Wall clock time and date at job start Mon Mar 8 2021 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47083 * 2 1 4 4 C 1.42899 * 114.00109 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.90508 * 341.24477 * 4 3 2 6 6 C 1.53773 * 113.62197 * 112.50138 * 4 3 2 7 7 C 1.53773 * 87.08682 * 139.97957 * 6 4 3 8 8 H 1.09000 * 113.69078 * 89.12154 * 7 6 4 9 9 N 1.46497 * 113.61809 * 220.02318 * 7 6 4 10 10 S 1.65600 * 119.99991 * 242.74192 * 9 7 6 11 11 O 1.42099 * 106.40301 * 309.28089 * 10 9 7 12 12 O 1.42097 * 106.40450 * 176.36008 * 10 9 7 13 13 C 1.76202 * 107.21666 * 62.81960 * 10 9 7 14 14 C 1.33384 * 122.54447 * 90.86405 * 13 10 9 15 15 C 1.50706 * 125.19889 * 359.97438 * 14 13 10 16 16 S 1.75872 * 109.59937 * 179.97438 * 14 13 10 17 17 C 1.75884 * 90.97137 * 359.97438 * 16 14 13 18 18 C 1.50701 * 125.20450 * 180.02562 * 17 16 14 19 19 C 1.33394 * 109.59041 * 359.97438 * 17 16 14 20 20 C 1.50703 * 122.53783 * 180.02562 * 19 17 16 21 21 O 1.42900 * 109.47115 * 315.27405 * 20 19 17 22 22 Si 1.86302 * 109.47036 * 75.27356 * 20 19 17 23 23 C 1.53785 * 113.61236 * 210.00214 * 4 3 2 24 24 H 1.08999 * 109.47121 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47467 * 300.00492 * 1 2 3 26 26 H 1.09000 * 109.47292 * 60.00007 * 1 2 3 27 27 H 1.08999 * 109.47362 * 240.00054 * 2 1 3 28 28 H 1.09000 * 109.47292 * 119.99993 * 2 1 3 29 29 H 1.09008 * 113.61086 * 25.43117 * 6 4 3 30 30 H 1.08996 * 113.61730 * 254.53375 * 6 4 3 31 31 H 0.96995 * 120.00294 * 62.73694 * 9 7 6 32 32 H 1.08998 * 109.46861 * 184.69650 * 15 14 13 33 33 H 1.09008 * 109.47063 * 304.69442 * 15 14 13 34 34 H 1.08999 * 109.47028 * 64.69247 * 15 14 13 35 35 H 1.08999 * 109.47379 * 5.24495 * 18 17 16 36 36 H 1.09004 * 109.47103 * 125.24908 * 18 17 16 37 37 H 1.09000 * 109.46706 * 245.24326 * 18 17 16 38 38 H 1.09003 * 109.46729 * 195.27280 * 20 19 17 39 39 H 0.96700 * 113.99830 * 180.02562 * 21 20 19 40 40 H 1.48502 * 110.00064 * 303.95614 * 22 20 19 41 41 H 1.48499 * 109.99720 * 65.27465 * 22 20 19 42 42 H 1.09000 * 113.61914 * 105.46712 * 23 4 3 43 43 H 1.09000 * 113.61624 * 334.55955 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9290 0.5459 0.3219 6 6 4.0020 2.0465 -1.3024 7 6 4.9896 2.8315 -0.4232 8 1 5.9145 2.2932 -0.2155 9 7 5.2205 4.2037 -0.8812 10 16 6.7335 4.6714 -1.3656 11 8 7.6245 4.2838 -0.3287 12 8 6.6116 6.0104 -1.8253 13 6 7.1545 3.6985 -2.7730 14 6 6.8853 4.0868 -4.0203 15 6 6.2017 5.3750 -4.4007 16 16 7.4499 2.8658 -5.1532 17 6 8.0380 1.8672 -3.8301 18 6 8.7174 0.5311 -3.9856 19 6 7.7916 2.4741 -2.6680 20 6 8.1769 1.8718 -1.3413 21 8 7.8225 0.4875 -1.3258 22 14 10.0148 2.0451 -1.0909 23 6 3.9488 2.7252 0.7040 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2979 2.6807 -1.8413 30 1 4.4807 1.3052 -1.9421 31 1 4.4873 4.8383 -0.9007 32 1 6.0369 5.3944 -5.4779 33 1 5.2437 5.4439 -3.8852 34 1 6.8301 6.2181 -4.1139 35 1 8.8714 0.3227 -5.0443 36 1 9.6805 0.5516 -3.4754 37 1 8.0917 -0.2476 -3.5492 38 1 7.6504 2.3907 -0.5402 39 1 8.0415 0.0347 -0.4999 40 1 10.7429 1.4244 -2.2266 41 1 10.3788 3.4804 -0.9778 42 1 4.3848 2.5317 1.6841 43 1 3.2304 3.5448 0.7136 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10905472_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:27:19 Heat of formation + Delta-G solvation = -84.324510 kcal Electronic energy + Delta-G solvation = -28424.283764 eV Core-core repulsion = 24498.299619 eV Total energy + Delta-G solvation = -3925.984145 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72808 -40.14802 -38.49989 -37.77867 -37.21517 -36.93108 -34.21926 -33.92148 -31.70070 -30.90460 -28.09687 -26.82291 -25.88709 -25.03703 -23.71887 -23.12291 -21.31255 -20.67500 -19.95196 -19.14349 -18.65775 -18.25757 -17.82988 -17.28579 -16.86344 -16.60163 -16.35453 -16.14195 -15.70245 -15.45684 -15.13024 -14.82361 -14.51278 -14.39166 -14.30459 -14.22782 -13.99164 -13.67020 -13.57613 -13.56266 -13.43362 -13.29728 -13.20394 -13.06532 -12.98743 -12.77981 -12.60472 -12.53359 -12.09681 -12.00446 -11.90804 -11.81076 -11.65854 -11.40162 -10.58413 -10.53377 -10.41112 -9.98155 -9.34595 -4.97029 -0.76921 -0.40783 0.37533 0.71292 0.82402 1.48668 1.76314 1.96025 2.13464 2.63961 2.73062 3.13276 3.24567 3.37887 3.45281 3.60929 3.68574 3.74465 3.80436 3.99872 4.05658 4.11547 4.15282 4.20205 4.25662 4.36170 4.41384 4.44099 4.54851 4.64980 4.68284 4.68818 4.71191 4.77155 4.89445 4.90253 4.95556 4.97150 5.04618 5.09231 5.16719 5.25189 5.29192 5.81082 6.27012 6.56254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.373 6.373 4 C 0.066 3.934 5 H 0.093 0.907 6 C -0.168 4.168 7 C 0.124 3.876 8 H 0.122 0.878 9 N -1.099 6.099 10 S 2.703 3.297 11 O -0.948 6.948 12 O -0.952 6.952 13 C -0.686 4.686 14 C -0.049 4.049 15 C -0.111 4.111 16 S 0.156 5.844 17 C -0.163 4.163 18 C -0.086 4.086 19 C -0.041 4.041 20 C -0.074 4.074 21 O -0.544 6.544 22 Si 0.691 3.309 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.421 0.579 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.384 0.616 40 H -0.251 1.251 41 H -0.252 1.252 42 H 0.084 0.916 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 -4.700 1.029 5.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.007 3.993 5 H 0.111 0.889 6 C -0.207 4.207 7 C 0.017 3.983 8 H 0.139 0.861 9 N -0.858 5.858 10 S 2.791 3.209 11 O -0.938 6.938 12 O -0.942 6.942 13 C -0.786 4.786 14 C -0.170 4.170 15 C -0.170 4.170 16 S 0.422 5.578 17 C -0.281 4.281 18 C -0.144 4.144 19 C -0.051 4.051 20 C -0.185 4.185 21 O -0.351 6.351 22 Si 0.591 3.409 23 C -0.179 4.179 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.257 0.743 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.232 0.768 40 H -0.176 1.176 41 H -0.176 1.176 42 H 0.103 0.897 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.712 -3.712 -1.126 3.944 hybrid contribution -0.775 -0.111 0.504 0.931 sum -1.488 -3.823 -0.622 4.149 Atomic orbital electron populations 1.21759 0.93628 1.02463 1.03197 1.22544 0.95746 0.83660 1.00155 1.87957 1.20058 1.26610 1.94547 1.23415 0.81706 0.97836 0.96363 0.88876 1.24021 0.98546 1.00272 0.97899 1.22165 0.98901 0.81162 0.96078 0.86065 1.55442 1.29439 1.20133 1.80776 1.01673 0.72878 0.72876 0.73475 1.93516 1.62938 1.82971 1.54338 1.93601 1.85753 1.32862 1.81979 1.29390 1.19643 1.12902 1.16647 1.24526 0.97835 0.99773 0.94861 1.20900 1.01272 0.91726 1.03060 1.84426 1.53910 1.10315 1.09170 1.24452 1.07128 1.01910 0.94618 1.20537 1.00639 0.91059 1.02212 1.17467 0.99870 0.92973 0.94751 1.24941 1.12972 0.85200 0.95424 1.86420 1.86150 1.20188 1.42305 0.95528 0.74274 0.84400 0.86672 1.23625 0.97405 0.98521 0.98320 0.90977 0.91775 0.91851 0.93285 0.93176 0.88538 0.90305 0.74284 0.90087 0.89071 0.87234 0.91811 0.90111 0.88628 0.88266 0.76847 1.17606 1.17598 0.89739 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 10.28 37.16 0.38 0.52 16 2 C 0.06 -0.03 6.50 37.16 0.24 0.21 16 3 O -0.37 -0.41 10.35 -35.23 -0.36 -0.78 16 4 C 0.07 -0.06 4.31 -25.92 -0.11 -0.17 16 5 H 0.09 -0.22 7.87 -51.93 -0.41 -0.63 16 6 C -0.17 0.14 7.71 -25.93 -0.20 -0.06 16 7 C 0.12 -0.13 4.40 -67.12 -0.30 -0.43 16 8 H 0.12 -0.19 5.36 -51.93 -0.28 -0.46 16 9 N -1.10 0.65 5.79 -4.20 -0.02 0.62 16 10 S 2.70 6.44 5.41 -107.50 -0.58 5.86 16 11 O -0.95 -3.86 13.72 -57.17 -0.78 -4.64 16 12 O -0.95 -4.00 15.17 -57.17 -0.87 -4.87 16 13 C -0.69 -1.76 5.82 -41.21 -0.24 -2.00 16 14 C -0.05 -0.09 6.49 -36.00 -0.23 -0.32 16 15 C -0.11 -0.01 8.67 36.01 0.31 0.30 16 16 S 0.16 0.22 23.31 -107.50 -2.51 -2.29 16 17 C -0.16 -0.39 6.16 -36.00 -0.22 -0.61 16 18 C -0.09 -0.08 8.90 36.01 0.32 0.24 16 19 C -0.04 -0.11 4.22 -106.24 -0.45 -0.56 16 20 C -0.07 -0.07 1.88 36.01 0.07 0.00 16 21 O -0.54 0.79 10.75 -35.23 -0.38 0.41 16 22 Si 0.69 0.85 30.83 -169.99 -5.24 -4.39 16 23 C -0.14 0.19 7.70 -25.91 -0.20 0.00 16 24 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 25 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 27 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 28 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 29 H 0.10 -0.04 8.14 -51.92 -0.42 -0.46 16 30 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.42 -0.99 8.94 -34.47 -0.31 -1.30 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.09 -0.09 7.96 -51.92 -0.41 -0.50 16 34 H 0.11 0.09 7.21 -51.93 -0.37 -0.28 16 35 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 36 H 0.08 0.10 5.42 -51.93 -0.28 -0.18 16 37 H 0.10 0.03 7.18 -51.93 -0.37 -0.34 16 38 H 0.10 0.05 2.85 -51.93 -0.15 -0.10 16 39 H 0.38 -2.33 8.74 45.56 0.40 -1.94 16 40 H -0.25 -0.67 5.70 56.52 0.32 -0.34 16 41 H -0.25 -1.29 7.11 56.52 0.40 -0.88 16 42 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 43 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 362.27 15.07 5.46 5.46 Total: 0.00 -7.93 362.27 -12.03 -19.96 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: -6.11 Total: -12.48 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.63 Total: -2.87 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -0.02 Total: 0.62 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -2.40 Total: -9.87 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: -5.24 Total: -4.39 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -3.09 Total: 3.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -7.93 -12.03 -19.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10905472_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.369 kcal (2) G-P(sol) polarization free energy of solvation -7.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds