Wall clock time and date at job start Mon Mar 8 2021 10:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99774 * 2 1 4 4 O 1.20821 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99976 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84531 * 311.19469 * 5 3 2 7 7 C 1.53952 * 113.74618 * 82.40312 * 5 3 2 8 8 C 1.53777 * 87.01969 * 139.94428 * 7 5 3 9 9 H 1.09001 * 113.61345 * 89.23226 * 8 7 5 10 10 S 1.81405 * 113.61355 * 220.04876 * 8 7 5 11 11 O 1.42102 * 110.54212 * 171.58993 * 10 8 7 12 12 O 1.42096 * 110.54164 * 34.83332 * 10 8 7 13 13 O 1.52207 * 104.44638 * 283.21293 * 10 8 7 14 14 C 1.35916 * 113.99760 * 284.59316 * 13 10 8 15 15 C 1.38796 * 120.05878 * 265.45266 * 14 13 10 16 16 Br 1.89099 * 120.03617 * 359.97438 * 15 14 13 17 17 C 1.38237 * 119.92624 * 180.23083 * 15 14 13 18 18 C 1.50697 * 119.97591 * 179.77391 * 17 15 14 19 19 O 1.42899 * 109.47367 * 74.72983 * 18 17 15 20 20 Si 1.86308 * 109.46811 * 194.72651 * 18 17 15 21 21 C 1.38251 * 120.04446 * 359.50102 * 17 15 14 22 22 C 1.38282 * 120.11743 * 0.24944 * 21 17 15 23 23 C 1.38145 * 120.07458 * 0.02562 * 22 21 17 24 24 C 1.53775 * 87.17569 * 334.63934 * 8 7 5 25 25 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46829 * 299.99434 * 1 2 3 27 27 H 1.08996 * 109.47192 * 59.99820 * 1 2 3 28 28 H 1.08999 * 113.61410 * 25.42204 * 7 5 3 29 29 H 1.09003 * 113.66817 * 254.47043 * 7 5 3 30 30 H 1.08998 * 109.47078 * 314.72232 * 18 17 15 31 31 H 0.96701 * 114.00362 * 59.99465 * 19 18 17 32 32 H 1.48497 * 110.00174 * 58.68317 * 20 18 17 33 33 H 1.48502 * 109.99780 * 180.02562 * 20 18 17 34 34 H 1.08000 * 119.93576 * 180.27277 * 21 17 15 35 35 H 1.08001 * 119.96242 * 180.02562 * 22 21 17 36 36 H 1.07994 * 120.02242 * 180.02562 * 23 22 21 37 37 H 1.08998 * 113.61687 * 139.93901 * 24 8 7 38 38 H 1.09000 * 113.61373 * 270.84485 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0238 0.6363 0.7550 7 6 4.1945 1.1217 -1.3977 8 6 5.1819 2.2267 -0.9868 9 1 6.0818 1.8495 -0.5009 10 16 5.5411 3.4103 -2.3137 11 8 6.2997 4.5035 -1.8148 12 8 4.3885 3.6242 -3.1166 13 8 6.5056 2.6716 -3.2307 14 6 7.7712 2.5805 -2.7437 15 6 8.7260 3.5191 -3.1093 16 35 8.2679 4.9263 -4.2865 17 6 10.0137 3.4211 -2.6161 18 6 11.0527 4.4366 -3.0164 19 8 10.8082 5.6649 -2.3282 20 14 12.7463 3.8013 -2.5702 21 6 10.3476 2.3952 -1.7515 22 6 9.3964 1.4621 -1.3820 23 6 8.1096 1.5521 -1.8763 24 6 4.1077 2.7143 -0.0004 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.5283 1.4115 -2.2102 29 1 4.6667 0.1529 -1.5612 30 1 10.9999 4.6059 -4.0918 31 1 10.8397 5.5890 -1.3647 32 1 13.0003 2.5082 -3.2546 33 1 13.7799 4.7941 -2.9592 34 1 11.3530 2.3229 -1.3638 35 1 9.6598 0.6619 -0.7061 36 1 7.3673 0.8231 -1.5868 37 1 4.5097 3.0295 0.9624 38 1 3.4176 3.4404 -0.4303 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10910594_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:11 Heat of formation + Delta-G solvation = -143.597417 kcal Electronic energy + Delta-G solvation = -28901.460352 eV Core-core repulsion = 24465.921554 eV Total energy + Delta-G solvation = -4435.538798 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41079 -41.94934 -39.93293 -39.61010 -38.51149 -37.52421 -37.46226 -37.37400 -33.71187 -32.36105 -30.40202 -29.92869 -27.84806 -27.16220 -26.99032 -24.77167 -23.72348 -22.86617 -21.58197 -20.79052 -19.87401 -19.32107 -18.84655 -18.52330 -18.13619 -17.66496 -17.48235 -17.43581 -16.80052 -16.65186 -16.29984 -15.99475 -15.50309 -14.96770 -14.85082 -14.66628 -14.52903 -14.37715 -14.16334 -13.97210 -13.82341 -13.66111 -13.59191 -13.38260 -13.36085 -13.23775 -13.04114 -12.98260 -12.74875 -12.28633 -12.02595 -11.97342 -11.90957 -11.87544 -11.65380 -11.35822 -11.31824 -10.49678 -10.20055 -9.94381 -5.01707 -1.28957 -0.23675 -0.21077 0.36702 0.82968 1.01387 1.24504 1.66088 1.67946 2.01985 2.17447 2.38175 2.53379 2.79587 2.97407 3.17474 3.21330 3.55598 3.57329 3.62720 3.77916 3.80034 3.88216 4.07114 4.20260 4.23776 4.25891 4.27446 4.32579 4.38227 4.44405 4.61442 4.68281 4.69761 4.70515 4.76430 4.92923 5.02221 5.08011 5.29392 5.53823 6.58861 6.78679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.460 3.540 4 O -0.542 6.542 5 C -0.085 4.085 6 H 0.186 0.814 7 C -0.099 4.099 8 C -0.617 4.617 9 H 0.214 0.786 10 S 2.572 3.428 11 O -0.963 6.963 12 O -0.968 6.968 13 O -0.665 6.665 14 C 0.064 3.936 15 C -0.083 4.083 16 Br -0.053 7.053 17 C -0.090 4.090 18 C -0.103 4.103 19 O -0.546 6.546 20 Si 0.813 3.187 21 C -0.086 4.086 22 C -0.059 4.059 23 C -0.121 4.121 24 C -0.104 4.104 25 H 0.132 0.868 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.096 0.904 31 H 0.396 0.604 32 H -0.271 1.271 33 H -0.303 1.303 34 H 0.186 0.814 35 H 0.206 0.794 36 H 0.195 0.805 37 H 0.135 0.865 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -11.988 9.865 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.305 3.695 4 O -0.432 6.432 5 C -0.105 4.105 6 H 0.203 0.797 7 C -0.137 4.137 8 C -0.727 4.727 9 H 0.231 0.769 10 S 2.673 3.327 11 O -0.961 6.961 12 O -0.967 6.967 13 O -0.623 6.623 14 C 0.021 3.979 15 C -0.166 4.166 16 Br 0.033 6.967 17 C -0.093 4.093 18 C -0.210 4.210 19 O -0.353 6.353 20 Si 0.716 3.284 21 C -0.104 4.104 22 C -0.077 4.077 23 C -0.141 4.141 24 C -0.143 4.143 25 H 0.150 0.850 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.170 0.830 30 H 0.113 0.887 31 H 0.246 0.754 32 H -0.197 1.197 33 H -0.232 1.232 34 H 0.202 0.798 35 H 0.223 0.777 36 H 0.212 0.788 37 H 0.153 0.847 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.441 -10.606 7.871 14.694 hybrid contribution -1.534 0.491 -0.817 1.806 sum 4.907 -10.115 7.053 13.272 Atomic orbital electron populations 1.23552 0.75127 1.05778 1.02357 1.86502 1.24627 1.32635 1.83368 1.24250 0.92996 0.81173 0.71123 1.90705 1.68088 1.37782 1.46600 1.22685 0.85480 0.99993 1.02298 0.79717 1.22882 0.95113 1.00089 0.95588 1.32144 1.10029 1.14492 1.16077 0.76939 1.06078 0.73819 0.76429 0.76360 1.93658 1.68063 1.52551 1.81841 1.93602 1.51025 1.84819 1.67212 1.85748 1.28507 1.83749 1.64342 1.18253 0.79647 0.99088 1.00958 1.22224 0.97238 0.95321 1.01779 1.96793 1.93334 1.46501 1.60039 1.20539 0.92179 0.98634 0.97901 1.25747 1.08136 0.87245 0.99904 1.86587 1.94869 1.28963 1.24924 0.93829 0.69484 0.76179 0.88935 1.21739 1.02290 0.92067 0.94330 1.21851 0.89714 0.98724 0.97368 1.22069 1.01184 0.95743 0.95102 1.22804 0.93929 0.96409 1.01141 0.84962 0.91908 0.92515 0.89743 0.83017 0.88688 0.75425 1.19693 1.23158 0.79772 0.77677 0.78825 0.84669 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.17 10.57 -51.44 -0.54 -0.72 16 3 C 0.46 1.12 7.49 71.24 0.53 1.65 16 4 O -0.54 -5.90 15.65 21.98 0.34 -5.55 16 5 C -0.09 0.58 4.26 -10.96 -0.05 0.53 16 6 H 0.19 -2.94 8.14 -2.39 -0.02 -2.96 16 7 C -0.10 0.72 7.21 31.18 0.22 0.94 16 8 C -0.62 4.11 3.75 31.12 0.12 4.23 16 9 H 0.21 -3.66 6.04 -2.39 -0.01 -3.67 16 10 S 2.57 17.69 5.09 -56.49 -0.29 17.40 16 11 O -0.96 -11.07 15.68 -118.57 -1.86 -12.93 16 12 O -0.97 -15.73 17.43 -118.57 -2.07 -17.80 16 13 O -0.66 -3.83 9.39 -61.70 -0.58 -4.41 16 14 C 0.06 0.10 4.72 22.52 0.11 0.20 16 15 C -0.08 -0.46 5.68 22.40 0.13 -0.34 16 16 Br -0.05 -0.68 30.61 -20.37 -0.62 -1.30 16 17 C -0.09 0.13 5.26 -19.86 -0.10 0.02 16 18 C -0.10 0.02 2.02 71.23 0.14 0.16 16 19 O -0.55 -0.91 12.68 -148.98 -1.89 -2.80 16 20 Si 0.81 -5.10 29.91 68.60 2.05 -3.05 16 21 C -0.09 0.95 8.66 22.28 0.19 1.14 16 22 C -0.06 0.89 10.04 22.26 0.22 1.11 16 23 C -0.12 1.25 8.50 22.36 0.19 1.44 16 24 C -0.10 0.41 6.99 31.12 0.22 0.63 16 25 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 27 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 28 H 0.08 -0.10 7.50 -2.39 -0.02 -0.12 16 29 H 0.15 -2.44 8.14 -2.39 -0.02 -2.45 16 30 H 0.10 0.41 7.24 -2.39 -0.02 0.39 16 31 H 0.40 -3.11 8.70 -74.06 -0.64 -3.75 16 32 H -0.27 0.87 7.11 99.48 0.71 1.58 16 33 H -0.30 -0.86 7.11 99.48 0.71 -0.15 16 34 H 0.19 -3.44 5.12 -2.91 -0.01 -3.46 16 35 H 0.21 -5.10 8.06 -2.91 -0.02 -5.12 16 36 H 0.19 -3.79 6.84 -2.91 -0.02 -3.81 16 37 H 0.14 -1.31 8.14 -2.39 -0.02 -1.33 16 38 H 0.08 0.23 7.40 -2.39 -0.02 0.21 16 Total: 0.00 -42.30 352.07 -1.80 -44.10 By element: Atomic # 1 Polarization: -26.35 SS G_CDS: 0.53 Total: -25.82 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 3.12 Total: 12.88 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -6.59 Total: -44.21 kcal Atomic # 14 Polarization: -5.10 SS G_CDS: 2.05 Total: -3.05 kcal Atomic # 16 Polarization: 17.69 SS G_CDS: -0.29 Total: 17.40 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -0.62 Total: -1.30 kcal Total: -42.30 -1.80 -44.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.497 kcal (2) G-P(sol) polarization free energy of solvation -42.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds