Wall clock time and date at job start Mon Mar 8 2021 09:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.47172 * 2 1 4 4 C 1.50706 * 109.47081 * 119.99830 * 2 1 3 5 5 C 1.38247 * 119.97759 * 254.97777 * 4 2 1 6 6 C 1.38281 * 120.11696 * 180.02562 * 5 4 2 7 7 C 1.38146 * 120.07054 * 359.68126 * 6 5 4 8 8 C 1.38722 * 119.95283 * 0.59294 * 7 6 5 9 9 O 1.35915 * 120.05697 * 179.70086 * 8 7 6 10 10 S 1.52194 * 114.00289 * 269.73187 * 9 8 7 11 11 O 1.42107 * 104.27300 * 318.92467 * 10 9 8 12 12 O 1.42106 * 104.27674 * 191.07388 * 10 9 8 13 13 C 1.81392 * 104.45516 * 74.99719 * 10 9 8 14 14 H 1.09007 * 112.85093 * 311.20394 * 13 10 9 15 15 C 1.53786 * 113.68815 * 82.46445 * 13 10 9 16 16 C 1.53789 * 87.07910 * 139.99443 * 15 13 10 17 17 H 1.08993 * 113.68772 * 220.00800 * 16 15 13 18 18 O 1.42897 * 113.61018 * 89.11535 * 16 15 13 19 19 C 1.42905 * 113.99732 * 112.50412 * 18 16 15 20 20 C 1.50701 * 109.47046 * 179.97438 * 19 18 16 21 21 C 1.38234 * 120.00243 * 89.99998 * 20 19 18 22 22 C 1.38234 * 120.00240 * 180.02562 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 23 22 26 26 C 1.53777 * 113.61653 * 180.02562 * 13 10 9 27 27 C 1.38235 * 119.97763 * 75.00252 * 4 2 1 28 28 Br 1.89104 * 120.03419 * 359.95111 * 27 4 2 29 29 H 0.96701 * 113.99957 * 59.99974 * 1 2 3 30 30 H 1.08998 * 109.47332 * 240.00082 * 2 1 3 31 31 H 1.48503 * 110.00114 * 60.00350 * 3 2 1 32 32 H 1.48510 * 109.99853 * 181.31732 * 3 2 1 33 33 H 1.07999 * 119.94112 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.96524 * 179.97438 * 6 5 4 35 35 H 1.07997 * 120.02293 * 180.29993 * 7 6 5 36 36 H 1.08992 * 113.61430 * 25.44755 * 15 13 10 37 37 H 1.08996 * 113.61714 * 254.53880 * 15 13 10 38 38 H 1.08996 * 109.47095 * 59.99642 * 19 18 16 39 39 H 1.08999 * 109.47350 * 299.99578 * 19 18 16 40 40 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99927 * 180.24100 * 24 23 22 44 44 H 1.08001 * 120.00310 * 179.72165 * 25 24 23 45 45 H 1.08995 * 113.61591 * 105.39029 * 26 13 10 46 46 H 1.09000 * 113.69127 * 334.49436 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4542 0.0174 2.2832 6 6 2.9164 -0.6315 3.4135 7 6 2.8508 -2.0089 3.4964 8 6 2.3320 -2.7425 2.4395 9 8 2.2720 -4.0982 2.5163 10 16 3.5108 -4.8038 1.9835 11 8 3.8505 -4.0773 0.8104 12 8 3.1323 -6.1718 1.9142 13 6 4.7632 -4.5544 3.2718 14 1 4.8365 -3.5161 3.5955 15 6 4.6621 -5.5563 4.4341 16 6 6.1992 -5.6053 4.4219 17 1 6.6066 -6.6043 4.5769 18 8 6.8098 -4.6208 5.2584 19 6 7.4925 -5.1629 6.3907 20 6 8.0955 -4.0420 7.1977 21 6 7.3658 -3.4501 8.2117 22 6 7.9187 -2.4216 8.9515 23 6 9.1993 -1.9813 8.6738 24 6 9.9310 -2.5767 7.6633 25 6 9.3781 -3.6052 6.9235 26 6 6.1223 -5.1937 2.9417 27 6 1.8694 -2.0893 1.3057 28 35 1.1535 -3.0845 -0.1342 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 1.5616 2.4679 1.2085 32 1 3.5347 1.7703 -0.0321 33 1 2.5018 1.0946 2.2227 34 1 3.3248 -0.0606 4.2342 35 1 3.2076 -2.5146 4.3814 36 1 4.1930 -6.5003 4.1571 37 1 4.2462 -5.1272 5.3456 38 1 8.2831 -5.8324 6.0521 39 1 6.7869 -5.7175 7.0093 40 1 6.3635 -3.7908 8.4253 41 1 7.3484 -1.9590 9.7435 42 1 9.6296 -1.1748 9.2489 43 1 10.9329 -2.2353 7.4489 44 1 9.9480 -4.0674 6.1311 45 1 6.8848 -4.4720 2.6489 46 1 6.0539 -6.0387 2.2566 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10910594_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:04 Heat of formation + Delta-G solvation = -65.404592 kcal Electronic energy + Delta-G solvation = -34706.298675 eV Core-core repulsion = 29897.079105 eV Total energy + Delta-G solvation = -4809.219570 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.39412 -40.91524 -40.06930 -39.90335 -38.26489 -37.56512 -37.16185 -37.11215 -33.79155 -32.80175 -32.52297 -31.90929 -30.42250 -27.73786 -27.18727 -27.13487 -26.49834 -24.82711 -23.59695 -23.15085 -22.39480 -21.76383 -21.01808 -19.63176 -18.98214 -18.69101 -18.49913 -18.09161 -17.83882 -17.65643 -17.31677 -16.77834 -16.71234 -16.29314 -15.91238 -15.80654 -15.50146 -15.38771 -14.96235 -14.89977 -14.68749 -14.43849 -14.37426 -14.28905 -14.11752 -13.95093 -13.79389 -13.72804 -13.59725 -13.42964 -13.32142 -13.21107 -13.09651 -12.82665 -12.34877 -12.28257 -12.17947 -12.07108 -12.01028 -11.91110 -11.83686 -11.32561 -11.19349 -10.73621 -10.42369 -10.30708 -9.93412 -9.92318 -9.87040 -5.09921 -1.15541 -0.35313 -0.28789 0.22410 0.40073 0.42541 0.90812 1.13217 1.52937 1.80598 1.96529 2.26567 2.48902 2.65626 2.85526 2.92270 3.02976 3.16127 3.29335 3.41538 3.47335 3.57202 3.65060 3.75850 3.77635 3.82041 3.83703 3.98217 4.01371 4.03792 4.13901 4.18426 4.22815 4.27530 4.32344 4.46158 4.49967 4.51461 4.55351 4.59995 4.61781 4.65575 4.72618 4.80935 4.87346 4.94721 5.02255 5.26643 5.43849 5.51870 5.54135 5.95742 6.01203 6.53894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.086 4.086 3 Si 0.694 3.306 4 C -0.031 4.031 5 C -0.101 4.101 6 C -0.080 4.080 7 C -0.118 4.118 8 C 0.095 3.905 9 O -0.655 6.655 10 S 2.585 3.415 11 O -0.936 6.936 12 O -0.915 6.915 13 C -0.642 4.642 14 H 0.157 0.843 15 C -0.131 4.131 16 C 0.079 3.921 17 H 0.090 0.910 18 O -0.356 6.356 19 C 0.101 3.899 20 C -0.095 4.095 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.098 4.098 26 C -0.107 4.107 27 C -0.047 4.047 28 Br 0.001 6.999 29 H 0.386 0.614 30 H 0.086 0.914 31 H -0.246 1.246 32 H -0.249 1.249 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 4.322 2.231 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.196 4.196 3 Si 0.594 3.406 4 C -0.033 4.033 5 C -0.120 4.120 6 C -0.099 4.099 7 C -0.139 4.139 8 C 0.051 3.949 9 O -0.613 6.613 10 S 2.680 3.320 11 O -0.934 6.934 12 O -0.913 6.913 13 C -0.749 4.749 14 H 0.175 0.825 15 C -0.169 4.169 16 C 0.019 3.981 17 H 0.108 0.892 18 O -0.275 6.275 19 C 0.025 3.975 20 C -0.095 4.095 21 C -0.117 4.117 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.116 4.116 26 C -0.145 4.145 27 C -0.129 4.129 28 Br 0.088 6.912 29 H 0.234 0.766 30 H 0.104 0.896 31 H -0.170 1.170 32 H -0.173 1.173 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.120 0.880 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.847 4.053 2.088 5.375 hybrid contribution 0.509 -0.556 1.094 1.329 sum 3.355 3.497 3.182 5.798 Atomic orbital electron populations 1.86505 1.15934 1.82054 1.49683 1.24842 0.86951 1.11111 0.96705 0.94780 0.81196 0.77302 0.87302 1.19240 0.97706 0.90676 0.95708 1.21286 0.97537 1.00404 0.92820 1.21136 0.97471 0.93111 0.98137 1.21430 0.99921 0.94964 0.97541 1.17654 1.04622 0.77330 0.95282 1.85742 1.62898 1.24880 1.87790 1.05955 0.74863 0.75175 0.75984 1.93703 1.83220 1.71670 1.44839 1.93657 1.79535 1.32225 1.85878 1.32228 1.15544 1.09907 1.17198 0.82503 1.23261 0.98723 0.98153 0.96778 1.22832 0.92285 0.92564 0.90401 0.89168 1.87967 1.70363 1.32047 1.37140 1.21455 0.95549 0.93679 0.86827 1.19551 0.94690 0.98378 0.96918 1.21075 0.99407 0.95924 0.95283 1.21198 0.95821 0.97219 0.99907 1.21274 0.94674 0.99540 0.97501 1.21207 1.00203 0.96539 0.96137 1.21093 0.94904 0.96678 0.98925 1.22860 0.93265 1.01155 0.97265 1.21994 1.01851 0.94785 0.94309 1.96817 1.82655 1.70923 1.40825 0.76593 0.89600 1.17037 1.17327 0.84075 0.83019 0.82846 0.86777 0.88632 0.91863 0.91925 0.85935 0.85740 0.85797 0.85706 0.85862 0.87963 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.05 12.67 -35.23 -0.45 -0.49 16 2 C -0.09 -0.03 2.01 36.01 0.07 0.05 16 3 Si 0.69 -1.32 30.19 -169.99 -5.13 -6.45 16 4 C -0.03 -0.08 5.29 -104.62 -0.55 -0.63 16 5 C -0.10 -0.08 8.66 -39.56 -0.34 -0.42 16 6 C -0.08 0.06 10.04 -39.60 -0.40 -0.34 16 7 C -0.12 -0.02 8.51 -39.44 -0.34 -0.36 16 8 C 0.10 0.32 4.79 -39.20 -0.19 0.13 16 9 O -0.65 -2.51 9.41 -51.80 -0.49 -3.00 16 10 S 2.58 8.94 5.07 -107.50 -0.55 8.40 16 11 O -0.94 -4.98 14.93 -67.04 -1.00 -5.98 16 12 O -0.91 -5.43 17.28 -67.04 -1.16 -6.59 16 13 C -0.64 0.06 3.96 -25.92 -0.10 -0.04 16 14 H 0.16 -0.21 6.13 -51.93 -0.32 -0.53 16 15 C -0.13 0.14 7.47 -25.91 -0.19 -0.05 16 16 C 0.08 -0.09 4.38 -25.89 -0.11 -0.20 16 17 H 0.09 -0.27 7.87 -51.93 -0.41 -0.68 16 18 O -0.36 -0.11 10.25 -35.23 -0.36 -0.47 16 19 C 0.10 -0.09 5.90 36.01 0.21 0.12 16 20 C -0.10 -0.04 5.51 -104.62 -0.58 -0.62 16 21 C -0.10 -0.02 9.70 -39.58 -0.38 -0.41 16 22 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 23 C -0.11 0.00 10.05 -39.58 -0.40 -0.40 16 24 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 25 C -0.10 -0.04 9.70 -39.58 -0.38 -0.42 16 26 C -0.11 0.09 7.50 -25.90 -0.19 -0.10 16 27 C -0.05 -0.20 5.57 -39.38 -0.22 -0.42 16 28 Br 0.00 0.00 29.92 -68.01 -2.03 -2.03 16 29 H 0.39 -1.89 8.74 45.56 0.40 -1.50 16 30 H 0.09 -0.02 7.22 -51.93 -0.38 -0.39 16 31 H -0.25 -0.02 6.75 56.52 0.38 0.37 16 32 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 33 H 0.14 -0.10 4.89 -52.49 -0.26 -0.35 16 34 H 0.15 -0.59 8.06 -52.49 -0.42 -1.01 16 35 H 0.15 -0.42 7.28 -52.49 -0.38 -0.80 16 36 H 0.11 -0.15 7.44 -51.93 -0.39 -0.54 16 37 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 38 H 0.06 -0.13 8.08 -51.93 -0.42 -0.55 16 39 H 0.06 -0.13 8.09 -51.93 -0.42 -0.55 16 40 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 41 H 0.12 -0.21 8.06 -52.49 -0.42 -0.64 16 42 H 0.12 -0.21 8.06 -52.49 -0.42 -0.63 16 43 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 44 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 45 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 46 H 0.11 -0.22 8.10 -51.93 -0.42 -0.65 16 LS Contribution 411.19 15.07 6.20 6.20 Total: 0.00 -10.97 411.19 -15.45 -26.43 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: -5.59 Total: -11.07 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -4.89 Total: -4.95 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -3.45 Total: -16.53 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.13 Total: -6.45 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -0.55 Total: 8.40 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.03 Total: -2.03 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -10.97 -15.45 -26.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.977 kcal (2) G-P(sol) polarization free energy of solvation -10.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds