Wall clock time and date at job start Mon Mar 8 2021 12:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47489 * 2 1 4 4 O 1.42899 * 109.47062 * 120.00695 * 2 1 3 5 5 C 1.42901 * 114.00381 * 89.99811 * 4 2 1 6 6 H 1.09006 * 112.84370 * 341.19456 * 5 4 2 7 7 C 1.53778 * 113.61656 * 112.50252 * 5 4 2 8 8 C 1.53782 * 87.08093 * 139.98230 * 7 5 4 9 9 H 1.09005 * 113.68967 * 89.12725 * 8 7 5 10 10 N 1.46494 * 113.61247 * 220.01760 * 8 7 5 11 11 S 1.65601 * 120.00073 * 242.49456 * 10 8 7 12 12 O 1.42097 * 106.40409 * 311.46217 * 11 10 8 13 13 O 1.42096 * 106.40214 * 178.53926 * 11 10 8 14 14 C 1.76199 * 107.21774 * 65.00460 * 11 10 8 15 15 C 1.33389 * 125.20582 * 89.99951 * 14 11 10 16 16 C 1.50699 * 122.53927 * 359.97438 * 15 14 11 17 17 O 1.42894 * 109.47188 * 74.99770 * 16 15 14 18 18 Si 1.86298 * 109.46950 * 195.00443 * 16 15 14 19 19 C 1.38426 * 114.91777 * 180.25109 * 15 14 11 20 20 C 1.33387 * 114.92207 * 359.49176 * 19 15 14 21 21 S 1.75882 * 109.59522 * 0.47776 * 20 19 15 22 22 C 1.53777 * 113.61509 * 210.00354 * 5 4 2 23 23 H 1.09007 * 109.46925 * 59.99573 * 1 2 3 24 24 H 1.08994 * 109.47623 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46822 * 300.00179 * 1 2 3 26 26 H 1.09012 * 109.46958 * 240.00190 * 2 1 3 27 27 H 1.09006 * 109.47184 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47429 * 300.00433 * 3 2 1 29 29 H 1.09005 * 109.46867 * 60.00541 * 3 2 1 30 30 H 1.08996 * 113.61672 * 25.43130 * 7 5 4 31 31 H 1.09004 * 113.61371 * 254.52904 * 7 5 4 32 32 H 0.97002 * 119.99867 * 62.50018 * 10 8 7 33 33 H 1.09006 * 109.46662 * 315.00039 * 16 15 14 34 34 H 0.96709 * 113.99337 * 60.00344 * 17 16 15 35 35 H 1.48506 * 109.99834 * 180.02562 * 18 16 15 36 36 H 1.48502 * 110.00011 * 301.31529 * 18 16 15 37 37 H 1.08004 * 122.53268 * 179.72507 * 19 15 14 38 38 H 1.08006 * 125.19903 * 180.20872 * 20 19 15 39 39 H 1.09002 * 113.61798 * 105.46639 * 22 5 4 40 40 H 1.08999 * 113.68964 * 334.57088 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0783 0.9885 6 1 1.6625 -2.4736 0.1265 7 6 3.6750 -2.5092 1.0478 8 6 3.2021 -3.7395 1.8400 9 1 2.9396 -4.5907 1.2117 10 7 4.0909 -4.1020 2.9467 11 16 4.8574 -5.5699 2.9464 12 8 3.8621 -6.5423 2.6582 13 8 5.6605 -5.6035 4.1181 14 6 5.9702 -5.5770 1.5802 15 6 7.2400 -5.1707 1.6207 16 6 7.8830 -4.6441 2.8778 17 8 8.1631 -5.7317 3.7612 18 14 9.4706 -3.7710 2.4444 19 6 7.9207 -5.2639 0.4189 20 6 7.2068 -5.7558 -0.5948 21 16 5.5765 -6.1214 -0.0453 22 6 1.9908 -2.8970 2.2733 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 4.3045 -1.8330 1.6261 31 1 4.0980 -2.7535 0.0733 32 1 4.2304 -3.4821 3.6797 33 1 7.2052 -3.9442 3.3667 34 1 8.7616 -6.3950 3.3908 35 1 10.1148 -3.2475 3.6758 36 1 10.3909 -4.7061 1.7487 37 1 8.9529 -4.9647 0.3113 38 1 7.5726 -5.9026 -1.6003 39 1 1.0542 -3.4543 2.2883 40 1 2.1594 -2.3279 3.1875 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10905402_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:26:47 Heat of formation + Delta-G solvation = -81.289369 kcal Electronic energy + Delta-G solvation = -25488.539366 eV Core-core repulsion = 21718.224453 eV Total energy + Delta-G solvation = -3770.314912 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.75469 -40.11699 -38.29213 -37.97002 -37.07088 -36.73393 -34.26258 -32.66789 -31.47390 -28.21859 -27.99206 -26.81893 -25.05947 -24.36677 -22.31287 -21.68827 -21.07880 -20.11728 -19.50247 -18.53988 -18.27599 -18.17287 -16.98590 -16.59205 -16.35955 -16.28532 -15.94112 -15.80110 -15.65015 -15.25973 -15.14005 -14.46975 -14.25743 -14.11062 -13.80938 -13.63449 -13.54210 -13.49935 -13.20743 -13.14625 -12.96904 -12.95705 -12.75667 -12.68162 -12.49273 -12.37862 -12.17969 -12.00744 -11.79379 -11.64310 -11.56301 -10.63917 -10.61344 -10.44344 -10.41544 -9.70607 -5.05636 -0.82163 -0.51627 0.27000 0.60448 1.15485 1.16916 1.50173 1.90590 1.97285 2.67819 2.74658 3.33909 3.37968 3.40929 3.45150 3.55271 3.66568 3.72412 3.92822 3.93203 4.00603 4.06176 4.11960 4.20597 4.33130 4.35370 4.61908 4.63358 4.64085 4.69352 4.77032 4.80607 4.81441 4.85514 4.90063 4.94047 5.00458 5.19756 5.23081 5.28223 5.85432 6.30929 6.45345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.364 6.364 5 C 0.064 3.936 6 H 0.092 0.908 7 C -0.170 4.170 8 C 0.123 3.877 9 H 0.117 0.883 10 N -1.099 6.099 11 S 2.706 3.294 12 O -0.952 6.952 13 O -0.921 6.921 14 C -0.772 4.772 15 C 0.008 3.992 16 C -0.076 4.076 17 O -0.492 6.492 18 Si 0.692 3.308 19 C -0.168 4.168 20 C -0.163 4.163 21 S 0.222 5.778 22 C -0.139 4.139 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.422 0.578 33 H 0.121 0.879 34 H 0.369 0.631 35 H -0.250 1.250 36 H -0.256 1.256 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.083 0.917 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 4.429 -6.745 8.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 C -0.208 4.208 4 O -0.283 6.283 5 C 0.005 3.995 6 H 0.110 0.890 7 C -0.209 4.209 8 C 0.016 3.984 9 H 0.135 0.865 10 N -0.859 5.859 11 S 2.790 3.210 12 O -0.942 6.942 13 O -0.911 6.911 14 C -0.973 4.973 15 C -0.010 4.010 16 C -0.188 4.188 17 O -0.296 6.296 18 Si 0.591 3.409 19 C -0.198 4.198 20 C -0.301 4.301 21 S 0.489 5.511 22 C -0.178 4.178 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.258 0.742 33 H 0.139 0.861 34 H 0.215 0.785 35 H -0.175 1.175 36 H -0.181 1.181 37 H 0.172 0.828 38 H 0.195 0.805 39 H 0.101 0.899 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.796 3.454 -6.380 7.299 hybrid contribution 1.732 -0.273 0.145 1.760 sum 0.936 3.181 -6.235 7.062 Atomic orbital electron populations 1.22339 0.95870 1.02427 1.02820 1.22169 0.93685 0.93960 0.87991 1.21873 1.01842 0.94414 1.02712 1.88000 1.85778 1.19033 1.35507 1.23465 0.95760 0.81914 0.98311 0.89015 1.24087 0.97991 0.97447 1.01402 1.22060 0.91061 0.97134 0.88194 0.86473 1.55544 1.59451 1.38718 1.32157 1.01827 0.73028 0.72964 0.73145 1.93622 1.57829 1.57355 1.85429 1.93734 1.68923 1.85145 1.43264 1.35833 1.15896 1.23937 1.21637 1.19162 0.91550 0.93682 0.96605 1.25074 1.09854 0.94538 0.89311 1.86934 1.68149 1.34258 1.40278 0.95191 0.75727 0.86094 0.83856 1.20342 1.02458 1.05061 0.91895 1.26206 0.98026 1.02051 1.03851 1.84309 1.10098 1.59216 0.97507 1.23608 0.98274 0.96851 0.99113 0.91581 0.92458 0.91664 0.92113 0.91925 0.91185 0.91717 0.88048 0.90448 0.74190 0.86078 0.78511 1.17455 1.18090 0.82820 0.80472 0.89863 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.24 9.53 37.16 0.35 0.59 16 2 C 0.08 -0.08 3.21 -26.73 -0.09 -0.17 16 3 C -0.15 0.21 9.56 37.16 0.36 0.57 16 4 O -0.36 -0.09 10.00 -35.23 -0.35 -0.45 16 5 C 0.06 -0.10 4.13 -25.92 -0.11 -0.21 16 6 H 0.09 -0.26 7.77 -51.93 -0.40 -0.67 16 7 C -0.17 0.40 7.71 -25.92 -0.20 0.21 16 8 C 0.12 -0.20 4.42 -67.12 -0.30 -0.50 16 9 H 0.12 -0.23 7.77 -51.93 -0.40 -0.63 16 10 N -1.10 1.00 5.79 -4.20 -0.02 0.98 16 11 S 2.71 6.33 5.63 -107.50 -0.61 5.73 16 12 O -0.95 -5.00 17.43 -57.17 -1.00 -6.00 16 13 O -0.92 -4.61 14.29 -66.03 -0.94 -5.56 16 14 C -0.77 -0.72 6.54 29.04 0.19 -0.53 16 15 C 0.01 0.00 5.14 -106.25 -0.55 -0.55 16 16 C -0.08 -0.03 1.79 36.01 0.06 0.03 16 17 O -0.49 -1.35 11.12 -56.67 -0.63 -1.98 16 18 Si 0.69 -0.92 30.45 -169.99 -5.18 -6.09 16 19 C -0.17 0.25 8.74 -41.21 -0.36 -0.11 16 20 C -0.16 0.34 11.23 29.04 0.33 0.67 16 21 S 0.22 -0.12 23.22 -107.50 -2.50 -2.61 16 22 C -0.14 0.22 7.70 -25.92 -0.20 0.02 16 23 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 26 H 0.06 -0.12 7.73 -51.92 -0.40 -0.53 16 27 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 29 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.10 -0.22 8.14 -51.93 -0.42 -0.65 16 31 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.42 -1.11 8.94 -34.47 -0.31 -1.42 16 33 H 0.12 -0.03 7.16 -51.93 -0.37 -0.40 16 34 H 0.37 -0.25 8.70 45.56 0.40 0.15 16 35 H -0.25 -0.51 7.11 56.52 0.40 -0.10 16 36 H -0.26 0.02 6.81 56.52 0.39 0.41 16 37 H 0.15 -0.48 5.53 -52.48 -0.29 -0.77 16 38 H 0.18 -0.84 8.06 -52.48 -0.42 -1.27 16 39 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 40 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 LS Contribution 354.63 15.07 5.34 5.34 Total: 0.00 -9.37 354.63 -12.03 -21.40 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: -5.65 Total: -10.79 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.51 Total: 0.02 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -0.02 Total: 0.98 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -2.92 Total: -13.99 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.18 Total: -6.09 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -3.10 Total: 3.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -9.37 -12.03 -21.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10905402_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.887 kcal (2) G-P(sol) polarization free energy of solvation -9.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds