Wall clock time and date at job start Mon Mar 8 2021 09:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86295 * 109.47459 * 2 1 4 4 C 1.50699 * 109.47021 * 239.99669 * 2 1 3 5 5 C 1.38240 * 120.00215 * 300.00528 * 4 2 1 6 6 C 1.38231 * 119.99895 * 179.97438 * 5 4 2 7 7 C 1.38238 * 120.00265 * 359.97438 * 6 5 4 8 8 S 1.76198 * 119.99939 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.40291 * 336.45978 * 8 7 6 10 10 O 1.42103 * 106.40151 * 203.53934 * 8 7 6 11 11 N 1.65600 * 107.21815 * 90.00005 * 8 7 6 12 12 C 1.46496 * 119.99627 * 65.00124 * 11 8 7 13 13 H 1.09000 * 112.91246 * 13.74793 * 12 11 8 14 14 C 1.53786 * 113.61518 * 145.00034 * 12 11 8 15 15 C 1.53781 * 87.17350 * 89.15486 * 14 12 11 16 16 H 1.09001 * 113.61695 * 139.93969 * 15 14 12 17 17 O 1.42895 * 113.61289 * 270.84487 * 15 14 12 18 18 C 1.53782 * 87.08260 * 25.39213 * 15 14 12 19 19 C 1.38229 * 119.99768 * 0.25633 * 7 6 5 20 20 C 1.38235 * 120.00222 * 359.47014 * 19 7 6 21 21 H 0.96694 * 114.00190 * 59.99882 * 1 2 3 22 22 H 1.08998 * 109.47275 * 120.00490 * 2 1 3 23 23 H 1.48499 * 110.00201 * 59.99938 * 3 2 1 24 24 H 1.48496 * 110.00083 * 181.32412 * 3 2 1 25 25 H 1.07995 * 119.99772 * 359.97031 * 5 4 2 26 26 H 1.08007 * 119.99959 * 179.97438 * 6 5 4 27 27 H 0.96997 * 120.00253 * 244.99619 * 11 8 7 28 28 H 1.09002 * 113.61357 * 334.56403 * 14 12 11 29 29 H 1.09002 * 113.61608 * 203.74565 * 14 12 11 30 30 H 0.96707 * 113.99942 * 180.02562 * 17 15 14 31 31 H 1.08997 * 113.61668 * 89.11298 * 18 15 14 32 32 H 1.08998 * 113.61674 * 219.93807 * 18 15 14 33 33 H 1.08000 * 119.99889 * 179.72251 * 19 7 6 34 34 H 1.07999 * 120.00054 * 180.27746 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5972 -2.0340 -1.4492 6 6 2.0576 -2.6854 -2.5781 7 6 2.8515 -2.0134 -3.4886 8 16 3.4388 -2.8441 -4.9272 9 8 3.4290 -4.2317 -4.6214 10 8 4.6056 -2.1483 -5.3441 11 7 2.3101 -2.6197 -6.1180 12 6 2.0518 -1.2748 -6.6382 13 1 2.8139 -0.5527 -6.3450 14 6 1.7234 -1.2479 -8.1404 15 6 0.2492 -1.4332 -7.7437 16 1 -0.4419 -0.8390 -8.3415 17 8 -0.1460 -2.8020 -7.6331 18 6 0.6120 -0.7861 -6.3967 19 6 3.1895 -0.6914 -3.2674 20 6 2.7245 -0.0382 -2.1414 21 1 -0.3933 0.4417 -0.7650 22 1 1.7923 -0.5139 0.8899 23 1 1.5616 2.4679 1.2085 24 1 3.5346 1.7701 -0.0322 25 1 0.9767 -2.5589 -0.7381 26 1 1.7969 -3.7196 -2.7488 27 1 1.8200 -3.3786 -6.4710 28 1 2.1364 -2.0919 -8.6928 29 1 1.9305 -0.2890 -8.6155 30 1 -1.0724 -2.9250 -7.3843 31 1 0.5155 0.2996 -6.3938 32 1 0.1266 -1.2564 -5.5415 33 1 3.8135 -0.1677 -3.9765 34 1 2.9849 0.9960 -1.9709 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10863996_13421422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:59:17 Heat of formation + Delta-G solvation = -97.288649 kcal Electronic energy + Delta-G solvation = -21152.513517 eV Core-core repulsion = 17758.965434 eV Total energy + Delta-G solvation = -3393.548083 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 286.075 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71138 -40.47544 -38.43999 -37.71206 -37.06842 -36.09698 -33.20524 -33.01680 -32.20996 -27.25101 -26.59939 -25.17175 -24.08448 -23.00796 -20.96677 -20.52579 -19.34630 -18.81205 -18.21115 -17.92215 -17.28651 -16.74437 -16.45703 -16.12659 -16.00644 -15.83295 -15.58043 -15.05372 -14.80805 -14.48234 -14.11378 -13.92821 -13.84632 -13.78652 -13.34853 -13.27470 -13.07156 -12.66316 -12.51528 -12.43499 -12.28661 -12.00972 -11.83725 -11.32610 -10.70927 -10.54232 -10.40302 -10.30664 -10.16496 -5.05405 -0.76614 -0.39503 0.17637 1.22521 1.59923 1.87189 1.93578 2.31930 2.68204 3.18236 3.24644 3.39538 3.49224 3.59882 3.75726 3.77132 3.82475 3.93889 4.17155 4.19599 4.25609 4.35404 4.37150 4.58071 4.81141 4.82691 4.87202 4.93143 4.96984 4.99135 5.10406 5.15198 5.23094 5.42729 5.68393 6.07543 6.69519 6.94521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.082 4.082 3 Si 0.783 3.217 4 C -0.063 4.063 5 C -0.122 4.122 6 C -0.027 4.027 7 C -0.674 4.674 8 S 2.709 3.291 9 O -0.993 6.993 10 O -0.984 6.984 11 N -1.085 6.085 12 C 0.113 3.887 13 H 0.115 0.885 14 C -0.146 4.146 15 C 0.074 3.926 16 H 0.085 0.915 17 O -0.573 6.573 18 C -0.176 4.176 19 C -0.020 4.020 20 C -0.137 4.137 21 H 0.398 0.602 22 H 0.113 0.887 23 H -0.298 1.298 24 H -0.284 1.284 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.427 0.573 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.397 0.603 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 6.634 -2.509 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.192 4.192 3 Si 0.688 3.312 4 C -0.064 4.064 5 C -0.140 4.140 6 C -0.047 4.047 7 C -0.763 4.763 8 S 2.801 3.199 9 O -0.984 6.984 10 O -0.973 6.973 11 N -0.847 5.847 12 C 0.006 3.994 13 H 0.133 0.867 14 C -0.185 4.185 15 C 0.015 3.985 16 H 0.103 0.897 17 O -0.381 6.381 18 C -0.216 4.216 19 C -0.039 4.039 20 C -0.156 4.156 21 H 0.248 0.752 22 H 0.130 0.870 23 H -0.226 1.226 24 H -0.211 1.211 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.265 0.735 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.247 0.753 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.177 0.823 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.881 6.470 -1.735 7.742 hybrid contribution -1.039 -0.852 0.791 1.560 sum -4.920 5.618 -0.944 7.527 Atomic orbital electron populations 1.86502 1.16565 1.82152 1.50584 1.25351 0.85789 1.11232 0.96838 0.93703 0.77866 0.74584 0.85023 1.20856 0.94899 0.94781 0.95864 1.21293 1.00363 0.94534 0.97848 1.21101 0.91480 0.99781 0.92294 1.30765 1.15915 1.07890 1.21712 1.01149 0.73169 0.72330 0.73268 1.93560 1.86949 1.32809 1.85044 1.93565 1.46425 1.75662 1.81690 1.55093 1.60208 1.15913 1.53463 1.21931 0.98813 0.82449 0.96249 0.86682 1.23571 0.94966 1.04340 0.95623 1.22831 0.96311 0.82813 0.96516 0.89728 1.86360 1.34365 1.25037 1.92344 1.24197 0.95514 1.02987 0.98853 1.21163 0.94006 0.91573 0.97183 1.21392 0.98732 1.01050 0.94378 0.75216 0.86982 1.22619 1.21139 0.84085 0.83825 0.73531 0.91409 0.85246 0.75270 0.85877 0.90356 0.82251 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.73 12.77 -148.98 -1.90 -0.18 16 2 C -0.08 0.28 2.82 71.24 0.20 0.48 16 3 Si 0.78 -3.98 29.79 68.60 2.04 -1.94 16 4 C -0.06 0.15 5.39 -19.86 -0.11 0.04 16 5 C -0.12 0.04 9.61 22.27 0.21 0.25 16 6 C -0.03 -0.03 9.52 22.27 0.21 0.18 16 7 C -0.67 -0.83 5.95 22.27 0.13 -0.70 16 8 S 2.71 12.19 5.71 -56.49 -0.32 11.87 16 9 O -0.99 -11.40 17.28 -128.00 -2.21 -13.61 16 10 O -0.98 -9.38 16.80 -128.00 -2.15 -11.53 16 11 N -1.09 0.59 5.68 -166.94 -0.95 -0.36 16 12 C 0.11 -0.52 4.52 45.58 0.21 -0.31 16 13 H 0.12 -0.78 7.77 -2.39 -0.02 -0.80 16 14 C -0.15 0.75 7.69 31.12 0.24 0.99 16 15 C 0.07 -0.49 5.28 31.12 0.16 -0.33 16 16 H 0.08 -0.80 8.14 -2.39 -0.02 -0.81 16 17 O -0.57 2.25 12.19 -148.98 -1.82 0.43 16 18 C -0.18 1.52 7.72 31.18 0.24 1.76 16 19 C -0.02 0.04 9.52 22.27 0.21 0.25 16 20 C -0.14 0.53 8.67 22.27 0.19 0.72 16 21 H 0.40 -4.64 8.70 -74.06 -0.64 -5.28 16 22 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 23 H -0.30 -0.85 7.11 99.48 0.71 -0.14 16 24 H -0.28 0.04 7.11 99.48 0.71 0.74 16 25 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 26 H 0.14 0.03 7.62 -2.91 -0.02 0.01 16 27 H 0.43 -0.13 7.54 -96.75 -0.73 -0.86 16 28 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.13 -1.25 8.14 -2.39 -0.02 -1.26 16 30 H 0.40 -4.37 9.12 -74.05 -0.68 -5.04 16 31 H 0.12 -1.59 8.14 -2.39 -0.02 -1.61 16 32 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.16 -0.84 7.61 -2.91 -0.02 -0.86 16 34 H 0.16 -1.41 4.88 -2.91 -0.01 -1.42 16 Total: 0.00 -24.29 301.09 -6.25 -30.55 By element: Atomic # 1 Polarization: -17.71 SS G_CDS: -0.85 Total: -18.57 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 1.91 Total: 3.33 kcal Atomic # 7 Polarization: 0.59 SS G_CDS: -0.95 Total: -0.36 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -8.08 Total: -24.89 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 2.04 Total: -1.94 kcal Atomic # 16 Polarization: 12.19 SS G_CDS: -0.32 Total: 11.87 kcal Total: -24.29 -6.25 -30.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10863996_13421422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.742 kcal (2) G-P(sol) polarization free energy of solvation -24.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds