Wall clock time and date at job start Mon Mar 8 2021 12:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47208 * 2 1 4 4 O 1.42906 * 109.46902 * 120.00122 * 2 1 3 5 5 C 1.42896 * 114.00003 * 89.99992 * 4 2 1 6 6 H 1.08998 * 112.85474 * 18.80431 * 5 4 2 7 7 C 1.53785 * 113.61343 * 150.00197 * 5 4 2 8 8 C 1.53774 * 87.08528 * 139.97959 * 7 5 4 9 9 H 1.09002 * 113.61646 * 89.19765 * 8 7 5 10 10 N 1.46496 * 113.61750 * 220.02138 * 8 7 5 11 11 S 1.65595 * 120.00300 * 214.99930 * 10 8 7 12 12 O 1.42103 * 106.40054 * 311.45634 * 11 10 8 13 13 O 1.42100 * 106.40404 * 178.53676 * 11 10 8 14 14 C 1.76204 * 107.21991 * 64.99386 * 11 10 8 15 15 C 1.38228 * 120.00120 * 270.28621 * 14 11 10 16 16 C 1.38238 * 120.00120 * 180.23453 * 15 14 11 17 17 C 1.38234 * 119.99675 * 359.47825 * 16 15 14 18 18 C 1.50703 * 120.00257 * 180.27927 * 17 16 15 19 19 O 1.42908 * 109.46633 * 65.00233 * 18 17 16 20 20 Si 1.86297 * 109.47442 * 185.00250 * 18 17 16 21 21 C 1.38234 * 120.00240 * 0.26327 * 17 16 15 22 22 C 1.38234 * 119.99818 * 89.99898 * 14 11 10 23 23 C 1.53779 * 113.61424 * 247.49463 * 5 4 2 24 24 H 1.08997 * 109.46640 * 60.00212 * 1 2 3 25 25 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47049 * 299.99829 * 1 2 3 27 27 H 1.08999 * 109.47294 * 239.99472 * 2 1 3 28 28 H 1.09002 * 109.46760 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47147 * 299.99478 * 3 2 1 30 30 H 1.08995 * 109.46976 * 60.00126 * 3 2 1 31 31 H 1.08998 * 113.61574 * 25.42708 * 7 5 4 32 32 H 1.08999 * 113.69205 * 254.54015 * 7 5 4 33 33 H 0.97005 * 119.99774 * 34.99181 * 10 8 7 34 34 H 1.08004 * 120.00256 * 359.97438 * 15 14 11 35 35 H 1.08002 * 120.00519 * 179.76445 * 16 15 14 36 36 H 1.09000 * 109.46946 * 305.01070 * 18 17 16 37 37 H 0.96707 * 113.99859 * 180.02562 * 19 18 17 38 38 H 1.48494 * 109.99952 * 178.68263 * 20 18 17 39 39 H 1.48500 * 109.99918 * 300.00446 * 20 18 17 40 40 H 1.07997 * 120.00460 * 180.02562 * 21 17 16 41 41 H 1.08001 * 120.00310 * 0.02562 * 22 14 11 42 42 H 1.09002 * 113.61770 * 105.47248 * 23 5 4 43 43 H 1.09005 * 113.61421 * 334.56709 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9886 6 1 2.2731 -2.3658 -0.0602 7 6 3.3193 -2.6620 1.8669 8 6 2.4061 -3.8800 2.0842 9 1 2.5358 -4.6619 1.3359 10 7 2.4310 -4.3951 3.4554 11 16 2.2960 -6.0223 3.7313 12 8 1.1871 -6.4688 2.9630 13 8 2.3888 -6.1998 5.1381 14 6 3.7228 -6.7891 3.0378 15 6 3.7089 -7.2134 1.7223 16 6 4.8266 -7.8194 1.1797 17 6 5.9619 -7.9913 1.9494 18 6 7.1826 -8.6463 1.3561 19 8 7.7050 -7.8224 0.3118 20 14 8.4752 -8.8653 2.6797 21 6 5.9776 -7.5622 3.2634 22 6 4.8580 -6.9610 3.8075 23 6 1.2204 -2.9429 1.7995 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.5058 -2.0886 2.7749 32 1 4.2318 -2.8929 1.3174 33 1 2.5267 -3.7829 4.2017 34 1 2.8234 -7.0753 1.1196 35 1 4.8145 -8.1544 0.1530 36 1 6.9107 -9.6201 0.9489 37 1 8.4934 -8.1831 -0.1166 38 1 9.6717 -9.5390 2.1145 39 1 8.8543 -7.5446 3.2428 40 1 6.8647 -7.6961 3.8646 41 1 4.8704 -6.6257 4.8341 42 1 0.4378 -3.4004 1.1944 43 1 0.8331 -2.4463 2.6892 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10905402_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:26:43 Heat of formation + Delta-G solvation = -97.315127 kcal Electronic energy + Delta-G solvation = -26160.592216 eV Core-core repulsion = 22300.430128 eV Total energy + Delta-G solvation = -3860.162088 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70547 -40.60350 -38.47083 -38.08630 -37.82853 -37.04494 -34.21161 -33.18382 -32.63783 -32.21537 -28.14096 -27.25294 -26.65881 -25.00986 -24.09268 -22.84562 -22.30709 -21.18833 -20.64062 -19.29770 -18.65500 -18.49117 -18.15590 -17.21223 -16.95643 -16.71857 -16.41879 -16.01388 -15.77762 -15.59931 -15.38991 -15.26405 -14.63723 -14.40812 -14.16755 -14.03640 -13.96890 -13.80397 -13.71415 -13.43267 -13.31828 -13.23958 -13.13490 -13.05801 -12.92269 -12.76869 -12.44758 -12.24116 -12.00257 -11.91067 -11.80022 -11.67153 -11.57241 -10.68680 -10.50289 -10.38686 -10.33406 -10.14488 -4.97124 -0.76815 -0.39130 0.18440 1.20587 1.54534 1.83920 1.88896 2.28067 2.66881 2.78412 3.19833 3.22906 3.47108 3.54225 3.64133 3.75216 3.80923 3.83090 3.84364 3.99432 4.11995 4.16006 4.17412 4.26523 4.29635 4.36626 4.45455 4.59396 4.73261 4.74543 4.80563 4.83125 4.86955 4.91945 4.92748 4.93880 4.96681 5.02556 5.05243 5.25002 5.27811 5.31501 5.37781 5.68543 5.96282 6.40205 6.50159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.151 4.151 4 O -0.384 6.384 5 C 0.060 3.940 6 H 0.107 0.893 7 C -0.139 4.139 8 C 0.127 3.873 9 H 0.129 0.871 10 N -1.092 6.092 11 S 2.710 3.290 12 O -0.980 6.980 13 O -0.985 6.985 14 C -0.678 4.678 15 C -0.029 4.029 16 C -0.120 4.120 17 C -0.026 4.026 18 C -0.091 4.091 19 O -0.554 6.554 20 Si 0.756 3.244 21 C -0.144 4.144 22 C -0.021 4.021 23 C -0.169 4.169 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.429 0.571 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.399 0.601 38 H -0.283 1.283 39 H -0.294 1.294 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.082 0.918 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -0.716 -3.947 5.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.017 3.983 3 C -0.209 4.209 4 O -0.304 6.304 5 C 0.002 3.998 6 H 0.125 0.875 7 C -0.179 4.179 8 C 0.019 3.981 9 H 0.146 0.854 10 N -0.853 5.853 11 S 2.801 3.199 12 O -0.970 6.970 13 O -0.975 6.975 14 C -0.766 4.766 15 C -0.048 4.048 16 C -0.138 4.138 17 C -0.027 4.027 18 C -0.200 4.200 19 O -0.364 6.364 20 Si 0.661 3.339 21 C -0.162 4.162 22 C -0.041 4.041 23 C -0.209 4.209 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.266 0.734 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.123 0.877 37 H 0.250 0.750 38 H -0.210 1.210 39 H -0.221 1.221 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.100 0.900 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.966 -0.621 -3.052 4.301 hybrid contribution 1.069 0.388 -1.236 1.680 sum 4.035 -0.233 -4.288 5.893 Atomic orbital electron populations 1.22317 0.95688 1.02473 1.02674 1.22337 0.93988 0.94098 0.87895 1.21895 1.01619 0.94489 1.02866 1.87964 1.85823 1.20103 1.36492 1.23674 0.96226 0.80521 0.99399 0.87504 1.23640 0.97784 0.95108 1.01323 1.22145 0.97565 0.96072 0.82286 0.85375 1.55271 1.90490 1.25134 1.14401 1.01216 0.73660 0.72639 0.72372 1.93577 1.49699 1.80921 1.72783 1.93571 1.87486 1.85472 1.30992 1.30834 1.19690 1.20084 1.05999 1.21208 0.98884 0.92167 0.92516 1.21371 0.92190 0.99266 1.01016 1.19887 0.94616 0.94436 0.93729 1.25064 1.00047 0.96363 0.98543 1.86528 1.49193 1.50002 1.50683 0.94053 0.76836 0.81311 0.81660 1.21372 0.99564 0.99901 0.95400 1.21097 0.90456 0.92717 0.99795 1.24044 0.97976 0.97192 1.01699 0.90655 0.92365 0.92787 0.90917 0.92255 0.89933 0.92654 0.88581 0.89233 0.73390 0.82676 0.83375 0.87704 0.75025 1.20996 1.22108 0.83188 0.82619 0.89981 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.20 9.53 71.98 0.69 0.89 16 2 C 0.07 -0.05 3.33 30.59 0.10 0.05 16 3 C -0.15 0.18 9.56 71.98 0.69 0.87 16 4 O -0.38 -0.93 10.00 -148.98 -1.49 -2.42 16 5 C 0.06 -0.12 4.27 31.12 0.13 0.01 16 6 H 0.11 -0.58 7.45 -2.39 -0.02 -0.59 16 7 C -0.14 0.47 7.70 31.12 0.24 0.71 16 8 C 0.13 -0.38 4.35 45.52 0.20 -0.18 16 9 H 0.13 -0.77 7.76 -2.39 -0.02 -0.78 16 10 N -1.09 1.98 5.79 -167.20 -0.97 1.01 16 11 S 2.71 9.10 5.68 -56.49 -0.32 8.78 16 12 O -0.98 -8.59 17.05 -128.00 -2.18 -10.77 16 13 O -0.98 -8.96 17.28 -128.00 -2.21 -11.18 16 14 C -0.68 -1.02 5.95 22.27 0.13 -0.89 16 15 C -0.03 0.00 9.23 22.27 0.21 0.20 16 16 C -0.12 0.04 9.69 22.27 0.22 0.26 16 17 C -0.03 0.00 5.38 -19.87 -0.11 -0.10 16 18 C -0.09 0.31 2.79 71.24 0.20 0.51 16 19 O -0.55 0.67 12.81 -148.98 -1.91 -1.24 16 20 Si 0.76 -3.01 29.85 68.60 2.05 -0.96 16 21 C -0.14 0.04 8.67 22.27 0.19 0.23 16 22 C -0.02 -0.02 9.52 22.27 0.21 0.20 16 23 C -0.17 0.23 7.71 31.12 0.24 0.47 16 24 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.07 -0.24 7.42 -2.39 -0.02 -0.26 16 28 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.43 -1.98 8.94 -96.74 -0.87 -2.85 16 34 H 0.16 -0.50 7.62 -2.91 -0.02 -0.52 16 35 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 36 H 0.11 -0.81 7.96 -2.39 -0.02 -0.82 16 37 H 0.40 -3.57 8.74 -74.05 -0.65 -4.22 16 38 H -0.28 -0.06 7.11 99.48 0.71 0.64 16 39 H -0.29 -0.85 7.05 99.48 0.70 -0.15 16 40 H 0.15 -0.60 4.87 -2.91 -0.01 -0.61 16 41 H 0.16 -0.32 7.62 -2.91 -0.02 -0.34 16 42 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 Total: 0.00 -22.01 368.17 -4.15 -26.16 By element: Atomic # 1 Polarization: -12.16 SS G_CDS: -0.45 Total: -12.61 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 3.34 Total: 3.22 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -0.97 Total: 1.01 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -7.79 Total: -25.60 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.96 kcal Atomic # 16 Polarization: 9.10 SS G_CDS: -0.32 Total: 8.78 kcal Total: -22.01 -4.15 -26.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10905402_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.155 kcal (2) G-P(sol) polarization free energy of solvation -22.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds