Wall clock time and date at job start Mon Mar 8 2021 08:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00194 * 2 1 4 4 C 1.38712 * 120.05311 * 359.97438 * 3 2 1 5 5 C 1.38169 * 119.94210 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.05157 * 0.27766 * 5 4 3 7 7 C 1.38291 * 120.11498 * 359.44466 * 6 5 4 8 8 C 1.50702 * 119.97105 * 180.29917 * 7 6 5 9 9 H 1.08994 * 112.84878 * 170.59077 * 8 7 6 10 10 C 1.53784 * 113.61573 * 301.78434 * 8 7 6 11 11 C 1.53781 * 87.08075 * 139.98077 * 10 8 7 12 12 H 1.08995 * 113.61408 * 219.93397 * 11 10 8 13 13 N 1.46502 * 113.61069 * 89.11693 * 11 10 8 14 14 C 1.46499 * 120.00135 * 299.99663 * 13 11 10 15 15 S 1.65599 * 119.99641 * 120.00295 * 13 11 10 16 16 O 1.42108 * 106.39842 * 203.53479 * 15 13 11 17 17 O 1.42097 * 106.40448 * 336.45390 * 15 13 11 18 18 C 1.76202 * 107.21958 * 89.99984 * 15 13 11 19 19 C 1.33389 * 122.53874 * 98.02999 * 18 15 13 20 20 C 1.50700 * 125.20554 * 0.02562 * 19 18 15 21 21 S 1.75885 * 109.58991 * 180.02562 * 19 18 15 22 22 C 1.75884 * 90.97304 * 359.97438 * 21 19 18 23 23 C 1.50702 * 125.20274 * 180.02562 * 22 21 19 24 24 C 1.33392 * 109.59337 * 359.73281 * 22 21 19 25 25 C 1.50698 * 122.54353 * 180.23768 * 24 22 21 26 26 O 1.42903 * 109.46777 * 49.71475 * 25 24 22 27 27 Si 1.86303 * 109.47190 * 289.71974 * 25 24 22 28 28 C 1.53781 * 113.61340 * 39.39240 * 8 7 6 29 29 C 1.38111 * 120.05337 * 0.55978 * 7 6 5 30 30 H 1.08998 * 109.47029 * 60.00054 * 1 2 3 31 31 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47099 * 299.99773 * 1 2 3 33 33 H 1.07998 * 120.02532 * 359.95909 * 4 3 2 34 34 H 1.07993 * 119.97175 * 180.02562 * 5 4 3 35 35 H 1.08008 * 119.94044 * 179.70327 * 6 5 4 36 36 H 1.08993 * 113.61731 * 254.53357 * 10 8 7 37 37 H 1.09003 * 113.61272 * 25.34893 * 10 8 7 38 38 H 1.09000 * 109.46587 * 90.00455 * 14 13 11 39 39 H 1.09001 * 109.46949 * 210.00079 * 14 13 11 40 40 H 1.08999 * 109.47012 * 330.00708 * 14 13 11 41 41 H 1.08996 * 109.47034 * 90.00447 * 20 19 18 42 42 H 1.08997 * 109.46599 * 210.00492 * 20 19 18 43 43 H 1.08997 * 109.46902 * 330.00089 * 20 19 18 44 44 H 1.08992 * 109.47131 * 355.72038 * 23 22 21 45 45 H 1.09001 * 109.46873 * 115.72743 * 23 22 21 46 46 H 1.09009 * 109.46863 * 235.72106 * 23 22 21 47 47 H 1.08993 * 109.47384 * 169.71717 * 25 24 22 48 48 H 0.96699 * 114.00364 * 289.02011 * 26 25 24 49 49 H 1.48502 * 109.99801 * 58.67767 * 27 25 24 50 50 H 1.48497 * 109.99866 * 179.97438 * 27 25 24 51 51 H 1.08995 * 113.61785 * 334.56297 * 28 8 7 52 52 H 1.08999 * 113.61338 * 105.47107 * 28 8 7 53 53 H 1.08009 * 120.02995 * 179.70215 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9214 3.6048 0.0000 6 6 3.3019 3.6757 -0.0047 7 6 4.0562 2.5166 0.0016 8 6 5.5611 2.5977 0.0032 9 1 6.0368 1.6318 0.1725 10 6 6.1379 3.3664 -1.1973 11 6 7.1516 3.9799 -0.2170 12 1 7.3483 5.0368 -0.3969 13 7 8.3767 3.1903 -0.0693 14 6 8.3046 1.8104 0.4175 15 16 9.8431 3.8577 -0.4522 16 8 10.7135 2.7731 -0.7444 17 8 9.5777 4.9101 -1.3694 18 6 10.4682 4.6174 1.0095 19 6 11.3571 4.0200 1.8047 20 6 11.9418 2.6495 1.5789 21 16 11.7423 5.0765 3.1571 22 6 10.6426 6.3067 2.5481 23 6 10.3827 7.6397 3.2013 24 6 10.0787 5.8819 1.4164 25 6 9.0880 6.7130 0.6426 26 8 9.6162 8.0268 0.4499 27 14 7.4898 6.8198 1.5940 28 6 6.1164 3.7223 0.8930 29 6 3.4316 1.2848 0.0010 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2131 2.3199 -0.0016 34 1 1.3345 4.5114 0.0000 35 1 3.7923 4.6380 -0.0091 36 1 6.5929 2.7229 -1.9501 37 1 5.4462 4.0929 -1.6237 38 1 8.1871 1.1327 -0.4281 39 1 9.2213 1.5661 0.9542 40 1 7.4518 1.7059 1.0882 41 1 12.8490 2.7356 0.9809 42 1 12.1817 2.1942 2.5396 43 1 11.2175 2.0277 1.0528 44 1 10.9222 7.6924 4.1468 45 1 10.7234 8.4392 2.5434 46 1 9.3142 7.7517 3.3859 47 1 8.9036 6.2498 -0.3266 48 1 9.6477 8.5602 1.2558 49 1 7.7332 7.4206 2.9301 50 1 6.5045 7.6374 0.8418 51 1 5.4194 4.5473 1.0400 52 1 6.5542 3.3655 1.8253 53 1 4.0211 0.3798 0.0010 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10860590_15065288.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:36:46 Heat of formation + Delta-G solvation = -22.453262 kcal Electronic energy + Delta-G solvation = -38651.159051 eV Core-core repulsion = 33903.878045 eV Total energy + Delta-G solvation = -4747.281006 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.126 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.50320 -40.49760 -40.37354 -38.74224 -38.09870 -37.44185 -37.10594 -34.95246 -34.11974 -32.05485 -31.10466 -30.85599 -28.40563 -28.12434 -27.95846 -26.58579 -25.93196 -25.05417 -23.49970 -23.24193 -22.13153 -21.02857 -20.59811 -19.54730 -19.24586 -18.73863 -18.34147 -18.10911 -17.21818 -17.18904 -16.95976 -16.79563 -16.60958 -16.25430 -16.12004 -15.86419 -15.80548 -15.49495 -15.12024 -14.86787 -14.67446 -14.57960 -14.38001 -14.21346 -14.06953 -14.02718 -13.90408 -13.73601 -13.64937 -13.49303 -13.44496 -13.27202 -13.21401 -13.10147 -12.93354 -12.78745 -12.71339 -12.60006 -12.50641 -12.21320 -12.03466 -11.93797 -11.64410 -11.46733 -11.34636 -11.31205 -11.17405 -10.94247 -10.09055 -9.92902 -9.63625 -9.40035 -9.06161 -5.11564 -0.87362 -0.45179 0.38483 0.43094 0.57658 0.65321 0.77479 1.16400 1.43064 1.79974 1.93779 2.42394 2.56581 2.84002 3.06517 3.27550 3.47148 3.49493 3.66154 3.72763 3.80086 3.86276 3.96863 3.97627 4.07853 4.09176 4.16072 4.25549 4.28555 4.34505 4.38236 4.41196 4.45297 4.48238 4.53276 4.60513 4.63618 4.65797 4.70354 4.73650 4.76931 4.82756 4.86408 4.93887 4.96344 5.01613 5.07490 5.14267 5.18145 5.20290 5.21470 5.25516 5.40683 5.45057 5.58878 5.65056 5.83577 5.93266 6.33936 6.51531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.341 6.341 3 C 0.107 3.893 4 C -0.224 4.224 5 C -0.085 4.085 6 C -0.160 4.160 7 C -0.029 4.029 8 C -0.074 4.074 9 H 0.121 0.879 10 C -0.139 4.139 11 C 0.107 3.893 12 H 0.100 0.900 13 N -0.969 5.969 14 C 0.066 3.934 15 S 2.707 3.293 16 O -0.964 6.964 17 O -0.977 6.977 18 C -0.693 4.693 19 C -0.051 4.051 20 C -0.123 4.123 21 S 0.179 5.821 22 C -0.201 4.201 23 C -0.113 4.113 24 C -0.071 4.071 25 C -0.121 4.121 26 O -0.537 6.537 27 Si 0.717 3.283 28 C -0.140 4.140 29 C -0.164 4.164 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.141 0.859 48 H 0.375 0.625 49 H -0.236 1.236 50 H -0.259 1.259 51 H 0.117 0.883 52 H 0.108 0.892 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -2.307 6.863 8.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.255 6.255 3 C 0.062 3.938 4 C -0.243 4.243 5 C -0.103 4.103 6 C -0.178 4.178 7 C -0.029 4.029 8 C -0.092 4.092 9 H 0.139 0.861 10 C -0.179 4.179 11 C 0.001 3.999 12 H 0.118 0.882 13 N -0.808 5.808 14 C -0.078 4.078 15 S 2.798 3.202 16 O -0.954 6.954 17 O -0.967 6.967 18 C -0.793 4.793 19 C -0.172 4.172 20 C -0.181 4.181 21 S 0.446 5.554 22 C -0.319 4.319 23 C -0.170 4.170 24 C -0.082 4.082 25 C -0.230 4.230 26 O -0.346 6.346 27 Si 0.615 3.385 28 C -0.179 4.179 29 C -0.183 4.183 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.158 0.842 48 H 0.226 0.774 49 H -0.161 1.161 50 H -0.184 1.184 51 H 0.135 0.865 52 H 0.126 0.874 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.601 -2.316 7.140 8.325 hybrid contribution -0.209 1.422 -0.688 1.593 sum -3.810 -0.894 6.452 7.547 Atomic orbital electron populations 1.23258 0.76872 1.05210 1.01988 1.86037 1.23077 1.27491 1.88866 1.19325 0.92980 0.84507 0.97013 1.21457 1.00738 0.92600 1.09517 1.21227 0.95231 0.97320 0.96547 1.21229 0.93613 0.99051 1.03865 1.19640 0.95643 0.91640 0.95993 1.21869 0.89541 1.00483 0.97280 0.86115 1.23511 0.97501 1.00175 0.96683 1.22030 0.84019 0.94480 0.99379 0.88241 1.57023 1.19579 1.22230 1.81990 1.22128 1.05357 0.79081 1.01216 1.01428 0.72742 0.72566 0.73493 1.93550 1.64922 1.53656 1.83305 1.93442 1.84866 1.57361 1.61002 1.29399 1.16301 1.07534 1.26075 1.24839 0.95639 1.00746 0.96012 1.21183 1.03351 0.88674 1.04938 1.84229 1.41084 1.06797 1.23323 1.24504 1.04598 1.02571 1.00235 1.20905 1.04194 0.90481 1.01444 1.18503 1.00527 0.93624 0.95536 1.26007 1.04742 0.83974 1.08286 1.86709 1.85354 1.24604 1.37982 0.94556 0.75219 0.90282 0.78426 1.23656 0.96866 0.99206 0.98145 1.20518 0.91253 0.99046 1.07461 0.92076 0.86863 0.91893 0.84732 0.84172 0.83714 0.90705 0.87784 0.91167 0.89938 0.87090 0.88741 0.87756 0.87344 0.89024 0.89314 0.89020 0.84207 0.77376 1.16059 1.18419 0.86482 0.87371 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.52 10.50 -92.44 -0.97 -2.49 16 3 C 0.11 0.40 6.69 22.51 0.15 0.55 16 4 C -0.22 -0.24 9.04 22.37 0.20 -0.04 16 5 C -0.09 0.11 10.04 22.25 0.22 0.33 16 6 C -0.16 0.43 8.52 22.28 0.19 0.62 16 7 C -0.03 0.06 5.29 -19.88 -0.11 -0.04 16 8 C -0.07 0.46 3.31 -11.01 -0.04 0.43 16 9 H 0.12 -1.03 5.50 -2.39 -0.01 -1.05 16 10 C -0.14 0.57 7.21 31.12 0.22 0.80 16 11 C 0.11 -0.42 3.52 45.58 0.16 -0.26 16 12 H 0.10 -0.26 3.87 -2.39 -0.01 -0.27 16 13 N -0.97 2.41 3.39 -513.45 -1.74 0.67 16 14 C 0.07 -0.49 8.69 127.77 1.11 0.62 16 15 S 2.71 14.01 5.33 -56.49 -0.30 13.71 16 16 O -0.96 -7.58 13.69 -128.00 -1.75 -9.34 16 17 O -0.98 -11.41 13.81 -128.00 -1.77 -13.18 16 18 C -0.69 -2.84 5.88 21.22 0.12 -2.72 16 19 C -0.05 -0.08 6.50 24.59 0.16 0.08 16 20 C -0.12 0.23 9.16 71.24 0.65 0.88 16 21 S 0.18 -0.01 23.31 -56.49 -1.32 -1.33 16 22 C -0.20 -0.41 6.12 24.59 0.15 -0.26 16 23 C -0.11 0.27 8.48 71.24 0.60 0.87 16 24 C -0.07 -0.32 4.28 -20.92 -0.09 -0.41 16 25 C -0.12 -0.65 2.58 71.24 0.18 -0.47 16 26 O -0.54 -4.25 12.78 -148.98 -1.90 -6.16 16 27 Si 0.72 -0.79 26.50 68.60 1.82 1.03 16 28 C -0.14 1.20 5.31 31.18 0.17 1.37 16 29 C -0.16 -0.26 9.65 22.36 0.22 -0.04 16 30 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 31 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.06 -0.27 7.66 -2.39 -0.02 -0.29 16 33 H 0.13 -0.26 6.30 -2.91 -0.02 -0.28 16 34 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 35 H 0.15 -1.04 6.72 -2.91 -0.02 -1.06 16 36 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.10 -0.52 7.62 -2.39 -0.02 -0.54 16 38 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.08 -0.74 6.49 -2.39 -0.02 -0.76 16 40 H 0.11 -1.35 4.83 -2.39 -0.01 -1.36 16 41 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.11 -0.24 4.60 -2.39 -0.01 -0.25 16 44 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.09 -0.31 6.33 -2.39 -0.02 -0.33 16 46 H 0.09 -0.31 4.87 -2.38 -0.01 -0.32 16 47 H 0.14 1.11 3.17 -2.39 -0.01 1.11 16 48 H 0.38 0.28 5.18 -74.06 -0.38 -0.10 16 49 H -0.24 0.33 5.22 99.48 0.52 0.85 16 50 H -0.26 -0.69 7.11 99.48 0.71 0.01 16 51 H 0.12 -1.28 5.92 -2.39 -0.01 -1.30 16 52 H 0.11 -1.29 7.35 -2.39 -0.02 -1.30 16 53 H 0.13 0.00 8.05 -2.91 -0.02 -0.03 16 Total: 0.00 -22.66 410.74 -2.08 -24.74 By element: Atomic # 1 Polarization: -11.47 SS G_CDS: 0.46 Total: -11.01 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.40 Total: 3.36 kcal Atomic # 7 Polarization: 2.41 SS G_CDS: -1.74 Total: 0.67 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -6.39 Total: -31.16 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 1.82 Total: 1.03 kcal Atomic # 16 Polarization: 14.00 SS G_CDS: -1.62 Total: 12.38 kcal Total: -22.66 -2.08 -24.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10860590_15065288.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.283 kcal (2) G-P(sol) polarization free energy of solvation -22.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds