Wall clock time and date at job start Mon Mar 8 2021 10:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99774 * 2 1 4 4 O 1.20821 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99976 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84531 * 311.19469 * 5 3 2 7 7 C 1.53952 * 113.74618 * 82.40312 * 5 3 2 8 8 C 1.53777 * 87.01969 * 139.94428 * 7 5 3 9 9 H 1.09001 * 113.61345 * 89.23226 * 8 7 5 10 10 S 1.81405 * 113.61355 * 220.04876 * 8 7 5 11 11 O 1.42102 * 110.54212 * 171.58993 * 10 8 7 12 12 O 1.42096 * 110.54164 * 34.83332 * 10 8 7 13 13 O 1.52207 * 104.44638 * 283.21293 * 10 8 7 14 14 C 1.35916 * 113.99760 * 284.59316 * 13 10 8 15 15 C 1.38796 * 120.05878 * 265.45266 * 14 13 10 16 16 Br 1.89099 * 120.03617 * 359.97438 * 15 14 13 17 17 C 1.38237 * 119.92624 * 180.23083 * 15 14 13 18 18 C 1.50697 * 119.97591 * 179.77391 * 17 15 14 19 19 O 1.42899 * 109.47367 * 74.72983 * 18 17 15 20 20 Si 1.86308 * 109.46811 * 194.72651 * 18 17 15 21 21 C 1.38251 * 120.04446 * 359.50102 * 17 15 14 22 22 C 1.38282 * 120.11743 * 0.24944 * 21 17 15 23 23 C 1.38145 * 120.07458 * 0.02562 * 22 21 17 24 24 C 1.53775 * 87.17569 * 334.63934 * 8 7 5 25 25 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46829 * 299.99434 * 1 2 3 27 27 H 1.08996 * 109.47192 * 59.99820 * 1 2 3 28 28 H 1.08999 * 113.61410 * 25.42204 * 7 5 3 29 29 H 1.09003 * 113.66817 * 254.47043 * 7 5 3 30 30 H 1.08998 * 109.47078 * 314.72232 * 18 17 15 31 31 H 0.96701 * 114.00362 * 59.99465 * 19 18 17 32 32 H 1.48497 * 110.00174 * 58.68317 * 20 18 17 33 33 H 1.48502 * 109.99780 * 180.02562 * 20 18 17 34 34 H 1.08000 * 119.93576 * 180.27277 * 21 17 15 35 35 H 1.08001 * 119.96242 * 180.02562 * 22 21 17 36 36 H 1.07994 * 120.02242 * 180.02562 * 23 22 21 37 37 H 1.08998 * 113.61687 * 139.93901 * 24 8 7 38 38 H 1.09000 * 113.61373 * 270.84485 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0238 0.6363 0.7550 7 6 4.1945 1.1217 -1.3977 8 6 5.1819 2.2267 -0.9868 9 1 6.0818 1.8495 -0.5009 10 16 5.5411 3.4103 -2.3137 11 8 6.2997 4.5035 -1.8148 12 8 4.3885 3.6242 -3.1166 13 8 6.5056 2.6716 -3.2307 14 6 7.7712 2.5805 -2.7437 15 6 8.7260 3.5191 -3.1093 16 35 8.2679 4.9263 -4.2865 17 6 10.0137 3.4211 -2.6161 18 6 11.0527 4.4366 -3.0164 19 8 10.8082 5.6649 -2.3282 20 14 12.7463 3.8013 -2.5702 21 6 10.3476 2.3952 -1.7515 22 6 9.3964 1.4621 -1.3820 23 6 8.1096 1.5521 -1.8763 24 6 4.1077 2.7143 -0.0004 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.5283 1.4115 -2.2102 29 1 4.6667 0.1529 -1.5612 30 1 10.9999 4.6059 -4.0918 31 1 10.8397 5.5890 -1.3647 32 1 13.0003 2.5082 -3.2546 33 1 13.7799 4.7941 -2.9592 34 1 11.3530 2.3229 -1.3638 35 1 9.6598 0.6619 -0.7061 36 1 7.3673 0.8231 -1.5868 37 1 4.5097 3.0295 0.9624 38 1 3.4176 3.4404 -0.4303 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10910594_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:12 Heat of formation + Delta-G solvation = -137.798105 kcal Electronic energy + Delta-G solvation = -28901.208875 eV Core-core repulsion = 24465.921554 eV Total energy + Delta-G solvation = -4435.287321 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48400 -41.94343 -40.05982 -39.69519 -38.30983 -37.59248 -37.37590 -37.19700 -33.81762 -32.50709 -30.47271 -29.98929 -27.95073 -27.34803 -27.14015 -24.87005 -23.80060 -23.00049 -21.60360 -20.92084 -19.86286 -19.33481 -18.81183 -18.54844 -18.13562 -17.74950 -17.63169 -17.51806 -16.93195 -16.70545 -16.37341 -15.96639 -15.59820 -15.23124 -14.90585 -14.68073 -14.55906 -14.42915 -14.21556 -14.06438 -13.94015 -13.67125 -13.55184 -13.41480 -13.25987 -13.17833 -13.14248 -13.09455 -12.81382 -12.34585 -12.13268 -12.07006 -12.02659 -11.84875 -11.72943 -11.33774 -11.18266 -10.60694 -10.40280 -10.01615 -5.20263 -1.26387 -0.44049 -0.37222 0.38132 0.82072 1.04637 1.09524 1.50319 1.58742 1.85618 1.91696 2.35452 2.48268 2.71477 2.90526 3.00020 3.04437 3.30243 3.34893 3.45801 3.48995 3.55585 3.73239 3.77838 3.92940 4.02466 4.12458 4.17137 4.18144 4.21585 4.30606 4.32204 4.42207 4.45820 4.47134 4.56486 4.71650 4.72716 4.77981 5.19893 5.29468 6.48752 6.62582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.139 0.861 7 C -0.093 4.093 8 C -0.656 4.656 9 H 0.163 0.837 10 S 2.590 3.410 11 O -0.929 6.929 12 O -0.909 6.909 13 O -0.655 6.655 14 C 0.097 3.903 15 C -0.050 4.050 16 Br -0.002 7.002 17 C -0.077 4.077 18 C -0.080 4.080 19 O -0.522 6.522 20 Si 0.692 3.308 21 C -0.093 4.093 22 C -0.078 4.078 23 C -0.128 4.128 24 C -0.087 4.087 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.380 0.620 32 H -0.252 1.252 33 H -0.247 1.247 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.107 0.893 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -7.726 6.518 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.384 6.384 5 C -0.115 4.115 6 H 0.156 0.844 7 C -0.131 4.131 8 C -0.762 4.762 9 H 0.181 0.819 10 S 2.684 3.316 11 O -0.928 6.928 12 O -0.907 6.907 13 O -0.614 6.614 14 C 0.053 3.947 15 C -0.133 4.133 16 Br 0.085 6.915 17 C -0.080 4.080 18 C -0.190 4.190 19 O -0.326 6.326 20 Si 0.592 3.408 21 C -0.112 4.112 22 C -0.097 4.097 23 C -0.148 4.148 24 C -0.125 4.125 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.227 0.773 32 H -0.177 1.177 33 H -0.172 1.172 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.125 0.875 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.517 -6.372 4.554 9.042 hybrid contribution -0.946 -0.774 0.181 1.236 sum 3.571 -7.146 4.736 9.287 Atomic orbital electron populations 1.23366 0.75627 1.04155 1.02936 1.86499 1.23973 1.32978 1.83765 1.23434 0.91482 0.81698 0.72557 1.90717 1.66809 1.36381 1.44472 1.22447 0.87998 1.00078 1.00960 0.84354 1.22697 0.95540 0.98375 0.96500 1.32348 1.08216 1.16599 1.19072 0.81924 1.05851 0.74831 0.75382 0.75557 1.93711 1.67771 1.49889 1.81386 1.93682 1.49098 1.83228 1.64741 1.85780 1.27680 1.84161 1.63751 1.17701 0.80576 0.97530 0.98929 1.22007 0.95254 0.95452 1.00538 1.96875 1.92887 1.43745 1.57973 1.20392 0.93344 0.97414 0.96820 1.25337 1.05602 0.87103 1.00984 1.86631 1.94596 1.28052 1.23354 0.95028 0.74689 0.79954 0.91153 1.21264 1.00251 0.93509 0.96153 1.21179 0.91233 0.98770 0.98500 1.21474 0.99284 0.96937 0.97141 1.22630 0.93927 0.96034 0.99910 0.87701 0.91598 0.91542 0.87175 0.87505 0.86040 0.77314 1.17657 1.17165 0.83279 0.82830 0.82973 0.87476 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.24 10.57 -39.26 -0.41 -0.65 16 3 C 0.47 0.62 7.49 36.00 0.27 0.89 16 4 O -0.50 -2.28 15.65 -18.75 -0.29 -2.57 16 5 C -0.09 0.20 4.26 -90.87 -0.39 -0.19 16 6 H 0.14 -0.70 8.14 -51.93 -0.42 -1.13 16 7 C -0.09 0.23 7.21 -25.83 -0.19 0.05 16 8 C -0.66 1.50 3.75 -25.92 -0.10 1.40 16 9 H 0.16 -0.95 6.04 -51.93 -0.31 -1.26 16 10 S 2.59 6.54 5.09 -107.50 -0.55 5.99 16 11 O -0.93 -4.11 15.68 -67.04 -1.05 -5.16 16 12 O -0.91 -5.45 17.43 -67.04 -1.17 -6.62 16 13 O -0.66 -1.45 9.39 -51.80 -0.49 -1.93 16 14 C 0.10 0.09 4.72 -39.20 -0.18 -0.09 16 15 C -0.05 -0.11 5.68 -39.38 -0.22 -0.33 16 16 Br 0.00 -0.01 30.61 -68.01 -2.08 -2.09 16 17 C -0.08 0.04 5.26 -104.62 -0.55 -0.51 16 18 C -0.08 0.05 2.02 36.00 0.07 0.13 16 19 O -0.52 0.03 12.68 -35.23 -0.45 -0.42 16 20 Si 0.69 -1.88 29.91 -169.99 -5.09 -6.96 16 21 C -0.09 0.35 8.66 -39.56 -0.34 0.01 16 22 C -0.08 0.37 10.04 -39.60 -0.40 -0.02 16 23 C -0.13 0.40 8.50 -39.44 -0.34 0.06 16 24 C -0.09 0.13 6.99 -25.92 -0.18 -0.05 16 25 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 26 H 0.07 -0.06 8.13 -51.93 -0.42 -0.48 16 27 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 28 H 0.11 -0.11 7.50 -51.93 -0.39 -0.50 16 29 H 0.11 -0.58 8.14 -51.93 -0.42 -1.00 16 30 H 0.12 0.07 7.24 -51.93 -0.38 -0.31 16 31 H 0.38 -1.63 8.70 45.56 0.40 -1.23 16 32 H -0.25 0.17 7.11 56.52 0.40 0.57 16 33 H -0.25 -0.21 7.11 56.52 0.40 0.20 16 34 H 0.15 -1.03 5.12 -52.49 -0.27 -1.30 16 35 H 0.15 -1.25 8.06 -52.49 -0.42 -1.68 16 36 H 0.15 -0.99 6.84 -52.49 -0.36 -1.35 16 37 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 38 H 0.11 0.04 7.40 -51.93 -0.38 -0.35 16 LS Contribution 352.07 15.07 5.31 5.31 Total: 0.00 -13.02 352.07 -11.60 -24.62 By element: Atomic # 1 Polarization: -8.03 SS G_CDS: -3.85 Total: -11.88 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.48 Total: 2.37 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -3.86 Total: -17.35 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -5.09 Total: -6.96 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -0.55 Total: 5.99 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.08 Total: -2.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -13.02 -11.60 -24.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.181 kcal (2) G-P(sol) polarization free energy of solvation -13.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds