Wall clock time and date at job start Mon Mar 8 2021 08:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35891 * 116.99958 * 2 1 4 4 C 1.38714 * 120.05888 * 359.97438 * 3 2 1 5 5 C 1.38161 * 119.94312 * 180.23608 * 4 3 2 6 6 C 1.38249 * 120.05751 * 359.50846 * 5 4 3 7 7 C 1.38281 * 120.10957 * 0.47070 * 6 5 4 8 8 C 1.50702 * 119.97271 * 179.76648 * 7 6 5 9 9 H 1.08998 * 112.85108 * 168.82297 * 8 7 6 10 10 C 1.53777 * 113.61413 * 300.02401 * 8 7 6 11 11 C 1.53779 * 87.08380 * 139.98082 * 10 8 7 12 12 H 1.09001 * 113.61086 * 220.01748 * 11 10 8 13 13 N 1.46492 * 113.61589 * 89.19993 * 11 10 8 14 14 C 1.46501 * 120.00109 * 299.99461 * 13 11 10 15 15 S 1.65599 * 120.00124 * 120.00133 * 13 11 10 16 16 O 1.42100 * 106.40401 * 203.53640 * 15 13 11 17 17 O 1.42100 * 106.40173 * 336.45762 * 15 13 11 18 18 C 1.76197 * 107.21869 * 89.99820 * 15 13 11 19 19 C 1.33396 * 125.20467 * 179.72014 * 18 15 13 20 20 C 1.50693 * 122.53597 * 0.02562 * 19 18 15 21 21 O 1.42901 * 109.47393 * 284.99719 * 20 19 18 22 22 Si 1.86304 * 109.47008 * 165.00061 * 20 19 18 23 23 C 1.38422 * 114.92074 * 179.85739 * 19 18 15 24 24 C 1.33392 * 114.92434 * 0.43113 * 23 19 18 25 25 S 1.75885 * 109.59019 * 359.76979 * 24 23 19 26 26 C 1.53780 * 87.07789 * 334.56216 * 11 10 8 27 27 C 1.38123 * 120.05904 * 359.78398 * 7 6 5 28 28 H 1.09006 * 109.47006 * 300.00237 * 1 2 3 29 29 H 1.08997 * 109.47361 * 60.00360 * 1 2 3 30 30 H 1.09006 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.02359 * 359.95128 * 4 3 2 32 32 H 1.07998 * 119.97295 * 179.74769 * 5 4 3 33 33 H 1.08001 * 119.94255 * 180.25369 * 6 5 4 34 34 H 1.09002 * 113.61274 * 254.52723 * 10 8 7 35 35 H 1.08999 * 113.61576 * 25.42815 * 10 8 7 36 36 H 1.09008 * 109.46755 * 90.00256 * 14 13 11 37 37 H 1.08994 * 109.47579 * 210.00611 * 14 13 11 38 38 H 1.09002 * 109.47056 * 330.00854 * 14 13 11 39 39 H 1.09004 * 109.47698 * 45.00443 * 20 19 18 40 40 H 0.96700 * 113.99968 * 179.97438 * 21 20 19 41 41 H 1.48494 * 110.00139 * 59.99983 * 22 20 19 42 42 H 1.48504 * 109.99976 * 181.31883 * 22 20 19 43 43 H 1.08004 * 122.54107 * 180.20195 * 23 19 18 44 44 H 1.07993 * 125.20645 * 179.78900 * 24 23 19 45 45 H 1.08998 * 113.61639 * 270.88438 * 26 11 10 46 46 H 1.09004 * 113.60821 * 139.98419 * 26 11 10 47 47 H 1.07992 * 120.03265 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3749 -0.0005 5 6 1.9213 3.6047 -0.0055 6 6 3.3020 3.6757 0.0004 7 6 4.0562 2.5167 0.0014 8 6 5.5610 2.5976 0.0025 9 1 6.0365 1.6365 0.1979 10 6 6.1392 3.3343 -1.2173 11 6 7.1519 3.9735 -0.2527 12 1 7.3478 5.0256 -0.4595 13 7 8.3776 3.1891 -0.0842 14 6 8.3065 1.8221 0.4377 15 16 9.8436 3.8477 -0.4835 16 8 10.7151 2.7568 -0.7475 17 8 9.5777 4.8761 -1.4274 18 6 10.4673 4.6451 0.9586 19 6 11.6326 5.2896 1.0378 20 6 12.5729 5.4111 -0.1335 21 8 13.2348 4.1623 -0.3445 22 14 13.8379 6.7323 0.2201 23 6 11.9109 5.8414 2.2764 24 6 10.9758 5.6374 3.2056 25 16 9.6523 4.7067 2.5160 26 6 6.1154 3.7471 0.8605 27 6 3.4316 1.2847 0.0010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2130 2.3199 -0.0018 32 1 1.3345 4.5113 -0.0100 33 1 3.7923 4.6380 0.0007 34 1 6.5950 2.6709 -1.9523 35 1 5.4485 4.0503 -1.6627 36 1 8.1900 1.1227 -0.3904 37 1 9.2231 1.5924 0.9810 38 1 7.4535 1.7339 1.1105 39 1 12.0082 5.6786 -1.0266 40 1 13.8566 4.1670 -1.0850 41 1 14.6146 6.3795 1.4356 42 1 14.7519 6.8840 -0.9404 43 1 12.8181 6.3922 2.4765 44 1 11.0239 5.9901 4.2252 45 1 5.4183 4.5760 0.9832 46 1 6.5522 3.4170 1.8031 47 1 4.0210 0.3799 0.0022 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10860590_13652106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:36:34 Heat of formation + Delta-G solvation = -25.878706 kcal Electronic energy + Delta-G solvation = -32961.947672 eV Core-core repulsion = 28525.593365 eV Total energy + Delta-G solvation = -4436.354307 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.094 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.56888 -40.50744 -39.94086 -38.43844 -38.15902 -37.39511 -37.06400 -35.07633 -32.11526 -31.49384 -30.93018 -28.49255 -28.17650 -28.00915 -26.63722 -25.15281 -24.19522 -23.55659 -22.28503 -21.44788 -20.66942 -19.72936 -19.34222 -18.85391 -18.74085 -18.08348 -17.36966 -17.33334 -17.12750 -16.86357 -16.65737 -16.25816 -16.13583 -15.87642 -15.83394 -15.20863 -14.95439 -14.68067 -14.44592 -14.29275 -14.22951 -14.15886 -13.97789 -13.71608 -13.68894 -13.52666 -13.35667 -13.25532 -13.20007 -13.03385 -12.88197 -12.79671 -12.58303 -12.53862 -12.41267 -12.09726 -12.01348 -11.65095 -11.56197 -11.41436 -11.22126 -10.70131 -10.39078 -10.17182 -9.70509 -9.60724 -9.11912 -5.00774 -0.87077 -0.65177 0.24397 0.36786 0.51739 0.67299 1.12814 1.23360 1.55311 1.75818 1.84096 2.37453 2.47937 2.77918 3.12555 3.31821 3.46520 3.65551 3.68206 3.75069 3.78579 3.85348 3.91688 4.00637 4.11690 4.14490 4.22185 4.25437 4.29484 4.35111 4.40530 4.48706 4.55102 4.58325 4.65764 4.69550 4.71396 4.76750 4.84489 4.86586 4.91828 4.99284 5.04208 5.07476 5.12137 5.12531 5.32151 5.38690 5.52165 5.57862 5.75850 5.87385 6.39813 6.46366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.108 3.892 4 C -0.223 4.223 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.032 4.032 8 C -0.079 4.079 9 H 0.112 0.888 10 C -0.138 4.138 11 C 0.112 3.888 12 H 0.115 0.885 13 N -0.977 5.977 14 C 0.069 3.931 15 S 2.720 3.280 16 O -0.966 6.966 17 O -0.974 6.974 18 C -0.798 4.798 19 C 0.034 3.966 20 C -0.137 4.137 21 O -0.545 6.545 22 Si 0.798 3.202 23 C -0.177 4.177 24 C -0.153 4.153 25 S 0.245 5.755 26 C -0.129 4.129 27 C -0.168 4.168 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.397 0.603 41 H -0.269 1.269 42 H -0.277 1.277 43 H 0.171 0.829 44 H 0.214 0.786 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 4.765 5.360 8.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.063 3.937 4 C -0.242 4.242 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.032 4.032 8 C -0.097 4.097 9 H 0.130 0.870 10 C -0.178 4.178 11 C 0.006 3.994 12 H 0.133 0.867 13 N -0.817 5.817 14 C -0.075 4.075 15 S 2.809 3.191 16 O -0.956 6.956 17 O -0.964 6.964 18 C -0.999 4.999 19 C 0.017 3.983 20 C -0.245 4.245 21 O -0.355 6.355 22 Si 0.698 3.302 23 C -0.206 4.206 24 C -0.290 4.290 25 S 0.512 5.488 26 C -0.167 4.167 27 C -0.187 4.187 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.248 0.752 41 H -0.195 1.195 42 H -0.203 1.203 43 H 0.188 0.812 44 H 0.230 0.770 45 H 0.135 0.865 46 H 0.110 0.890 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.089 3.939 5.758 8.635 hybrid contribution 1.451 -0.573 -0.940 1.821 sum -3.638 3.366 4.817 6.912 Atomic orbital electron populations 1.23280 0.76709 1.05298 1.02086 1.86037 1.23243 1.27480 1.88840 1.19302 0.92829 0.84635 0.96934 1.21479 1.00839 0.92498 1.09361 1.21255 0.95119 0.97421 0.96303 1.21210 0.93659 0.98855 1.03815 1.19637 0.95500 0.91837 0.96215 1.21867 0.89807 1.00280 0.97750 0.87000 1.23478 0.97707 1.00140 0.96435 1.22011 0.83326 0.95361 0.98733 0.86698 1.57101 1.20322 1.23305 1.80942 1.22027 1.04845 0.80067 1.00610 1.01078 0.72070 0.72857 0.73067 1.93593 1.64938 1.53614 1.83458 1.93555 1.84807 1.59608 1.58430 1.35603 1.12746 1.26519 1.25078 1.18171 0.91469 0.93109 0.95590 1.25530 1.03712 0.96965 0.98272 1.86647 1.61046 1.30983 1.56810 0.93657 0.75928 0.82132 0.78493 1.20425 1.03252 1.05444 0.91447 1.26581 0.96487 1.00724 1.05241 1.83806 1.19310 1.49768 0.95958 1.23517 0.96836 0.98870 0.97522 1.20503 0.91444 0.98934 1.07812 0.91796 0.91941 0.86804 0.84446 0.83809 0.83612 0.91389 0.87566 0.91435 0.90764 0.87109 0.90337 0.75195 1.19543 1.20318 0.81173 0.76965 0.86452 0.88961 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.95 10.50 -92.33 -0.97 -2.92 16 3 C 0.11 0.55 6.69 22.51 0.15 0.70 16 4 C -0.22 -0.41 9.04 22.37 0.20 -0.20 16 5 C -0.08 0.05 10.04 22.25 0.22 0.28 16 6 C -0.16 0.25 8.61 22.28 0.19 0.45 16 7 C -0.03 0.00 5.29 -19.88 -0.11 -0.10 16 8 C -0.08 0.27 3.31 -11.01 -0.04 0.24 16 9 H 0.11 -0.50 5.51 -2.39 -0.01 -0.51 16 10 C -0.14 0.26 7.21 31.12 0.22 0.48 16 11 C 0.11 -0.23 4.37 45.52 0.20 -0.04 16 12 H 0.12 -0.25 7.41 -2.39 -0.02 -0.27 16 13 N -0.98 -1.12 3.19 -513.77 -1.64 -2.76 16 14 C 0.07 -0.14 8.70 127.77 1.11 0.97 16 15 S 2.72 23.30 4.97 -56.49 -0.28 23.02 16 16 O -0.97 -14.63 16.49 -125.53 -2.07 -16.70 16 17 O -0.97 -12.22 16.33 -128.00 -2.09 -14.31 16 18 C -0.80 -4.41 6.48 66.72 0.43 -3.97 16 19 C 0.03 0.19 5.17 -20.92 -0.11 0.08 16 20 C -0.14 -0.76 2.32 71.23 0.17 -0.59 16 21 O -0.54 -4.76 12.25 -147.81 -1.81 -6.57 16 22 Si 0.80 -0.62 30.41 68.60 2.09 1.46 16 23 C -0.18 -0.01 8.74 21.22 0.19 0.18 16 24 C -0.15 0.59 11.23 66.72 0.75 1.34 16 25 S 0.25 -0.50 23.12 -56.49 -1.31 -1.81 16 26 C -0.13 0.81 6.67 31.12 0.21 1.02 16 27 C -0.17 -0.63 9.65 22.37 0.22 -0.41 16 28 H 0.06 -0.24 7.66 -2.38 -0.02 -0.26 16 29 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 30 H 0.11 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H 0.14 -0.22 6.30 -2.91 -0.02 -0.23 16 32 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 33 H 0.15 -0.92 6.65 -2.91 -0.02 -0.94 16 34 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.11 -0.36 7.72 -2.39 -0.02 -0.38 16 36 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 37 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 38 H 0.11 -0.79 4.84 -2.39 -0.01 -0.81 16 39 H 0.08 0.44 7.26 -2.39 -0.02 0.42 16 40 H 0.40 0.21 8.74 -74.06 -0.65 -0.44 16 41 H -0.27 -0.69 6.87 99.48 0.68 -0.01 16 42 H -0.28 -0.79 7.11 99.48 0.71 -0.08 16 43 H 0.17 -0.66 5.57 -2.91 -0.02 -0.68 16 44 H 0.21 -2.41 8.06 -2.91 -0.02 -2.43 16 45 H 0.12 -1.05 6.31 -2.39 -0.02 -1.06 16 46 H 0.09 -0.75 7.37 -2.39 -0.02 -0.77 16 47 H 0.13 0.36 8.05 -2.91 -0.02 0.33 16 Total: 0.00 -26.51 399.94 -2.56 -29.08 By element: Atomic # 1 Polarization: -10.37 SS G_CDS: 0.39 Total: -9.97 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.12 Total: 1.48 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -1.64 Total: -2.76 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -6.94 Total: -40.50 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: 2.09 Total: 1.46 kcal Atomic # 16 Polarization: 22.80 SS G_CDS: -1.59 Total: 21.21 kcal Total: -26.51 -2.56 -29.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10860590_13652106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.199 kcal (2) G-P(sol) polarization free energy of solvation -26.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds