Wall clock time and date at job start Mon Mar 8 2021 09:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47001 * 2 1 4 4 C 1.50697 * 109.47429 * 239.99843 * 2 1 3 5 5 C 1.33385 * 125.20046 * 313.22827 * 4 2 1 6 6 S 1.76201 * 122.54493 * 0.02562 * 5 4 2 7 7 O 1.42097 * 106.40460 * 180.44739 * 6 5 4 8 8 O 1.42104 * 106.39901 * 313.36455 * 6 5 4 9 9 N 1.65601 * 107.21652 * 66.90104 * 6 5 4 10 10 C 1.46509 * 119.99874 * 65.67821 * 9 6 5 11 11 H 1.09001 * 112.84422 * 345.21419 * 10 9 6 12 12 C 1.53780 * 113.61098 * 116.40796 * 10 9 6 13 13 C 1.54051 * 86.98616 * 89.16264 * 12 10 9 14 14 H 1.08998 * 113.62350 * 139.97414 * 13 12 10 15 15 O 1.42901 * 113.69080 * 270.87058 * 13 12 10 16 16 C 1.53771 * 113.61169 * 214.01626 * 10 9 6 17 17 C 1.38430 * 114.91845 * 179.79372 * 5 4 2 18 18 C 1.33391 * 114.92076 * 0.42734 * 17 5 4 19 19 S 1.75880 * 125.20258 * 133.25498 * 4 2 1 20 20 H 0.96703 * 113.99415 * 60.73392 * 1 2 3 21 21 H 1.08999 * 109.46621 * 119.99474 * 2 1 3 22 22 H 1.48497 * 109.99984 * 298.67814 * 3 2 1 23 23 H 1.48505 * 109.99837 * 59.99996 * 3 2 1 24 24 H 0.97001 * 120.00301 * 245.67263 * 9 6 5 25 25 H 1.09003 * 113.60887 * 203.66500 * 12 10 9 26 26 H 1.08995 * 113.61702 * 334.56920 * 12 10 9 27 27 H 0.96694 * 114.00051 * 277.52914 * 15 13 12 28 28 H 1.09000 * 113.61736 * 25.43819 * 16 10 9 29 29 H 1.09007 * 113.61486 * 156.33604 * 16 10 9 30 30 H 1.07999 * 122.53974 * 180.27603 * 17 5 4 31 31 H 1.07997 * 125.20423 * 179.85470 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.4840 -1.8851 -1.6766 6 16 0.2080 -2.7854 -0.8604 7 8 0.0122 -3.9750 -1.6125 8 8 0.5380 -2.7852 0.5218 9 7 -1.1858 -1.9035 -1.0086 10 6 -1.7857 -1.6980 -2.3293 11 1 -1.1063 -1.9434 -3.1456 12 6 -3.1801 -2.3294 -2.4775 13 6 -3.7495 -0.9976 -1.9527 14 1 -4.6566 -0.6780 -2.4658 15 8 -3.8692 -0.9453 -0.5297 16 6 -2.4714 -0.3309 -2.4884 17 6 2.0945 -2.3409 -2.8323 18 6 3.0439 -1.5407 -3.3196 19 16 3.1979 -0.1178 -2.2972 20 1 -0.3932 0.4319 -0.7707 21 1 1.7923 -0.5138 0.8900 22 1 1.5879 2.4585 -1.2242 23 1 1.5614 2.4679 1.2085 24 1 -1.6052 -1.5231 -0.2209 25 1 -3.4543 -2.5447 -3.5102 26 1 -3.3509 -3.1727 -1.8084 27 1 -4.6710 -1.3630 -0.1868 28 1 -2.0704 0.4382 -1.8281 29 1 -2.5523 -0.0008 -3.5241 30 1 1.8244 -3.2749 -3.3024 31 1 3.6259 -1.7346 -4.2084 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10863996_14772022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:59:22 Heat of formation + Delta-G solvation = -73.654205 kcal Electronic energy + Delta-G solvation = -20785.604905 eV Core-core repulsion = 17482.233935 eV Total energy + Delta-G solvation = -3303.370970 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.032 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.71879 -39.68310 -38.19933 -37.48438 -36.63684 -36.18798 -33.14092 -31.85073 -27.53892 -26.86113 -25.31190 -24.38831 -21.77206 -20.93795 -20.01382 -19.40455 -18.80708 -18.28166 -17.85169 -17.06193 -16.89899 -16.59384 -16.18766 -15.84475 -15.53657 -15.21346 -15.06293 -14.21743 -14.10910 -14.03488 -13.96567 -13.83558 -12.99225 -12.96961 -12.84744 -12.80993 -12.68678 -12.54941 -12.43620 -12.22703 -11.60856 -11.52181 -11.09051 -10.75245 -10.37311 -10.15785 -9.80956 -5.23748 -0.61048 -0.43214 0.33170 0.59984 1.00226 1.12679 1.42366 1.76040 2.14373 2.82533 2.95145 3.04995 3.25750 3.39677 3.55416 3.63792 3.72553 3.93560 4.01893 4.16912 4.25773 4.41681 4.53829 4.54804 4.67471 4.74263 4.88577 4.89346 4.96812 5.11734 5.26310 6.06198 6.27145 6.59597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.514 6.514 2 C -0.070 4.070 3 Si 0.671 3.329 4 C -0.098 4.098 5 C -0.668 4.668 6 S 2.715 3.285 7 O -0.960 6.960 8 O -0.948 6.948 9 N -1.080 6.080 10 C 0.133 3.867 11 H 0.099 0.901 12 C -0.185 4.185 13 C 0.080 3.920 14 H 0.070 0.930 15 O -0.550 6.550 16 C -0.145 4.145 17 C -0.077 4.077 18 C -0.211 4.211 19 S 0.156 5.844 20 H 0.377 0.623 21 H 0.152 0.848 22 H -0.241 1.241 23 H -0.229 1.229 24 H 0.431 0.569 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.385 0.615 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.158 0.842 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 4.027 -3.964 5.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.322 6.322 2 C -0.181 4.181 3 Si 0.568 3.432 4 C -0.219 4.219 5 C -0.767 4.767 6 S 2.801 3.199 7 O -0.950 6.950 8 O -0.938 6.938 9 N -0.844 5.844 10 C 0.024 3.976 11 H 0.117 0.883 12 C -0.225 4.225 13 C 0.020 3.980 14 H 0.088 0.912 15 O -0.356 6.356 16 C -0.184 4.184 17 C -0.105 4.105 18 C -0.347 4.347 19 S 0.420 5.580 20 H 0.227 0.773 21 H 0.169 0.831 22 H -0.164 1.164 23 H -0.151 1.151 24 H 0.272 0.728 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.233 0.767 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.176 0.824 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.428 5.317 -3.268 6.402 hybrid contribution -2.159 -1.087 -0.737 2.528 sum -0.731 4.230 -4.005 5.871 Atomic orbital electron populations 1.86728 1.16318 1.79985 1.49199 1.25017 0.84627 1.11737 0.96760 0.95059 0.91201 0.73742 0.83222 1.25024 0.99744 0.97046 1.00078 1.30011 1.24713 1.09895 1.12117 1.01434 0.72397 0.72841 0.73237 1.93586 1.85192 1.42690 1.73538 1.93595 1.83252 1.86252 1.30686 1.55406 1.41223 1.73242 1.14490 1.21503 0.95107 0.96531 0.84451 0.88288 1.24183 0.96558 0.98762 1.02964 1.22748 0.97490 0.95770 0.81951 0.91179 1.86394 1.47895 1.81708 1.19616 1.23526 0.95622 0.97042 1.02162 1.19781 0.95735 1.01244 0.93790 1.25924 1.04856 0.98549 1.05326 1.84249 1.34428 1.21796 1.17555 0.77253 0.83051 1.16438 1.15125 0.72833 0.88162 0.89791 0.76700 0.90067 0.87442 0.82446 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 0.00 8.62 -39.03 -0.34 -0.34 16 2 C -0.07 0.01 2.07 36.00 0.07 0.09 16 3 Si 0.67 -1.03 31.07 -169.99 -5.28 -6.31 16 4 C -0.10 -0.03 5.74 -36.01 -0.21 -0.24 16 5 C -0.67 -0.94 5.78 -41.21 -0.24 -1.18 16 6 S 2.72 8.25 4.88 -107.50 -0.53 7.72 16 7 O -0.96 -5.33 17.09 -57.17 -0.98 -6.31 16 8 O -0.95 -5.67 16.65 -60.77 -1.01 -6.68 16 9 N -1.08 -0.42 3.68 -4.20 -0.02 -0.43 16 10 C 0.13 -0.17 4.42 -67.12 -0.30 -0.47 16 11 H 0.10 -0.21 8.05 -51.93 -0.42 -0.63 16 12 C -0.18 0.30 7.73 -25.78 -0.20 0.10 16 13 C 0.08 -0.17 5.28 -25.77 -0.14 -0.31 16 14 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 15 O -0.55 0.62 12.19 -35.23 -0.43 0.19 16 16 C -0.14 0.40 7.69 -25.92 -0.20 0.20 16 17 C -0.08 -0.05 9.70 -41.20 -0.40 -0.45 16 18 C -0.21 0.17 11.23 29.04 0.33 0.49 16 19 S 0.16 -0.18 20.70 -107.50 -2.22 -2.41 16 20 H 0.38 -0.94 6.80 45.56 0.31 -0.63 16 21 H 0.15 0.00 7.72 -51.93 -0.40 -0.40 16 22 H -0.24 0.07 7.11 56.52 0.40 0.47 16 23 H -0.23 -0.23 7.11 56.52 0.40 0.17 16 24 H 0.43 0.24 6.43 -34.47 -0.22 0.02 16 25 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 26 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 27 H 0.38 -1.67 9.12 45.56 0.42 -1.25 16 28 H 0.08 -0.22 6.57 -51.93 -0.34 -0.56 16 29 H 0.11 -0.47 8.14 -51.93 -0.42 -0.90 16 30 H 0.16 0.01 7.74 -52.49 -0.41 -0.40 16 31 H 0.18 -0.54 8.06 -52.49 -0.42 -0.96 16 LS Contribution 281.79 15.07 4.25 4.25 Total: 0.00 -8.77 281.79 -10.20 -18.97 By element: Atomic # 1 Polarization: -4.51 SS G_CDS: -2.37 Total: -6.89 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.28 Total: -1.77 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -0.02 Total: -0.43 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -2.75 Total: -13.14 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.28 Total: -6.31 kcal Atomic # 16 Polarization: 8.07 SS G_CDS: -2.75 Total: 5.32 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -8.77 -10.20 -18.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10863996_14772022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.680 kcal (2) G-P(sol) polarization free energy of solvation -8.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds