Wall clock time and date at job start Mon Mar 8 2021 08:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86297 * 109.47178 * 2 1 4 4 C 1.86301 * 109.46692 * 240.00456 * 2 1 3 5 5 C 1.86300 * 109.47258 * 120.00451 * 2 1 3 6 6 C 1.53002 * 109.47139 * 59.99531 * 5 2 1 7 7 C 1.52999 * 109.47213 * 179.97438 * 6 5 2 8 8 S 1.81395 * 109.46986 * 180.02562 * 7 6 5 9 9 O 1.42105 * 110.54530 * 291.62628 * 8 7 6 10 10 O 1.42101 * 110.54333 * 68.37799 * 8 7 6 11 11 O 1.52198 * 104.44745 * 180.02562 * 8 7 6 12 12 C 1.35920 * 113.99927 * 75.00113 * 11 8 7 13 13 C 1.38679 * 120.05723 * 89.99937 * 12 11 8 14 14 C 1.38190 * 119.95254 * 179.97438 * 13 12 11 15 15 C 1.38244 * 120.07269 * 359.97438 * 14 13 12 16 16 C 1.38287 * 120.11406 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.97332 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.46761 * 254.99559 * 17 16 15 19 19 Si 1.86296 * 109.47391 * 14.99135 * 17 16 15 20 20 H 1.48508 * 109.46990 * 60.00699 * 19 17 16 21 21 H 1.48502 * 109.47053 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47399 * 300.00380 * 19 17 16 23 23 C 1.38194 * 120.04763 * 359.77878 * 16 15 14 24 24 Br 1.89098 * 120.03486 * 180.25429 * 23 16 15 25 25 H 1.08998 * 109.46557 * 300.00136 * 1 2 3 26 26 H 1.09000 * 109.46909 * 59.99312 * 1 2 3 27 27 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46979 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47763 * 300.00165 * 3 2 1 30 30 H 1.08999 * 109.47081 * 60.00782 * 3 2 1 31 31 H 1.08996 * 109.47185 * 299.99828 * 4 2 1 32 32 H 1.08995 * 109.47791 * 59.99992 * 4 2 1 33 33 H 1.09005 * 109.46862 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46664 * 299.99684 * 5 2 1 35 35 H 1.08995 * 109.47361 * 179.97438 * 5 2 1 36 36 H 1.09004 * 109.46811 * 60.00144 * 6 5 2 37 37 H 1.09005 * 109.47229 * 300.00279 * 6 5 2 38 38 H 1.09003 * 109.46593 * 60.00151 * 7 6 5 39 39 H 1.08994 * 109.46870 * 300.00519 * 7 6 5 40 40 H 1.08000 * 120.02466 * 359.97438 * 13 12 11 41 41 H 1.07994 * 119.96392 * 180.02562 * 14 13 12 42 42 H 1.07991 * 119.94241 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47076 * 134.99807 * 17 16 15 44 44 H 0.96696 * 114.00674 * 59.99792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 6 1.9740 -2.3208 1.5210 7 6 2.4846 -3.0424 2.7698 8 16 1.8804 -4.7528 2.7694 9 8 0.4730 -4.7846 2.9635 10 8 2.4930 -5.4977 1.7258 11 8 2.4486 -5.3565 4.0457 12 6 1.8169 -4.9500 5.1784 13 6 0.7301 -5.6630 5.6618 14 6 0.0898 -5.2481 6.8139 15 6 0.5318 -4.1233 7.4853 16 6 1.6152 -3.4101 7.0059 17 6 2.0947 -2.1848 7.7407 18 8 1.6965 -1.0140 7.0248 19 14 1.3489 -2.1526 9.4475 20 1 1.7628 -3.3694 10.1916 21 1 1.8210 -0.9449 10.1713 22 1 -0.1318 -2.1177 9.3402 23 6 2.2616 -3.8231 5.8564 24 35 3.7476 -2.8517 5.2052 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5741 1.7564 -0.0005 29 1 2.1208 2.2704 -0.8899 30 1 2.1208 2.2702 0.8900 31 1 2.1206 -1.9058 -1.5213 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8785 -1.5210 34 1 2.1208 -0.3645 2.4110 35 1 3.5740 -0.8787 1.5208 36 1 2.3373 -2.8346 0.6309 37 1 0.8840 -2.3208 1.5210 38 1 2.1216 -2.5286 3.6601 39 1 3.5745 -3.0423 2.7693 40 1 0.3844 -6.5421 5.1381 41 1 -0.7563 -5.8035 7.1907 42 1 0.0301 -3.8012 8.3857 43 1 3.1816 -2.2105 7.8194 44 1 0.7397 -0.9255 6.9164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10910594_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:39:33 Heat of formation + Delta-G solvation = -136.364877 kcal Electronic energy + Delta-G solvation = -27727.913005 eV Core-core repulsion = 23750.760157 eV Total energy + Delta-G solvation = -3977.152847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.022 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.48733 -40.00552 -38.53508 -37.49992 -37.42995 -36.00987 -33.85175 -32.44420 -30.60515 -29.60960 -28.41833 -28.29952 -28.24543 -27.05470 -24.90214 -23.24980 -22.97211 -21.40736 -19.69893 -18.98548 -18.87766 -18.16836 -17.48258 -17.10234 -16.89127 -16.24051 -16.01029 -15.68521 -15.15746 -14.99959 -14.77628 -14.55607 -14.50582 -14.18531 -14.07567 -13.98403 -13.73834 -13.63501 -13.58872 -13.45927 -13.42099 -13.33602 -13.17584 -13.10084 -13.05157 -12.98657 -12.97735 -12.31670 -12.17426 -12.12336 -11.89700 -11.67848 -11.57213 -11.03201 -10.70865 -10.67734 -10.49450 -10.45414 -10.23040 -10.01219 -1.26876 -0.38061 -0.23291 0.14150 0.79397 1.11905 1.46378 1.57119 1.90850 1.95730 2.01606 2.02429 2.08838 2.36422 2.69907 2.73522 3.08878 3.43587 3.54218 3.61578 3.66107 3.68939 3.77147 3.97202 4.14850 4.20970 4.35077 4.44824 4.61155 4.62433 4.68738 4.76828 4.82249 4.84117 4.86834 4.86991 4.88904 4.89763 4.94407 5.00414 5.08367 5.40377 5.46650 5.60014 5.66480 5.68218 6.71069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.069 2.931 3 C -0.462 4.462 4 C -0.474 4.474 5 C -0.411 4.411 6 C -0.114 4.114 7 C -0.635 4.635 8 S 2.576 3.424 9 O -0.966 6.966 10 O -0.963 6.963 11 O -0.666 6.666 12 C 0.069 3.931 13 C -0.095 4.095 14 C -0.067 4.067 15 C -0.100 4.100 16 C -0.077 4.077 17 C -0.097 4.097 18 O -0.536 6.536 19 Si 0.985 3.015 20 H -0.252 1.252 21 H -0.273 1.273 22 H -0.226 1.226 23 C -0.104 4.104 24 Br -0.013 7.013 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.121 0.879 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 3.349 5.866 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.261 2.739 3 C -0.569 4.569 4 C -0.579 4.579 5 C -0.496 4.496 6 C -0.153 4.153 7 C -0.766 4.766 8 S 2.677 3.323 9 O -0.965 6.965 10 O -0.961 6.961 11 O -0.625 6.625 12 C 0.025 3.975 13 C -0.116 4.116 14 C -0.085 4.085 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.206 4.206 18 O -0.343 6.343 19 Si 0.806 3.194 20 H -0.175 1.175 21 H -0.198 1.198 22 H -0.149 1.149 23 C -0.186 4.186 24 Br 0.074 6.926 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.204 0.796 42 H 0.189 0.811 43 H 0.139 0.861 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.541 3.022 6.189 7.341 hybrid contribution 0.140 -0.129 -0.767 0.790 sum -2.401 2.893 5.422 6.598 Atomic orbital electron populations 1.26355 1.22010 1.04507 1.04616 0.78302 0.65539 0.65329 0.64719 1.26266 1.06322 1.19857 1.04447 1.26428 1.06511 1.08406 1.16587 1.26279 1.06712 0.99455 1.17191 1.21222 1.02362 0.97845 0.93852 1.31553 1.14195 1.20514 1.10334 1.06011 0.74310 0.78662 0.73328 1.93607 1.32288 1.87082 1.83508 1.93600 1.78061 1.69975 1.54458 1.85731 1.70343 1.76524 1.29878 1.18074 0.95783 0.96368 0.87281 1.21735 0.92435 1.00029 0.97393 1.21674 0.99370 0.95493 0.91940 1.21777 0.94695 0.94650 1.00813 1.20459 0.95695 0.98437 0.93372 1.25368 1.06467 0.82685 1.06056 1.86581 1.29895 1.39799 1.78022 0.85198 0.80834 0.80602 0.72801 1.17546 1.19767 1.14864 1.22167 0.98624 0.97253 1.00524 1.96795 1.37930 1.72457 1.85456 0.90827 0.91383 0.91286 0.91333 0.91461 0.91038 0.91391 0.91360 0.91229 0.89001 0.89595 0.89645 0.89051 0.82725 0.83065 0.82555 0.79648 0.81132 0.86113 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.38 8.65 113.37 0.98 2.36 16 2 Si 1.07 -5.67 12.19 68.60 0.84 -4.83 16 3 C -0.46 1.46 8.65 113.37 0.98 2.44 16 4 C -0.47 0.87 8.65 113.37 0.98 1.85 16 5 C -0.41 1.70 4.45 71.98 0.32 2.02 16 6 C -0.11 0.13 4.59 30.59 0.14 0.27 16 7 C -0.63 -0.57 3.84 71.98 0.28 -0.30 16 8 S 2.58 19.35 5.17 -56.49 -0.29 19.06 16 9 O -0.97 -9.38 16.26 -118.57 -1.93 -11.30 16 10 O -0.96 -14.03 18.09 -118.57 -2.15 -16.18 16 11 O -0.67 -4.74 9.50 -61.75 -0.59 -5.32 16 12 C 0.07 0.26 4.79 22.52 0.11 0.37 16 13 C -0.10 0.01 9.05 22.36 0.20 0.21 16 14 C -0.07 0.44 10.04 22.26 0.22 0.66 16 15 C -0.10 0.72 8.66 22.28 0.19 0.91 16 16 C -0.08 0.26 5.26 -19.86 -0.10 0.15 16 17 C -0.10 0.49 2.02 71.24 0.14 0.64 16 18 O -0.54 2.64 12.71 -148.98 -1.89 0.74 16 19 Si 0.98 -7.08 25.49 68.60 1.75 -5.33 16 20 H -0.25 1.49 7.11 99.48 0.71 2.20 16 21 H -0.27 0.69 7.11 99.48 0.71 1.39 16 22 H -0.23 2.34 6.73 99.48 0.67 3.01 16 23 C -0.10 -0.13 5.54 22.40 0.12 0.00 16 24 Br -0.01 -0.02 25.89 -20.37 -0.53 -0.54 16 25 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H 0.07 -0.17 7.96 -2.39 -0.02 -0.18 16 27 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 28 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 29 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 32 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 34 H 0.09 -0.50 7.96 -2.39 -0.02 -0.52 16 35 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 37 H 0.09 -0.30 7.79 -2.38 -0.02 -0.32 16 38 H 0.15 -0.22 5.40 -2.39 -0.01 -0.23 16 39 H 0.15 -0.15 6.80 -2.39 -0.02 -0.17 16 40 H 0.16 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.19 -2.53 8.06 -2.91 -0.02 -2.55 16 42 H 0.17 -2.16 4.88 -2.92 -0.01 -2.18 16 43 H 0.12 -0.52 7.21 -2.38 -0.02 -0.54 16 44 H 0.39 -4.75 8.70 -74.06 -0.64 -5.39 16 Total: 0.00 -20.89 382.37 0.87 -20.03 By element: Atomic # 1 Polarization: -8.99 SS G_CDS: 1.09 Total: -7.90 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 4.57 Total: 11.58 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -6.55 Total: -32.06 kcal Atomic # 14 Polarization: -12.75 SS G_CDS: 2.58 Total: -10.16 kcal Atomic # 16 Polarization: 19.35 SS G_CDS: -0.29 Total: 19.06 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.53 Total: -0.54 kcal Total: -20.89 0.87 -20.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.339 kcal (2) G-P(sol) polarization free energy of solvation -20.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds