Wall clock time and date at job start Mon Mar 8 2021 08:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86297 * 109.47178 * 2 1 4 4 C 1.86301 * 109.46692 * 240.00456 * 2 1 3 5 5 C 1.86300 * 109.47258 * 120.00451 * 2 1 3 6 6 C 1.53002 * 109.47139 * 59.99531 * 5 2 1 7 7 C 1.52999 * 109.47213 * 179.97438 * 6 5 2 8 8 S 1.81395 * 109.46986 * 180.02562 * 7 6 5 9 9 O 1.42105 * 110.54530 * 291.62628 * 8 7 6 10 10 O 1.42101 * 110.54333 * 68.37799 * 8 7 6 11 11 O 1.52198 * 104.44745 * 180.02562 * 8 7 6 12 12 C 1.35920 * 113.99927 * 75.00113 * 11 8 7 13 13 C 1.38679 * 120.05723 * 89.99937 * 12 11 8 14 14 C 1.38190 * 119.95254 * 179.97438 * 13 12 11 15 15 C 1.38244 * 120.07269 * 359.97438 * 14 13 12 16 16 C 1.38287 * 120.11406 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.97332 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.46761 * 254.99559 * 17 16 15 19 19 Si 1.86296 * 109.47391 * 14.99135 * 17 16 15 20 20 H 1.48508 * 109.46990 * 60.00699 * 19 17 16 21 21 H 1.48502 * 109.47053 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47399 * 300.00380 * 19 17 16 23 23 C 1.38194 * 120.04763 * 359.77878 * 16 15 14 24 24 Br 1.89098 * 120.03486 * 180.25429 * 23 16 15 25 25 H 1.08998 * 109.46557 * 300.00136 * 1 2 3 26 26 H 1.09000 * 109.46909 * 59.99312 * 1 2 3 27 27 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46979 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47763 * 300.00165 * 3 2 1 30 30 H 1.08999 * 109.47081 * 60.00782 * 3 2 1 31 31 H 1.08996 * 109.47185 * 299.99828 * 4 2 1 32 32 H 1.08995 * 109.47791 * 59.99992 * 4 2 1 33 33 H 1.09005 * 109.46862 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46664 * 299.99684 * 5 2 1 35 35 H 1.08995 * 109.47361 * 179.97438 * 5 2 1 36 36 H 1.09004 * 109.46811 * 60.00144 * 6 5 2 37 37 H 1.09005 * 109.47229 * 300.00279 * 6 5 2 38 38 H 1.09003 * 109.46593 * 60.00151 * 7 6 5 39 39 H 1.08994 * 109.46870 * 300.00519 * 7 6 5 40 40 H 1.08000 * 120.02466 * 359.97438 * 13 12 11 41 41 H 1.07994 * 119.96392 * 180.02562 * 14 13 12 42 42 H 1.07991 * 119.94241 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47076 * 134.99807 * 17 16 15 44 44 H 0.96696 * 114.00674 * 59.99792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 6 1.9740 -2.3208 1.5210 7 6 2.4846 -3.0424 2.7698 8 16 1.8804 -4.7528 2.7694 9 8 0.4730 -4.7846 2.9635 10 8 2.4930 -5.4977 1.7258 11 8 2.4486 -5.3565 4.0457 12 6 1.8169 -4.9500 5.1784 13 6 0.7301 -5.6630 5.6618 14 6 0.0898 -5.2481 6.8139 15 6 0.5318 -4.1233 7.4853 16 6 1.6152 -3.4101 7.0059 17 6 2.0947 -2.1848 7.7407 18 8 1.6965 -1.0140 7.0248 19 14 1.3489 -2.1526 9.4475 20 1 1.7628 -3.3694 10.1916 21 1 1.8210 -0.9449 10.1713 22 1 -0.1318 -2.1177 9.3402 23 6 2.2616 -3.8231 5.8564 24 35 3.7476 -2.8517 5.2052 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5741 1.7564 -0.0005 29 1 2.1208 2.2704 -0.8899 30 1 2.1208 2.2702 0.8900 31 1 2.1206 -1.9058 -1.5213 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8785 -1.5210 34 1 2.1208 -0.3645 2.4110 35 1 3.5740 -0.8787 1.5208 36 1 2.3373 -2.8346 0.6309 37 1 0.8840 -2.3208 1.5210 38 1 2.1216 -2.5286 3.6601 39 1 3.5745 -3.0423 2.7693 40 1 0.3844 -6.5421 5.1381 41 1 -0.7563 -5.8035 7.1907 42 1 0.0301 -3.8012 8.3857 43 1 3.1816 -2.2105 7.8194 44 1 0.7397 -0.9255 6.9164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10910594_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:39:34 Heat of formation + Delta-G solvation = -139.714471 kcal Electronic energy + Delta-G solvation = -27728.058254 eV Core-core repulsion = 23750.760157 eV Total energy + Delta-G solvation = -3977.298097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.022 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46926 -40.07979 -38.26893 -37.67160 -37.16973 -36.05029 -33.94555 -32.54968 -30.68021 -29.71437 -28.50681 -28.42124 -28.33885 -27.21839 -24.92223 -23.37809 -23.04175 -21.37937 -19.59479 -18.96946 -18.82828 -18.16683 -17.62336 -17.13241 -16.88304 -16.37794 -16.10767 -15.66848 -15.33683 -15.06803 -14.92121 -14.56248 -14.51249 -14.26387 -14.16170 -14.07456 -13.77893 -13.68317 -13.57216 -13.42135 -13.28506 -13.24769 -13.20364 -13.15750 -13.13724 -13.09491 -13.05946 -12.42462 -12.36222 -12.24758 -12.01097 -11.86077 -11.62512 -11.06097 -10.83351 -10.80366 -10.70975 -10.55490 -10.31987 -10.08167 -1.17041 -0.46571 -0.29992 0.10067 0.81894 0.96291 1.20567 1.32978 1.72017 1.74131 1.84717 1.86036 1.95074 2.50301 2.62160 2.84322 2.97540 3.26737 3.38067 3.47729 3.52705 3.61702 3.71600 3.82465 4.04456 4.06207 4.24592 4.34325 4.46541 4.52852 4.58494 4.68797 4.71191 4.72611 4.75430 4.76416 4.76999 4.77212 4.79577 4.85718 4.95251 5.24581 5.31350 5.47000 5.54440 5.56200 6.31216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.001 2.999 3 C -0.449 4.449 4 C -0.453 4.453 5 C -0.403 4.403 6 C -0.098 4.098 7 C -0.650 4.650 8 S 2.577 3.423 9 O -0.948 6.948 10 O -0.919 6.919 11 O -0.658 6.658 12 C 0.098 3.902 13 C -0.078 4.078 14 C -0.076 4.076 15 C -0.107 4.107 16 C -0.076 4.076 17 C -0.092 4.092 18 O -0.523 6.523 19 Si 0.951 3.049 20 H -0.244 1.244 21 H -0.245 1.245 22 H -0.246 1.246 23 C -0.092 4.092 24 Br -0.005 7.005 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.127 0.873 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 2.566 4.445 5.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.198 2.802 3 C -0.556 4.556 4 C -0.561 4.561 5 C -0.489 4.489 6 C -0.137 4.137 7 C -0.779 4.779 8 S 2.674 3.326 9 O -0.946 6.946 10 O -0.918 6.918 11 O -0.616 6.616 12 C 0.054 3.946 13 C -0.098 4.098 14 C -0.094 4.094 15 C -0.126 4.126 16 C -0.079 4.079 17 C -0.203 4.203 18 O -0.328 6.328 19 Si 0.772 3.228 20 H -0.167 1.167 21 H -0.168 1.168 22 H -0.170 1.170 23 C -0.174 4.174 24 Br 0.082 6.918 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.144 0.856 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.498 2.276 4.798 5.517 hybrid contribution -0.175 0.062 -0.392 0.433 sum -1.673 2.338 4.406 5.261 Atomic orbital electron populations 1.26162 1.20677 1.04570 1.04543 0.79347 0.67292 0.67046 0.66545 1.26100 1.06224 1.18833 1.04466 1.26177 1.06362 1.08174 1.15362 1.26146 1.06218 1.00329 1.16215 1.20981 1.01468 0.97096 0.94157 1.31623 1.13695 1.23371 1.09181 1.06087 0.74822 0.77774 0.73888 1.93654 1.31179 1.86406 1.83365 1.93663 1.77531 1.68013 1.52549 1.85773 1.70253 1.76120 1.29485 1.17707 0.94566 0.95136 0.87238 1.21449 0.92401 0.99711 0.96270 1.21265 0.99224 0.95645 0.93263 1.21433 0.95499 0.95268 1.00386 1.20222 0.95551 0.98101 0.94001 1.25235 1.06428 0.83079 1.05510 1.86612 1.28354 1.39893 1.77929 0.85658 0.80103 0.82448 0.74602 1.16732 1.16830 1.16975 1.22071 0.98376 0.97221 0.99704 1.96828 1.37370 1.72458 1.85192 0.91147 0.91175 0.91138 0.91284 0.91215 0.91227 0.91117 0.91164 0.91168 0.89819 0.90110 0.90083 0.90030 0.83902 0.83975 0.82810 0.82914 0.83733 0.85563 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.63 8.65 101.05 0.87 1.50 16 2 Si 1.00 -2.52 12.19 -169.99 -2.07 -4.59 16 3 C -0.45 0.63 8.65 101.05 0.87 1.51 16 4 C -0.45 0.51 8.65 101.05 0.87 1.38 16 5 C -0.40 0.73 4.45 37.16 0.17 0.89 16 6 C -0.10 0.07 4.59 -26.73 -0.12 -0.06 16 7 C -0.65 -0.08 3.84 37.16 0.14 0.06 16 8 S 2.58 7.47 5.17 -107.50 -0.56 6.92 16 9 O -0.95 -3.88 16.26 -67.04 -1.09 -4.97 16 10 O -0.92 -5.56 18.09 -67.03 -1.21 -6.78 16 11 O -0.66 -1.75 9.50 -51.81 -0.49 -2.24 16 12 C 0.10 0.14 4.79 -39.20 -0.19 -0.04 16 13 C -0.08 0.01 9.05 -39.44 -0.36 -0.35 16 14 C -0.08 0.19 10.04 -39.60 -0.40 -0.21 16 15 C -0.11 0.28 8.66 -39.56 -0.34 -0.06 16 16 C -0.08 0.10 5.26 -104.62 -0.55 -0.45 16 17 C -0.09 0.20 2.02 36.01 0.07 0.28 16 18 O -0.52 1.09 12.71 -35.23 -0.45 0.64 16 19 Si 0.95 -2.78 25.49 -169.99 -4.33 -7.11 16 20 H -0.24 0.56 7.11 56.52 0.40 0.96 16 21 H -0.24 0.30 7.11 56.52 0.40 0.70 16 22 H -0.25 0.89 6.73 56.52 0.38 1.27 16 23 C -0.09 -0.04 5.54 -39.38 -0.22 -0.26 16 24 Br -0.01 0.00 25.89 -68.01 -1.76 -1.76 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 35 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.08 -0.11 7.79 -51.93 -0.40 -0.52 16 37 H 0.08 -0.14 7.79 -51.93 -0.40 -0.54 16 38 H 0.14 -0.12 5.40 -51.92 -0.28 -0.40 16 39 H 0.14 -0.12 6.80 -51.93 -0.35 -0.48 16 40 H 0.15 -0.20 8.06 -52.49 -0.42 -0.62 16 41 H 0.15 -0.83 8.06 -52.49 -0.42 -1.25 16 42 H 0.15 -0.69 4.88 -52.49 -0.26 -0.94 16 43 H 0.13 -0.28 7.21 -51.93 -0.37 -0.66 16 44 H 0.38 -2.05 8.70 45.56 0.40 -1.65 16 LS Contribution 382.37 15.07 5.76 5.76 Total: 0.00 -8.49 382.37 -11.24 -19.73 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: -5.87 Total: -9.79 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.83 Total: 4.19 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -3.24 Total: -13.34 kcal Atomic # 14 Polarization: -5.30 SS G_CDS: -6.41 Total: -11.70 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -0.56 Total: 6.92 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -1.76 Total: -1.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -8.49 -11.24 -19.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.980 kcal (2) G-P(sol) polarization free energy of solvation -8.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds