Wall clock time and date at job start Mon Mar 8 2021 09:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46982 * 2 1 4 4 C 1.34230 * 116.99776 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00246 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00139 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.46700 * 60.00121 * 6 4 3 8 8 C 1.52999 * 109.46957 * 180.02562 * 6 4 3 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47127 * 299.99539 * 9 8 6 11 11 F 1.39901 * 109.47234 * 300.00554 * 10 9 8 12 12 C 1.52996 * 109.47131 * 179.97438 * 10 9 8 13 13 S 1.81397 * 109.47138 * 184.99977 * 12 10 9 14 14 O 1.42094 * 110.54488 * 291.62640 * 13 12 10 15 15 O 1.42100 * 110.54107 * 68.37863 * 13 12 10 16 16 O 1.52208 * 104.44961 * 180.02562 * 13 12 10 17 17 C 1.35921 * 113.99963 * 75.00125 * 16 13 12 18 18 C 1.38793 * 120.05444 * 269.72528 * 17 16 13 19 19 Br 1.89093 * 120.03995 * 0.02562 * 18 17 16 20 20 C 1.38238 * 119.92152 * 179.81350 * 18 17 16 21 21 C 1.50700 * 119.97704 * 180.18328 * 20 18 17 22 22 O 1.42896 * 109.47176 * 285.25829 * 21 20 18 23 23 Si 1.86294 * 109.47223 * 165.25501 * 21 20 18 24 24 C 1.38243 * 120.04606 * 0.44368 * 20 18 17 25 25 C 1.38278 * 120.11928 * 359.78531 * 24 20 18 26 26 C 1.38143 * 120.07085 * 0.02562 * 25 24 20 27 27 C 1.53002 * 109.46817 * 60.00361 * 10 9 8 28 28 C 1.52996 * 109.46972 * 299.99733 * 27 10 9 29 29 H 1.09003 * 109.47564 * 300.00666 * 1 2 3 30 30 H 1.09011 * 109.46967 * 60.00126 * 1 2 3 31 31 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47422 * 239.99964 * 2 1 3 33 33 H 1.08998 * 109.46694 * 119.99955 * 2 1 3 34 34 H 1.08993 * 109.47839 * 60.00178 * 8 6 4 35 35 H 1.09000 * 109.47160 * 299.99740 * 8 6 4 36 36 H 1.09001 * 109.46801 * 59.99811 * 9 8 6 37 37 H 1.09001 * 109.46998 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47395 * 305.00575 * 12 10 9 39 39 H 1.09008 * 109.47057 * 65.00401 * 12 10 9 40 40 H 1.09005 * 109.46863 * 45.25539 * 21 20 18 41 41 H 0.96702 * 114.00075 * 299.99716 * 22 21 20 42 42 H 1.48496 * 110.00326 * 58.68390 * 23 21 20 43 43 H 1.48503 * 110.00182 * 180.02562 * 23 21 20 44 44 H 1.08002 * 119.94183 * 179.77227 * 24 20 18 45 45 H 1.08001 * 119.96704 * 179.97438 * 25 24 20 46 46 H 1.08008 * 120.02143 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47407 * 60.00219 * 27 10 9 48 48 H 1.09000 * 109.46986 * 179.97438 * 27 10 9 49 49 H 1.09001 * 109.46993 * 180.02562 * 28 27 10 50 50 H 1.09000 * 109.47380 * 299.99696 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8895 8 6 5.4487 2.8572 0.0001 9 6 6.0335 4.2711 0.0002 10 6 5.5621 5.0181 -1.2491 11 9 5.9934 4.3350 -2.3913 12 6 6.1463 6.4321 -1.2487 13 16 5.4712 7.3657 -2.6498 14 8 5.9591 6.8440 -3.8781 15 8 4.0857 7.6177 -2.4597 16 8 6.1212 8.7376 -2.5406 17 6 7.4243 8.7642 -2.9264 18 6 8.4292 8.5336 -1.9973 19 35 7.9874 8.1812 -0.1928 20 6 9.7534 8.5575 -2.3936 21 6 10.8454 8.3032 -1.3866 22 8 11.0019 9.4532 -0.5530 23 14 12.4447 7.9602 -2.2783 24 6 10.0768 8.8199 -3.7118 25 6 9.0772 9.0546 -4.6380 26 6 7.7522 9.0281 -4.2482 27 6 4.0342 5.0981 -1.2492 28 6 3.4494 3.6843 -1.2493 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7847 2.3248 -0.8895 35 1 5.7845 2.3255 0.8904 36 1 5.6974 4.8032 0.8902 37 1 7.1220 4.2141 0.0008 38 1 5.8834 6.9336 -0.3173 39 1 7.2314 6.3769 -1.3379 40 1 10.5800 7.4426 -0.7725 41 1 11.2389 10.2581 -1.0337 42 1 12.8012 9.1130 -3.1437 43 1 13.5296 7.7071 -1.2963 44 1 11.1120 8.8418 -4.0188 45 1 9.3327 9.2598 -5.6671 46 1 6.9721 9.2119 -4.9722 47 1 3.6981 5.6303 -0.3594 48 1 3.6984 5.6307 -2.1390 49 1 2.3609 3.7414 -1.2499 50 1 3.7854 3.1522 -2.1393 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10910594_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:28:50 Heat of formation + Delta-G solvation = -216.806886 kcal Electronic energy + Delta-G solvation = -40830.217270 eV Core-core repulsion = 35299.899420 eV Total energy + Delta-G solvation = -5530.317850 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.07320 -42.54034 -41.78462 -40.05530 -39.13748 -38.57516 -37.68597 -37.63860 -37.48709 -34.58000 -33.71105 -32.64621 -32.43537 -32.10580 -30.63725 -29.11924 -27.12006 -25.18547 -24.86815 -24.19792 -23.56115 -23.26381 -22.03114 -21.51796 -20.88442 -19.75279 -19.15175 -18.91269 -18.78464 -18.21177 -17.91773 -17.71105 -17.53286 -17.22102 -17.12222 -16.75823 -16.50819 -16.31469 -16.27219 -15.67148 -15.35119 -15.13132 -15.02019 -14.94846 -14.61124 -14.56888 -14.47754 -14.25073 -14.20561 -13.83914 -13.73170 -13.65698 -13.55607 -13.47524 -13.26489 -13.25345 -13.20959 -13.16609 -13.10985 -12.92175 -12.85170 -12.53352 -12.28744 -12.24022 -11.99185 -11.87582 -11.76267 -11.71391 -11.56256 -11.41792 -11.17156 -11.04108 -10.71395 -10.28060 -10.04018 -4.89419 -1.39400 -0.40853 -0.24975 0.09676 0.71517 1.06576 1.22757 1.57693 1.59651 1.97796 2.07671 2.19295 2.57642 2.76411 3.03301 3.07373 3.22992 3.32784 3.41162 3.48528 3.54021 3.64511 3.67234 3.73860 3.77550 3.95394 3.97255 3.97833 4.00858 4.03195 4.12967 4.18990 4.25172 4.28305 4.30628 4.38480 4.51870 4.58912 4.60571 4.66686 4.77062 4.79525 4.87366 4.88529 4.92458 4.94332 4.99215 5.01440 5.07931 5.12452 5.23855 5.40350 5.42537 6.47293 6.63292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.538 6.538 6 C -0.079 4.079 7 H 0.144 0.856 8 C -0.107 4.107 9 C -0.123 4.123 10 C 0.132 3.868 11 F -0.206 7.206 12 C -0.676 4.676 13 S 2.585 3.415 14 O -0.958 6.958 15 O -0.942 6.942 16 O -0.661 6.661 17 C 0.064 3.936 18 C -0.105 4.105 19 Br -0.013 7.013 20 C -0.074 4.074 21 C -0.097 4.097 22 O -0.532 6.532 23 Si 0.774 3.226 24 C -0.091 4.091 25 C -0.067 4.067 26 C -0.094 4.094 27 C -0.177 4.177 28 C -0.108 4.108 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.127 0.873 41 H 0.388 0.612 42 H -0.256 1.256 43 H -0.301 1.301 44 H 0.177 0.823 45 H 0.187 0.813 46 H 0.157 0.843 47 H 0.130 0.870 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 1.656 -0.232 4.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.428 6.428 6 C -0.097 4.097 7 H 0.162 0.838 8 C -0.145 4.145 9 C -0.161 4.161 10 C 0.113 3.887 11 F -0.186 7.186 12 C -0.804 4.804 13 S 2.683 3.317 14 O -0.956 6.956 15 O -0.940 6.940 16 O -0.620 6.620 17 C 0.021 3.979 18 C -0.187 4.187 19 Br 0.074 6.926 20 C -0.076 4.076 21 C -0.205 4.205 22 O -0.340 6.340 23 Si 0.677 3.323 24 C -0.110 4.110 25 C -0.085 4.085 26 C -0.115 4.115 27 C -0.215 4.215 28 C -0.146 4.146 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.201 0.799 39 H 0.183 0.817 40 H 0.145 0.855 41 H 0.238 0.762 42 H -0.181 1.181 43 H -0.228 1.228 44 H 0.194 0.806 45 H 0.205 0.795 46 H 0.175 0.825 47 H 0.148 0.852 48 H 0.095 0.905 49 H 0.119 0.881 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.825 1.373 0.242 4.071 hybrid contribution -0.291 0.666 0.421 0.840 sum 3.534 2.039 0.663 4.134 Atomic orbital electron populations 1.21827 0.90670 1.04254 1.03769 1.23249 0.96932 0.79384 1.02437 1.86514 1.24186 1.33435 1.83452 1.24183 0.80608 0.93124 0.71100 1.90673 1.61114 1.44354 1.46626 1.21284 0.96629 0.88711 1.03101 0.83822 1.21451 0.91629 0.97186 1.04222 1.22137 1.03278 0.94723 0.95987 1.20739 0.94762 0.87619 0.85619 1.92940 1.91309 1.81451 1.52911 1.32256 1.15672 1.09316 1.23185 1.05790 0.75059 0.73806 0.77049 1.93642 1.80690 1.79237 1.42029 1.93631 1.30569 1.82506 1.87294 1.85742 1.31531 1.57673 1.87017 1.18081 0.77108 1.08458 0.94301 1.22168 0.95496 1.09432 0.91603 1.96759 1.93017 1.92858 1.09980 1.20368 0.91959 0.98729 0.96551 1.25513 1.05406 0.92571 0.96975 1.86673 1.91335 1.19828 1.36163 0.93862 0.71844 0.86952 0.79683 1.21815 1.02474 0.95835 0.90908 1.21704 0.89703 0.94491 1.02569 1.21765 1.00199 0.96659 0.92892 1.22791 0.92150 0.99471 1.07072 1.21453 1.02847 0.93843 0.96420 0.91098 0.91338 0.88589 0.91648 0.91262 0.91930 0.89350 0.86333 0.88133 0.79890 0.81659 0.85544 0.76248 1.18142 1.22836 0.80639 0.79529 0.82509 0.85167 0.90518 0.88100 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.41 10.29 71.98 0.74 1.15 16 2 C 0.05 0.10 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.51 10.12 -51.41 -0.52 -2.03 16 4 C 0.47 2.46 7.26 71.24 0.52 2.98 16 5 O -0.54 -6.26 15.73 21.95 0.35 -5.91 16 6 C -0.08 0.08 2.63 -11.54 -0.03 0.05 16 7 H 0.14 -1.00 8.14 -2.39 -0.02 -1.02 16 8 C -0.11 0.10 4.37 30.60 0.13 0.23 16 9 C -0.12 0.60 5.00 30.60 0.15 0.75 16 10 C 0.13 -0.02 0.89 -10.79 -0.01 -0.03 16 11 F -0.21 -1.20 15.33 44.97 0.69 -0.51 16 12 C -0.68 0.72 3.16 71.98 0.23 0.95 16 13 S 2.58 16.07 4.41 -56.49 -0.25 15.82 16 14 O -0.96 -9.85 15.96 -118.57 -1.89 -11.74 16 15 O -0.94 -10.03 15.64 -118.57 -1.85 -11.89 16 16 O -0.66 -3.58 9.50 -61.75 -0.59 -4.17 16 17 C 0.06 0.18 4.79 22.52 0.11 0.29 16 18 C -0.11 -0.01 5.54 22.40 0.12 0.12 16 19 Br -0.01 0.01 25.88 -20.37 -0.53 -0.52 16 20 C -0.07 0.31 5.26 -19.86 -0.10 0.20 16 21 C -0.10 0.49 2.02 71.24 0.14 0.64 16 22 O -0.53 1.32 12.68 -148.98 -1.89 -0.57 16 23 Si 0.77 -5.97 30.24 68.60 2.07 -3.90 16 24 C -0.09 0.74 8.66 22.28 0.19 0.93 16 25 C -0.07 0.49 10.04 22.26 0.22 0.71 16 26 C -0.09 0.08 9.05 22.36 0.20 0.28 16 27 C -0.18 0.04 4.32 30.59 0.13 0.17 16 28 C -0.11 0.01 5.01 30.59 0.15 0.16 16 29 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.07 0.19 8.13 -2.39 -0.02 0.17 16 33 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 34 H 0.06 0.23 7.76 -2.39 -0.02 0.21 16 35 H 0.09 -0.12 8.10 -2.39 -0.02 -0.14 16 36 H 0.12 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.18 -1.14 6.80 -2.39 -0.02 -1.16 16 39 H 0.17 -0.54 5.40 -2.39 -0.01 -0.55 16 40 H 0.13 -0.68 7.24 -2.38 -0.02 -0.70 16 41 H 0.39 -3.34 8.70 -74.06 -0.64 -3.98 16 42 H -0.26 1.83 6.68 99.48 0.66 2.49 16 43 H -0.30 -0.31 7.11 99.48 0.71 0.40 16 44 H 0.18 -2.38 4.85 -2.91 -0.01 -2.39 16 45 H 0.19 -2.68 8.06 -2.91 -0.02 -2.71 16 46 H 0.16 -0.37 8.06 -2.91 -0.02 -0.40 16 47 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.08 0.27 5.39 -2.39 -0.01 0.26 16 49 H 0.10 -0.18 8.11 -2.39 -0.02 -0.20 16 50 H 0.06 0.20 7.80 -2.39 -0.02 0.18 16 Total: 0.00 -27.69 423.28 -0.70 -28.39 By element: Atomic # 1 Polarization: -13.47 SS G_CDS: 0.36 Total: -13.11 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 3.35 Total: 10.13 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -6.40 Total: -36.30 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.69 Total: -0.51 kcal Atomic # 14 Polarization: -5.97 SS G_CDS: 2.07 Total: -3.90 kcal Atomic # 16 Polarization: 16.07 SS G_CDS: -0.25 Total: 15.82 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.53 Total: -0.52 kcal Total: -27.69 -0.70 -28.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.420 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds