Wall clock time and date at job start Mon Mar 8 2021 12:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47489 * 2 1 4 4 O 1.42899 * 109.47062 * 120.00695 * 2 1 3 5 5 C 1.42901 * 114.00381 * 89.99811 * 4 2 1 6 6 H 1.09006 * 112.84370 * 341.19456 * 5 4 2 7 7 C 1.53778 * 113.61656 * 112.50252 * 5 4 2 8 8 C 1.53782 * 87.08093 * 139.98230 * 7 5 4 9 9 H 1.09005 * 113.68967 * 89.12725 * 8 7 5 10 10 N 1.46494 * 113.61247 * 220.01760 * 8 7 5 11 11 S 1.65601 * 120.00073 * 242.49456 * 10 8 7 12 12 O 1.42097 * 106.40409 * 311.46217 * 11 10 8 13 13 O 1.42096 * 106.40214 * 178.53926 * 11 10 8 14 14 C 1.76199 * 107.21774 * 65.00460 * 11 10 8 15 15 C 1.33389 * 125.20582 * 89.99951 * 14 11 10 16 16 C 1.50699 * 122.53927 * 359.97438 * 15 14 11 17 17 O 1.42894 * 109.47188 * 74.99770 * 16 15 14 18 18 Si 1.86298 * 109.46950 * 195.00443 * 16 15 14 19 19 C 1.38426 * 114.91777 * 180.25109 * 15 14 11 20 20 C 1.33387 * 114.92207 * 359.49176 * 19 15 14 21 21 S 1.75882 * 109.59522 * 0.47776 * 20 19 15 22 22 C 1.53777 * 113.61509 * 210.00354 * 5 4 2 23 23 H 1.09007 * 109.46925 * 59.99573 * 1 2 3 24 24 H 1.08994 * 109.47623 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46822 * 300.00179 * 1 2 3 26 26 H 1.09012 * 109.46958 * 240.00190 * 2 1 3 27 27 H 1.09006 * 109.47184 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47429 * 300.00433 * 3 2 1 29 29 H 1.09005 * 109.46867 * 60.00541 * 3 2 1 30 30 H 1.08996 * 113.61672 * 25.43130 * 7 5 4 31 31 H 1.09004 * 113.61371 * 254.52904 * 7 5 4 32 32 H 0.97002 * 119.99867 * 62.50018 * 10 8 7 33 33 H 1.09006 * 109.46662 * 315.00039 * 16 15 14 34 34 H 0.96709 * 113.99337 * 60.00344 * 17 16 15 35 35 H 1.48506 * 109.99834 * 180.02562 * 18 16 15 36 36 H 1.48502 * 110.00011 * 301.31529 * 18 16 15 37 37 H 1.08004 * 122.53268 * 179.72507 * 19 15 14 38 38 H 1.08006 * 125.19903 * 180.20872 * 20 19 15 39 39 H 1.09002 * 113.61798 * 105.46639 * 22 5 4 40 40 H 1.08999 * 113.68964 * 334.57088 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0783 0.9885 6 1 1.6625 -2.4736 0.1265 7 6 3.6750 -2.5092 1.0478 8 6 3.2021 -3.7395 1.8400 9 1 2.9396 -4.5907 1.2117 10 7 4.0909 -4.1020 2.9467 11 16 4.8574 -5.5699 2.9464 12 8 3.8621 -6.5423 2.6582 13 8 5.6605 -5.6035 4.1181 14 6 5.9702 -5.5770 1.5802 15 6 7.2400 -5.1707 1.6207 16 6 7.8830 -4.6441 2.8778 17 8 8.1631 -5.7317 3.7612 18 14 9.4706 -3.7710 2.4444 19 6 7.9207 -5.2639 0.4189 20 6 7.2068 -5.7558 -0.5948 21 16 5.5765 -6.1214 -0.0453 22 6 1.9908 -2.8970 2.2733 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 4.3045 -1.8330 1.6261 31 1 4.0980 -2.7535 0.0733 32 1 4.2304 -3.4821 3.6797 33 1 7.2052 -3.9442 3.3667 34 1 8.7616 -6.3950 3.3908 35 1 10.1148 -3.2475 3.6758 36 1 10.3909 -4.7061 1.7487 37 1 8.9529 -4.9647 0.3113 38 1 7.5726 -5.9026 -1.6003 39 1 1.0542 -3.4543 2.2883 40 1 2.1594 -2.3279 3.1875 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10905402_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:26:46 Heat of formation + Delta-G solvation = -83.316512 kcal Electronic energy + Delta-G solvation = -25488.627269 eV Core-core repulsion = 21718.224453 eV Total energy + Delta-G solvation = -3770.402816 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63901 -40.08684 -38.37151 -38.05060 -37.15585 -36.98167 -34.20338 -32.59221 -31.40340 -28.09540 -28.00212 -26.66815 -24.96347 -24.28575 -22.19677 -21.68847 -20.99142 -20.14897 -19.47944 -18.60568 -18.35833 -18.11520 -16.95072 -16.58859 -16.36835 -16.25680 -15.94410 -15.73453 -15.62634 -15.22489 -15.08071 -14.39395 -14.22355 -14.03622 -13.70997 -13.61819 -13.52425 -13.41473 -13.29250 -13.21398 -13.12387 -13.06610 -12.78066 -12.65137 -12.47091 -12.26244 -12.21879 -11.89253 -11.69546 -11.54346 -11.50723 -10.63980 -10.54886 -10.36460 -10.32014 -9.63729 -4.96353 -0.84018 -0.56696 0.31194 0.72296 1.21815 1.26868 1.56993 1.93372 1.95948 2.60017 2.81829 3.35589 3.41191 3.48768 3.55336 3.57225 3.80835 3.87367 4.05956 4.08303 4.14365 4.18563 4.23872 4.34578 4.41816 4.44978 4.74022 4.77051 4.77803 4.84636 4.91549 4.91960 4.94472 4.98463 5.05064 5.07668 5.12609 5.32267 5.34830 5.41175 5.95816 6.44114 6.51483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 C -0.151 4.151 4 O -0.383 6.383 5 C 0.061 3.939 6 H 0.106 0.894 7 C -0.161 4.161 8 C 0.119 3.881 9 H 0.120 0.880 10 N -1.090 6.090 11 S 2.716 3.284 12 O -0.989 6.989 13 O -0.956 6.956 14 C -0.792 4.792 15 C 0.014 3.986 16 C -0.101 4.101 17 O -0.521 6.521 18 Si 0.787 3.213 19 C -0.177 4.177 20 C -0.144 4.144 21 S 0.214 5.786 22 C -0.143 4.143 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.429 0.571 33 H 0.119 0.881 34 H 0.379 0.621 35 H -0.301 1.301 36 H -0.264 1.264 37 H 0.175 0.825 38 H 0.210 0.790 39 H 0.084 0.916 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 4.900 -8.908 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.018 3.982 3 C -0.208 4.208 4 O -0.303 6.303 5 C 0.003 3.997 6 H 0.123 0.877 7 C -0.200 4.200 8 C 0.011 3.989 9 H 0.138 0.862 10 N -0.852 5.852 11 S 2.804 3.196 12 O -0.979 6.979 13 O -0.946 6.946 14 C -0.995 4.995 15 C -0.005 4.005 16 C -0.210 4.210 17 O -0.328 6.328 18 Si 0.689 3.311 19 C -0.206 4.206 20 C -0.282 4.282 21 S 0.480 5.520 22 C -0.182 4.182 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.267 0.733 33 H 0.137 0.863 34 H 0.227 0.773 35 H -0.229 1.229 36 H -0.189 1.189 37 H 0.192 0.808 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.069 3.913 -8.532 9.387 hybrid contribution 1.490 -0.398 0.817 1.745 sum 1.421 3.514 -7.716 8.597 Atomic orbital electron populations 1.22333 0.95868 1.02451 1.02702 1.22283 0.93741 0.94108 0.88099 1.21884 1.01770 0.94385 1.02763 1.87979 1.85948 1.19932 1.36421 1.23583 0.96392 0.81217 0.98522 0.87655 1.24029 0.97623 0.96559 1.01835 1.22201 0.90980 0.97608 0.88067 0.86181 1.55281 1.59289 1.37763 1.32834 1.01041 0.72595 0.73083 0.72883 1.93570 1.59152 1.59216 1.85992 1.93685 1.69633 1.85879 1.45394 1.35477 1.16098 1.26085 1.21874 1.19259 0.91248 0.93000 0.96998 1.25522 1.11753 0.94329 0.89426 1.86892 1.68903 1.35363 1.41642 0.94156 0.72507 0.83480 0.80914 1.20508 1.03376 1.05485 0.91191 1.26603 0.96564 0.99980 1.05014 1.84358 1.11664 1.59366 0.96577 1.23642 0.98348 0.96951 0.99284 0.90639 0.92362 0.92823 0.90840 0.92017 0.90033 0.92769 0.88195 0.89062 0.73298 0.86288 0.77277 1.22887 1.18912 0.80814 0.77319 0.89709 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.49 9.53 71.98 0.69 1.17 16 2 C 0.07 -0.19 3.21 30.59 0.10 -0.09 16 3 C -0.15 0.44 9.56 71.98 0.69 1.13 16 4 O -0.38 -0.22 10.00 -148.98 -1.49 -1.71 16 5 C 0.06 -0.21 4.13 31.12 0.13 -0.08 16 6 H 0.11 -0.68 7.77 -2.38 -0.02 -0.70 16 7 C -0.16 0.83 7.71 31.12 0.24 1.07 16 8 C 0.12 -0.33 4.42 45.52 0.20 -0.13 16 9 H 0.12 -0.40 7.77 -2.38 -0.02 -0.42 16 10 N -1.09 0.68 5.79 -167.20 -0.97 -0.28 16 11 S 2.72 17.19 5.63 -56.49 -0.32 16.87 16 12 O -0.99 -12.32 17.43 -128.00 -2.23 -14.55 16 13 O -0.96 -11.73 14.29 -119.53 -1.71 -13.44 16 14 C -0.79 -1.78 6.54 66.72 0.44 -1.34 16 15 C 0.01 0.00 5.14 -20.92 -0.11 -0.11 16 16 C -0.10 -0.14 1.79 71.24 0.13 -0.01 16 17 O -0.52 -3.56 11.12 -128.48 -1.43 -4.99 16 18 Si 0.79 -2.50 30.45 68.60 2.09 -0.41 16 19 C -0.18 0.86 8.74 21.22 0.19 1.04 16 20 C -0.14 0.94 11.23 66.72 0.75 1.69 16 21 S 0.21 -0.35 23.22 -56.49 -1.31 -1.66 16 22 C -0.14 0.37 7.70 31.12 0.24 0.61 16 23 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 24 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.07 -0.38 7.73 -2.38 -0.02 -0.40 16 27 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 28 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.05 -0.05 8.14 -2.38 -0.02 -0.06 16 30 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.43 -1.64 8.94 -96.74 -0.87 -2.51 16 33 H 0.12 0.10 7.16 -2.38 -0.02 0.09 16 34 H 0.38 -0.13 8.70 -74.05 -0.64 -0.77 16 35 H -0.30 -1.56 7.11 99.48 0.71 -0.86 16 36 H -0.26 0.52 6.81 99.48 0.68 1.20 16 37 H 0.17 -1.57 5.53 -2.91 -0.02 -1.58 16 38 H 0.21 -2.76 8.06 -2.91 -0.02 -2.78 16 39 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -22.85 354.63 -4.12 -26.98 By element: Atomic # 1 Polarization: -11.32 SS G_CDS: -0.43 Total: -11.75 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 3.67 Total: 4.95 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -0.97 Total: -0.28 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -6.86 Total: -34.69 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.09 Total: -0.41 kcal Atomic # 16 Polarization: 16.84 SS G_CDS: -1.63 Total: 15.21 kcal Total: -22.85 -4.12 -26.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10905402_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.340 kcal (2) G-P(sol) polarization free energy of solvation -22.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds