Wall clock time and date at job start Mon Mar 8 2021 09:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33383 * 125.20511 * 2 1 4 4 C 1.50701 * 122.53910 * 0.05804 * 3 2 1 5 5 O 1.42894 * 109.47279 * 64.58080 * 4 3 2 6 6 Si 1.86304 * 109.46695 * 304.58464 * 4 3 2 7 7 C 1.38426 * 114.92370 * 180.02562 * 3 2 1 8 8 S 1.76199 * 122.54204 * 179.97438 * 7 3 2 9 9 O 1.42098 * 106.40430 * 162.66370 * 8 7 3 10 10 O 1.42103 * 106.39827 * 29.74259 * 8 7 3 11 11 N 1.65598 * 107.21705 * 276.20836 * 8 7 3 12 12 C 1.46498 * 120.00343 * 65.00077 * 11 8 7 13 13 H 1.08999 * 112.84689 * 344.66439 * 12 11 8 14 14 C 1.53782 * 113.69247 * 115.93452 * 12 11 8 15 15 C 1.53779 * 87.08281 * 89.12683 * 14 12 11 16 16 H 1.09000 * 113.61391 * 139.97849 * 15 14 12 17 17 O 1.42900 * 113.68874 * 270.87423 * 15 14 12 18 18 C 1.53780 * 113.61322 * 213.46990 * 12 11 8 19 19 C 1.33390 * 114.91845 * 0.25043 * 7 3 2 20 20 C 1.50704 * 125.20144 * 179.75526 * 19 7 3 21 21 S 1.75882 * 109.59561 * 359.63179 * 19 7 3 22 22 H 1.09001 * 109.47431 * 95.23458 * 1 2 3 23 23 H 1.09005 * 109.47432 * 215.23119 * 1 2 3 24 24 H 1.09000 * 109.47047 * 335.22824 * 1 2 3 25 25 H 1.08999 * 109.46951 * 184.59192 * 4 3 2 26 26 H 0.96698 * 113.99982 * 179.97438 * 5 4 3 27 27 H 1.48501 * 110.00105 * 60.00505 * 6 4 3 28 28 H 1.48506 * 109.99699 * 181.31641 * 6 4 3 29 29 H 0.97001 * 119.99690 * 244.99459 * 11 8 7 30 30 H 1.09008 * 113.61183 * 203.67820 * 14 12 11 31 31 H 1.09000 * 113.61183 * 334.57571 * 14 12 11 32 32 H 0.96704 * 113.99896 * 277.53664 * 17 15 14 33 33 H 1.08999 * 113.61862 * 25.34231 * 18 12 11 34 34 H 1.09003 * 113.61566 * 156.25430 * 18 12 11 35 35 H 1.08998 * 109.47006 * 84.16842 * 20 19 7 36 36 H 1.08997 * 109.46740 * 204.16946 * 20 19 7 37 37 H 1.09002 * 109.46819 * 324.16590 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4846 0.0013 5 8 0.9906 2.7057 1.2188 6 14 0.5460 2.6825 -1.4438 7 6 3.6380 0.8428 -0.0006 8 16 4.8357 2.1351 -0.0013 9 8 6.0630 1.5451 0.4044 10 8 4.2405 3.2341 0.6750 11 7 5.0427 2.6106 -1.5740 12 6 3.9352 3.2340 -2.3027 13 1 2.9723 3.0916 -1.8120 14 6 4.2078 4.6907 -2.7133 15 6 4.8147 4.1290 -4.0099 16 1 4.5618 4.7090 -4.8974 17 8 6.2114 3.8429 -3.9132 18 6 3.9178 2.8970 -3.8030 19 6 3.9750 -0.4478 -0.0063 20 6 5.3860 -0.9771 -0.0134 21 16 2.5209 -1.4373 -0.0008 22 1 -0.3634 -0.0938 -1.0234 23 1 -0.3634 -0.8394 0.5928 24 1 -0.3633 0.9331 0.4306 25 1 2.5155 3.2089 -0.0812 26 1 0.5955 3.5856 1.2887 27 1 -0.5635 1.7005 -1.3431 28 1 0.0009 4.0635 -1.4721 29 1 5.8973 2.4765 -2.0127 30 1 3.3023 5.2762 -2.8729 31 1 4.9327 5.1958 -2.0750 32 1 6.7807 4.6138 -4.0423 33 1 4.4085 1.9542 -4.0445 34 1 2.9330 2.9922 -4.2605 35 1 5.7667 -1.0105 1.0074 36 1 5.3952 -1.9811 -0.4377 37 1 6.0166 -0.3226 -0.6151 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10863996_15065288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:59:27 Heat of formation + Delta-G solvation = -70.959686 kcal Electronic energy + Delta-G solvation = -24831.367179 eV Core-core repulsion = 21217.037814 eV Total energy + Delta-G solvation = -3614.329365 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.80097 -40.13156 -38.39898 -37.20684 -36.81441 -36.27599 -34.29900 -33.29987 -30.91507 -28.15396 -26.85961 -25.96354 -25.30753 -23.08089 -21.06847 -20.70879 -19.85049 -19.34233 -18.54460 -18.23786 -17.99064 -17.30376 -16.96173 -16.35417 -16.24872 -15.82844 -15.55044 -15.17780 -15.07753 -14.56781 -14.41839 -14.21241 -14.09995 -13.96051 -13.92551 -13.64476 -13.35377 -13.11545 -13.08124 -12.92679 -12.76792 -12.69537 -12.52664 -12.46778 -12.06713 -11.62433 -11.50451 -11.39874 -10.77195 -10.54055 -10.43480 -9.91752 -9.37719 -5.10814 -0.67849 -0.35210 0.43767 0.73363 0.90465 1.21532 1.46752 1.87831 2.06257 2.73488 2.96157 3.26166 3.32082 3.36043 3.53932 3.65428 3.69915 3.76368 3.87988 4.06618 4.10500 4.16768 4.28380 4.48318 4.52189 4.55625 4.56435 4.60199 4.72086 4.76055 4.88673 4.93337 4.94915 5.02620 5.11706 5.18423 5.27703 6.02757 6.48542 6.57919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.170 4.170 3 C -0.032 4.032 4 C -0.086 4.086 5 O -0.522 6.522 6 Si 0.636 3.364 7 C -0.681 4.681 8 S 2.704 3.296 9 O -0.951 6.951 10 O -0.945 6.945 11 N -1.090 6.090 12 C 0.129 3.871 13 H 0.094 0.906 14 C -0.188 4.188 15 C 0.079 3.921 16 H 0.074 0.926 17 O -0.552 6.552 18 C -0.143 4.143 19 C -0.047 4.047 20 C -0.111 4.111 21 S 0.158 5.842 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.381 0.619 27 H -0.222 1.222 28 H -0.248 1.248 29 H 0.428 0.572 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.385 0.615 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 0.521 -6.645 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.288 4.288 3 C -0.043 4.043 4 C -0.197 4.197 5 O -0.329 6.329 6 Si 0.534 3.466 7 C -0.781 4.781 8 S 2.792 3.208 9 O -0.941 6.941 10 O -0.935 6.935 11 N -0.851 5.851 12 C 0.021 3.979 13 H 0.111 0.889 14 C -0.228 4.228 15 C 0.020 3.980 16 H 0.092 0.908 17 O -0.358 6.358 18 C -0.182 4.182 19 C -0.169 4.169 20 C -0.169 4.169 21 S 0.424 5.576 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.229 0.771 27 H -0.146 1.146 28 H -0.172 1.172 29 H 0.266 0.734 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.006 -1.759 -5.850 6.430 hybrid contribution -0.050 2.101 0.601 2.186 sum -2.056 0.341 -5.249 5.648 Atomic orbital electron populations 1.20779 0.87354 1.04106 1.03020 1.24343 1.00207 0.95036 1.09232 1.17428 0.89902 0.94453 1.02474 1.25239 1.02640 0.95583 0.96215 1.86555 1.71868 1.38244 1.36268 0.96048 0.83401 0.82339 0.84839 1.29418 1.11618 1.13498 1.23520 1.01680 0.73077 0.73588 0.72476 1.93604 1.42282 1.78246 1.80006 1.93545 1.77889 1.50737 1.71293 1.55338 1.21540 1.75134 1.33053 1.21702 0.88464 0.94133 0.93644 0.88896 1.24203 1.03014 0.96648 0.98896 1.22719 0.81842 0.97016 0.96424 0.90806 1.86375 1.15736 1.38819 1.94912 1.23524 1.00483 0.99489 0.94692 1.24558 1.00734 0.94872 0.96692 1.20925 0.88127 1.02255 1.05604 1.84365 0.95192 1.08390 1.69640 0.89997 0.90765 0.89447 0.88007 0.77109 1.14570 1.17168 0.73432 0.87820 0.89616 0.76654 0.89184 0.86881 0.88178 0.90081 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.09 8.15 36.00 0.29 0.21 16 2 C -0.17 -0.37 6.09 -36.01 -0.22 -0.58 16 3 C -0.03 -0.09 4.43 -106.25 -0.47 -0.56 16 4 C -0.09 -0.17 1.82 36.01 0.07 -0.10 16 5 O -0.52 -1.47 11.73 -35.23 -0.41 -1.89 16 6 Si 0.64 -0.42 27.82 -169.99 -4.73 -5.15 16 7 C -0.68 -1.77 5.86 -41.21 -0.24 -2.01 16 8 S 2.70 7.41 5.33 -107.50 -0.57 6.84 16 9 O -0.95 -4.25 14.85 -57.17 -0.85 -5.09 16 10 O -0.94 -4.95 14.66 -57.17 -0.84 -5.79 16 11 N -1.09 0.33 5.68 -4.20 -0.02 0.31 16 12 C 0.13 -0.21 4.32 -67.12 -0.29 -0.50 16 13 H 0.09 -0.17 2.13 -51.93 -0.11 -0.28 16 14 C -0.19 0.48 7.72 -25.92 -0.20 0.28 16 15 C 0.08 -0.25 5.27 -25.92 -0.14 -0.38 16 16 H 0.07 -0.33 8.14 -51.93 -0.42 -0.75 16 17 O -0.55 1.26 12.20 -35.23 -0.43 0.83 16 18 C -0.14 0.48 7.69 -25.92 -0.20 0.28 16 19 C -0.05 -0.08 6.50 -36.00 -0.23 -0.31 16 20 C -0.11 -0.02 8.88 36.01 0.32 0.30 16 21 S 0.16 0.16 23.31 -107.50 -2.51 -2.35 16 22 H 0.08 -0.03 6.94 -51.93 -0.36 -0.39 16 23 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 24 H 0.09 0.14 5.21 -51.93 -0.27 -0.13 16 25 H 0.10 0.20 3.25 -51.93 -0.17 0.04 16 26 H 0.38 -0.42 8.74 45.56 0.40 -0.02 16 27 H -0.22 -0.07 4.65 56.52 0.26 0.19 16 28 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 29 H 0.43 -0.48 7.57 -34.47 -0.26 -0.74 16 30 H 0.10 -0.44 8.14 -51.92 -0.42 -0.86 16 31 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.39 -2.15 9.12 45.56 0.42 -1.73 16 33 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.11 -0.65 8.14 -51.93 -0.42 -1.07 16 35 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 37 H 0.10 -0.01 6.44 -51.93 -0.33 -0.34 16 LS Contribution 308.61 15.07 4.65 4.65 Total: 0.00 -9.04 308.61 -10.43 -19.47 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -3.41 Total: -8.46 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.31 Total: -3.38 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -0.02 Total: 0.31 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -2.53 Total: -11.94 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: -4.73 Total: -5.15 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -3.08 Total: 4.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -9.04 -10.43 -19.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10863996_15065288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.488 kcal (2) G-P(sol) polarization free energy of solvation -9.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds