid contribution 0.672 -0.403 0.231 0.817
sum -5.836 3.590 5.109 8.547
Atomic orbital electron populations
1.23271 0.76765 1.05228 1.02081 1.86039 1.23193 1.27540 1.88863
1.19314 0.92869 0.84609 0.97003 1.20513 0.91406 0.98996 1.07850
1.19629 0.95593 0.91714 0.96068 1.21628 0.89719 0.99979 0.97991
0.87750 1.23436 0.97387 1.00069 0.96267 1.21815 0.83444 0.95498
0.98160 0.87128 1.55210 1.22550 1.18397 1.89109 1.01595 0.72702
0.73080 0.73800 1.93683 1.57757 1.57355 1.86519 1.93544 1.86165
1.63327 1.55279 1.30500 1.18881 1.06653 1.18814 1.19931 0.93846
0.95492 0.92642 1.25801 0.90460 0.90847 1.16795 1.86936 1.20641
1.76484 1.48135 0.94011 0.88089 0.78220 0.71578 1.21531 1.01719
0.95639 0.97660 1.21848 0.91724 0.93975 0.99626 1.21689 0.99832
1.01919 0.91895 1.21221 0.92046 0.91654 1.00634 1.23681 0.97509
0.98662 0.98032 1.21200 0.93576 0.98877 1.03760 1.21254 0.95185
0.97354 0.96341 1.21471 1.00791 0.92527 1.09426 0.91956 0.86909
0.91786 0.85593 0.90660 0.87582 0.73662 0.85768 0.77242 1.22374
1.19293 0.83110 0.81971 0.82545 0.83873 0.86860 0.88962 0.83534
0.83869 0.84550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16
2 O -0.34 -1.82 10.50 -92.35 -0.97 -2.78 16
3 C 0.11 0.48 6.69 22.51 0.15 0.63 16
4 C -0.17 -0.51 9.65 22.37 0.22 -0.29 16
5 C -0.03 0.04 5.29 -19.88 -0.11 -0.07 16
6 C -0.07 0.38 3.80 -11.01 -0.04 0.34 16
7 H 0.10 -0.61 8.05 -2.39 -0.02 -0.63 16
8 C -0.13 0.64 7.33 31.12 0.23 0.87 16
9 C 0.12 -0.58 4.50 45.52 0.20 -0.37 16
10 H 0.11 -0.58 7.80 -2.39 -0.02 -0.60 16
11 N -1.09 2.08 4.42 -167.20 -0.74 1.34 16
12 S 2.70 14.46 4.95 -56.49 -0.28 14.18 16
13 O -0.96 -11.95 15.02 -119.16 -1.79 -13.74 16
14 O -0.99 -10.84 16.54 -128.00 -2.12 -12.95 16
15 C -0.66 -1.18 5.86 22.27 0.13 -1.05 16
16 C -0.02 0.01 5.27 -19.87 -0.10 -0.09 16
17 C -0.13 0.05 1.88 71.23 0.13 0.18 16
18 O -0.52 -2.76 10.58 -127.44 -1.35 -4.10 16
19 Si 0.78 -2.95 30.20 68.60 2.07 -0.88 16
20 C -0.15 0.63 8.66 22.27 0.19 0.82 16
21 C -0.05 0.32 10.05 22.27 0.22 0.55 16
22 C -0.13 0.58 10.05 22.27 0.22 0.80 16
23 C -0.04 0.00 9.55 22.27 0.21 0.21 16
24 C -0.14 1.10 7.25 31.12 0.23 1.33 16
25 C -0.16 0.43 8.61 22.28 0.19 0.62 16
26 C -0.08 0.12 10.04 22.26 0.22 0.35 16
27 C -0.22 -0.26 9.04 22.37 0.20 -0.06 16
28 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16
29 H 0.11 -0.60 8.14 -2.38 -0.02 -0.62 16
30 H 0.06 -0.26 7.66 -2.38 -0.02 -0.28 16
31 H 0.13 0.30 8.05 -2.91 -0.02 0.27 16
32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16
33 H 0.11 -0.64 7.72 -2.38 -0.02 -0.66 16
34 H 0.43 -1.94 8.47 -96.75 -0.82 -2.76 16
35 H 0.12 -0.34 5.80 -2.38 -0.01 -0.36 16
36 H 0.38 -0.24 8.61 -74.06 -0.64 -0.88 16
37 H -0.30 -1.17 7.11 99.48 0.71 -0.47 16
38 H -0.27 0.50 6.66 99.48 0.66 1.16 16
39 H 0.15 -1.17 4.88 -2.91 -0.01 -1.18 16
40 H 0.16 -1.90 8.06 -2.91 -0.02 -1.93 16
41 H 0.16 -1.40 8.06 -2.91 -0.02 -1.43 16
42 H 0.14 -0.05 7.34 -2.91 -0.02 -0.07 16
43 H 0.11 -1.16 6.31 -2.39 -0.02 -1.17 16
44 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16
45 H 0.15 -1.11 6.65 -2.91 -0.02 -1.13 16
46 H 0.14 -0.84 8.06 -2.91 -0.02 -0.86 16
47 H 0.14 -0.28 6.30 -2.91 -0.02 -0.30 16
Total: 0.00 -26.46 389.18 -1.99 -28.44
By element:
Atomic # 1 Polarization: -14.90 SS G_CDS: -0.43 Total: -15.33 kcal
Atomic # 6 Polarization: 2.20 SS G_CDS: 3.62 Total: 5.82 kcal
Atomic # 7 Polarization: 2.08 SS G_CDS: -0.74 Total: 1.34 kcal
Atomic # 8 Polarization: -27.36 SS G_CDS: -6.22 Total: -33.58 kcal
Atomic # 14 Polarization: -2.95 SS G_CDS: 2.07 Total: -0.88 kcal
Atomic # 16 Polarization: 14.46 SS G_CDS: -0.28 Total: 14.18 kcal
Total: -26.46 -1.99 -28.44 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_40_10812634_2726874.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.783 kcal
(2) G-P(sol) polarization free energy of solvation -26.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.442 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.225 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds