Wall clock time and date at job start Mon Mar 8 2021 09:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.47172 * 2 1 4 4 C 1.50706 * 109.47081 * 119.99830 * 2 1 3 5 5 C 1.38247 * 119.97759 * 254.97777 * 4 2 1 6 6 C 1.38281 * 120.11696 * 180.02562 * 5 4 2 7 7 C 1.38146 * 120.07054 * 359.68126 * 6 5 4 8 8 C 1.38722 * 119.95283 * 0.59294 * 7 6 5 9 9 O 1.35915 * 120.05697 * 179.70086 * 8 7 6 10 10 S 1.52194 * 114.00289 * 269.73187 * 9 8 7 11 11 O 1.42107 * 104.27300 * 318.92467 * 10 9 8 12 12 O 1.42106 * 104.27674 * 191.07388 * 10 9 8 13 13 C 1.81392 * 104.45516 * 74.99719 * 10 9 8 14 14 H 1.09007 * 112.85093 * 311.20394 * 13 10 9 15 15 C 1.53786 * 113.68815 * 82.46445 * 13 10 9 16 16 C 1.53789 * 87.07910 * 139.99443 * 15 13 10 17 17 H 1.08993 * 113.68772 * 220.00800 * 16 15 13 18 18 O 1.42897 * 113.61018 * 89.11535 * 16 15 13 19 19 C 1.42905 * 113.99732 * 112.50412 * 18 16 15 20 20 C 1.50701 * 109.47046 * 179.97438 * 19 18 16 21 21 C 1.38234 * 120.00243 * 89.99998 * 20 19 18 22 22 C 1.38234 * 120.00240 * 180.02562 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 23 22 26 26 C 1.53777 * 113.61653 * 180.02562 * 13 10 9 27 27 C 1.38235 * 119.97763 * 75.00252 * 4 2 1 28 28 Br 1.89104 * 120.03419 * 359.95111 * 27 4 2 29 29 H 0.96701 * 113.99957 * 59.99974 * 1 2 3 30 30 H 1.08998 * 109.47332 * 240.00082 * 2 1 3 31 31 H 1.48503 * 110.00114 * 60.00350 * 3 2 1 32 32 H 1.48510 * 109.99853 * 181.31732 * 3 2 1 33 33 H 1.07999 * 119.94112 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.96524 * 179.97438 * 6 5 4 35 35 H 1.07997 * 120.02293 * 180.29993 * 7 6 5 36 36 H 1.08992 * 113.61430 * 25.44755 * 15 13 10 37 37 H 1.08996 * 113.61714 * 254.53880 * 15 13 10 38 38 H 1.08996 * 109.47095 * 59.99642 * 19 18 16 39 39 H 1.08999 * 109.47350 * 299.99578 * 19 18 16 40 40 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99927 * 180.24100 * 24 23 22 44 44 H 1.08001 * 120.00310 * 179.72165 * 25 24 23 45 45 H 1.08995 * 113.61591 * 105.39029 * 26 13 10 46 46 H 1.09000 * 113.69127 * 334.49436 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4542 0.0174 2.2832 6 6 2.9164 -0.6315 3.4135 7 6 2.8508 -2.0089 3.4964 8 6 2.3320 -2.7425 2.4395 9 8 2.2720 -4.0982 2.5163 10 16 3.5108 -4.8038 1.9835 11 8 3.8505 -4.0773 0.8104 12 8 3.1323 -6.1718 1.9142 13 6 4.7632 -4.5544 3.2718 14 1 4.8365 -3.5161 3.5955 15 6 4.6621 -5.5563 4.4341 16 6 6.1992 -5.6053 4.4219 17 1 6.6066 -6.6043 4.5769 18 8 6.8098 -4.6208 5.2584 19 6 7.4925 -5.1629 6.3907 20 6 8.0955 -4.0420 7.1977 21 6 7.3658 -3.4501 8.2117 22 6 7.9187 -2.4216 8.9515 23 6 9.1993 -1.9813 8.6738 24 6 9.9310 -2.5767 7.6633 25 6 9.3781 -3.6052 6.9235 26 6 6.1223 -5.1937 2.9417 27 6 1.8694 -2.0893 1.3057 28 35 1.1535 -3.0845 -0.1342 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 1.5616 2.4679 1.2085 32 1 3.5347 1.7703 -0.0321 33 1 2.5018 1.0946 2.2227 34 1 3.3248 -0.0606 4.2342 35 1 3.2076 -2.5146 4.3814 36 1 4.1930 -6.5003 4.1571 37 1 4.2462 -5.1272 5.3456 38 1 8.2831 -5.8324 6.0521 39 1 6.7869 -5.7175 7.0093 40 1 6.3635 -3.7908 8.4253 41 1 7.3484 -1.9590 9.7435 42 1 9.6296 -1.1748 9.2489 43 1 10.9329 -2.2353 7.4489 44 1 9.9480 -4.0674 6.1311 45 1 6.8848 -4.4720 2.6489 46 1 6.0539 -6.0387 2.2566 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10910594_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:03 Heat of formation + Delta-G solvation = -65.044399 kcal Electronic energy + Delta-G solvation = -34706.283056 eV Core-core repulsion = 29897.079105 eV Total energy + Delta-G solvation = -4809.203951 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.52655 -40.83262 -40.01641 -39.94766 -38.55291 -37.55049 -37.41359 -37.06906 -33.88358 -32.72077 -32.59659 -31.82860 -30.56740 -27.69826 -27.11628 -27.07833 -26.44917 -24.94654 -23.51981 -23.17144 -22.30757 -21.84975 -21.01368 -19.75346 -19.11660 -18.84598 -18.46715 -18.06770 -17.85448 -17.62000 -17.29395 -16.72415 -16.66238 -16.33610 -15.89751 -15.83107 -15.49797 -15.33249 -14.97408 -14.87173 -14.81461 -14.42891 -14.34123 -14.29851 -14.16960 -13.91945 -13.86856 -13.68674 -13.63588 -13.52799 -13.42770 -13.37403 -13.20227 -12.87240 -12.33044 -12.22558 -12.14987 -12.09186 -11.95127 -11.90338 -11.78148 -11.48005 -11.30782 -10.62389 -10.42227 -10.32267 -10.08436 -9.86402 -9.80801 -4.94718 -1.31828 -0.40884 -0.39189 0.22415 0.28784 0.45928 0.75410 1.22024 1.65688 1.88980 1.93917 2.33460 2.37809 2.57286 2.83091 2.94174 3.04206 3.19041 3.39158 3.44004 3.46812 3.55755 3.72068 3.82686 3.88189 3.90256 3.90505 4.01646 4.11461 4.17917 4.26260 4.30049 4.32417 4.36272 4.42741 4.46901 4.57697 4.58589 4.63486 4.69079 4.72739 4.76501 4.79911 4.80635 4.86421 5.04588 5.11577 5.27746 5.51293 5.58735 5.61070 6.05060 6.13752 6.83253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.106 4.106 3 Si 0.790 3.210 4 C -0.050 4.050 5 C -0.111 4.111 6 C -0.069 4.069 7 C -0.115 4.115 8 C 0.073 3.927 9 O -0.664 6.664 10 S 2.577 3.423 11 O -0.965 6.965 12 O -0.952 6.952 13 C -0.619 4.619 14 H 0.174 0.826 15 C -0.133 4.133 16 C 0.081 3.919 17 H 0.111 0.889 18 O -0.370 6.370 19 C 0.099 3.901 20 C -0.107 4.107 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.112 4.112 26 C -0.116 4.116 27 C -0.077 4.077 28 Br -0.025 7.025 29 H 0.404 0.596 30 H 0.082 0.918 31 H -0.266 1.266 32 H -0.280 1.280 33 H 0.156 0.844 34 H 0.192 0.808 35 H 0.185 0.815 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 5.506 4.078 7.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.214 4.214 3 Si 0.691 3.309 4 C -0.053 4.053 5 C -0.130 4.130 6 C -0.086 4.086 7 C -0.135 4.135 8 C 0.029 3.971 9 O -0.622 6.622 10 S 2.677 3.323 11 O -0.963 6.963 12 O -0.951 6.951 13 C -0.731 4.731 14 H 0.191 0.809 15 C -0.171 4.171 16 C 0.022 3.978 17 H 0.129 0.871 18 O -0.289 6.289 19 C 0.023 3.977 20 C -0.107 4.107 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.130 4.130 26 C -0.155 4.155 27 C -0.160 4.160 28 Br 0.061 6.939 29 H 0.256 0.744 30 H 0.100 0.900 31 H -0.193 1.193 32 H -0.207 1.207 33 H 0.173 0.827 34 H 0.209 0.791 35 H 0.202 0.798 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.124 0.876 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.758 5.214 3.880 7.508 hybrid contribution 0.258 -0.888 0.604 1.105 sum 4.016 4.326 4.484 7.413 Atomic orbital electron populations 1.86455 1.16003 1.82741 1.51078 1.25246 0.87153 1.13167 0.95844 0.93615 0.77867 0.73846 0.85529 1.19675 0.98017 0.90393 0.97176 1.21598 0.97290 1.01157 0.92905 1.21645 0.95675 0.92910 0.98417 1.21845 0.98860 0.95402 0.97438 1.18074 1.05757 0.77136 0.96142 1.85699 1.63371 1.25516 1.87654 1.06033 0.75357 0.74219 0.76679 1.93658 1.83674 1.71747 1.47246 1.93599 1.80593 1.34047 1.86821 1.32101 1.13900 1.11355 1.15695 0.80871 1.23393 0.99175 0.97922 0.96656 1.22861 0.92029 0.93321 0.89626 0.87085 1.87939 1.70551 1.32838 1.37570 1.21544 0.96113 0.93373 0.86649 1.19790 0.94838 0.98837 0.97243 1.21319 1.00082 0.96041 0.95329 1.21465 0.96057 0.97339 1.00309 1.21536 0.94933 1.00021 0.97725 1.21457 1.00910 0.96670 0.96278 1.21320 0.95313 0.97007 0.99384 1.23064 0.92564 1.01681 0.98176 1.22220 1.03773 0.95601 0.94376 1.96747 1.83172 1.71694 1.42256 0.74419 0.90049 1.19270 1.20686 0.82713 0.79129 0.79775 0.86701 0.87109 0.90862 0.90686 0.84708 0.84372 0.84518 0.84588 0.85053 0.87557 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.64 12.67 -148.98 -1.89 -2.53 16 2 C -0.11 -0.16 2.01 71.24 0.14 -0.02 16 3 Si 0.79 -3.24 30.19 68.60 2.07 -1.16 16 4 C -0.05 -0.30 5.29 -19.86 -0.11 -0.41 16 5 C -0.11 -0.10 8.66 22.28 0.19 0.09 16 6 C -0.07 0.23 10.04 22.26 0.22 0.45 16 7 C -0.12 0.09 8.51 22.36 0.19 0.28 16 8 C 0.07 0.54 4.79 22.52 0.11 0.65 16 9 O -0.66 -6.08 9.41 -61.69 -0.58 -6.67 16 10 S 2.58 21.57 5.07 -56.49 -0.29 21.28 16 11 O -0.96 -12.46 14.93 -118.57 -1.77 -14.23 16 12 O -0.95 -13.37 17.28 -118.57 -2.05 -15.42 16 13 C -0.62 0.48 3.96 31.12 0.12 0.61 16 14 H 0.17 -0.73 6.13 -2.38 -0.01 -0.74 16 15 C -0.13 0.45 7.47 31.12 0.23 0.68 16 16 C 0.08 -0.32 4.38 31.14 0.14 -0.19 16 17 H 0.11 -0.89 7.87 -2.39 -0.02 -0.90 16 18 O -0.37 0.46 10.25 -148.98 -1.53 -1.07 16 19 C 0.10 -0.33 5.90 71.24 0.42 0.09 16 20 C -0.11 0.01 5.51 -19.86 -0.11 -0.10 16 21 C -0.11 0.07 9.70 22.27 0.22 0.28 16 22 C -0.13 0.11 10.05 22.27 0.22 0.33 16 23 C -0.12 0.06 10.05 22.27 0.22 0.29 16 24 C -0.14 0.01 10.05 22.27 0.22 0.24 16 25 C -0.11 -0.03 9.70 22.27 0.22 0.19 16 26 C -0.12 0.28 7.50 31.13 0.23 0.51 16 27 C -0.08 -0.80 5.57 22.40 0.12 -0.67 16 28 Br -0.03 -0.32 29.92 -20.37 -0.61 -0.93 16 29 H 0.40 -3.71 8.74 -74.06 -0.65 -4.36 16 30 H 0.08 0.12 7.22 -2.39 -0.02 0.10 16 31 H -0.27 0.21 6.75 99.48 0.67 0.88 16 32 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 33 H 0.16 -0.38 4.89 -2.91 -0.01 -0.40 16 34 H 0.19 -2.19 8.06 -2.91 -0.02 -2.21 16 35 H 0.19 -1.46 7.28 -2.91 -0.02 -1.48 16 36 H 0.11 -0.36 7.44 -2.39 -0.02 -0.38 16 37 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.07 -0.41 8.08 -2.39 -0.02 -0.43 16 39 H 0.07 -0.45 8.09 -2.39 -0.02 -0.47 16 40 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 41 H 0.14 -0.62 8.06 -2.91 -0.02 -0.65 16 42 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 44 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.11 -0.49 8.10 -2.39 -0.02 -0.51 16 Total: 0.00 -28.36 411.19 -3.23 -31.59 By element: Atomic # 1 Polarization: -14.55 SS G_CDS: 0.39 Total: -14.16 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 3.02 Total: 3.29 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -7.82 Total: -39.91 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.07 Total: -1.16 kcal Atomic # 16 Polarization: 21.57 SS G_CDS: -0.29 Total: 21.28 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.61 Total: -0.93 kcal Total: -28.36 -3.23 -31.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.455 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds