Wall clock time and date at job start Mon Mar 8 2021 10:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00353 * 2 1 4 4 C 1.53003 * 112.84805 * 65.98713 * 3 2 1 5 5 F 1.39900 * 109.46807 * 283.51321 * 4 3 2 6 6 F 1.39899 * 109.47129 * 43.51505 * 4 3 2 7 7 F 1.39907 * 109.46909 * 163.51716 * 4 3 2 8 8 C 1.53783 * 113.61575 * 294.79164 * 3 2 1 9 9 C 1.53787 * 87.07778 * 270.79729 * 8 3 2 10 10 H 1.09006 * 113.61349 * 219.93401 * 9 8 3 11 11 C 1.52996 * 113.61427 * 89.11909 * 9 8 3 12 12 S 1.81399 * 109.47247 * 176.52554 * 11 9 8 13 13 O 1.42102 * 110.54180 * 68.37447 * 12 11 9 14 14 O 1.42099 * 110.54495 * 291.62440 * 12 11 9 15 15 O 1.52198 * 104.44860 * 179.97438 * 12 11 9 16 16 C 1.35913 * 113.99965 * 75.00530 * 15 12 11 17 17 C 1.38792 * 120.06365 * 89.99398 * 16 15 12 18 18 Br 1.89098 * 120.03169 * 359.95960 * 17 16 15 19 19 C 1.38241 * 119.92874 * 179.97438 * 17 16 15 20 20 C 1.50705 * 119.97414 * 180.02562 * 19 17 16 21 21 O 1.42894 * 109.47266 * 285.00478 * 20 19 17 22 22 Si 1.86301 * 109.46971 * 165.00042 * 20 19 17 23 23 C 1.38236 * 120.04737 * 0.27430 * 19 17 16 24 24 C 1.38288 * 120.11660 * 359.45713 * 23 19 17 25 25 C 1.38148 * 120.06951 * 0.53907 * 24 23 19 26 26 C 1.53779 * 87.17525 * 334.52530 * 9 8 3 27 27 H 1.08994 * 109.47622 * 182.48857 * 1 2 3 28 28 H 1.09002 * 109.47198 * 302.49715 * 1 2 3 29 29 H 1.09004 * 109.47061 * 62.49155 * 1 2 3 30 30 H 1.09004 * 113.61274 * 156.25315 * 8 3 2 31 31 H 1.08989 * 113.69070 * 25.35647 * 8 3 2 32 32 H 1.09002 * 109.47274 * 56.52732 * 11 9 8 33 33 H 1.09003 * 109.46910 * 296.52618 * 11 9 8 34 34 H 1.09001 * 109.47006 * 45.00335 * 20 19 17 35 35 H 0.96701 * 114.00232 * 180.02562 * 21 20 19 36 36 H 1.48499 * 110.00095 * 298.68340 * 22 20 19 37 37 H 1.48503 * 109.99700 * 60.00285 * 22 20 19 38 38 H 1.08002 * 119.94376 * 179.69783 * 23 19 17 39 39 H 1.07998 * 119.96606 * 180.29203 * 24 23 19 40 40 H 1.08001 * 120.02241 * 179.70478 * 25 24 23 41 41 H 1.08998 * 113.61649 * 140.02178 * 26 9 8 42 42 H 1.08998 * 113.61349 * 270.92676 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7278 2.0815 1.2880 5 9 0.4114 2.5549 1.2679 6 9 1.9029 1.2368 2.3893 7 9 2.6107 3.1625 1.3842 8 6 1.7211 2.1085 -1.2792 9 6 2.9982 1.4840 -1.8657 10 1 3.5938 2.1808 -2.4556 11 6 2.7567 0.1541 -2.5826 12 16 4.3103 -0.4285 -3.3157 13 8 5.2313 -0.8025 -2.3003 14 8 4.7046 0.4179 -4.3868 15 8 3.9425 -1.7422 -3.9905 16 6 3.2492 -1.5930 -5.1499 17 6 3.9267 -1.4902 -6.3569 18 35 5.8162 -1.5564 -6.3902 19 6 3.2187 -1.3390 -7.5346 20 6 3.9533 -1.2279 -8.8458 21 8 4.5382 0.0713 -8.9554 22 14 2.7589 -1.4918 -10.2510 23 6 1.8376 -1.2847 -7.5098 24 6 1.1604 -1.3925 -6.3089 25 6 1.8630 -1.5437 -5.1291 26 6 3.4927 1.3228 -0.4185 27 1 -0.3634 -1.0266 0.0446 28 1 -0.3634 0.5521 0.8668 29 1 -0.3633 0.4747 -0.9115 30 1 1.7865 3.1878 -1.1412 31 1 0.8098 1.8018 -1.7922 32 1 2.0144 0.2945 -3.3684 33 1 2.3934 -0.5836 -1.8671 34 1 4.7372 -1.9840 -8.8883 35 1 5.0278 0.2142 -9.7770 36 1 2.1676 -2.8514 -10.1664 37 1 1.6852 -0.4671 -10.2041 38 1 1.2864 -1.1616 -8.4303 39 1 0.0812 -1.3544 -6.2929 40 1 1.3335 -1.6231 -4.1912 41 1 4.0104 0.3810 -0.2363 42 1 4.0415 2.1876 -0.0458 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10910594_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:00:43 Heat of formation + Delta-G solvation = -239.701543 kcal Electronic energy + Delta-G solvation = -37870.767382 eV Core-core repulsion = 32158.532364 eV Total energy + Delta-G solvation = -5712.235018 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.993 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.22217 -48.77033 -48.64763 -42.47780 -41.62129 -39.98424 -38.27638 -37.60356 -37.51406 -37.13897 -33.88552 -32.62518 -31.89253 -30.48768 -28.60654 -27.97508 -27.13714 -27.02555 -24.94163 -23.85005 -23.09506 -21.63550 -20.84181 -20.02210 -19.55234 -19.45056 -19.22534 -18.88122 -18.66062 -18.47032 -17.87151 -17.49265 -17.21001 -16.67208 -16.52758 -15.96486 -15.88984 -15.74059 -15.57324 -15.51072 -15.41931 -15.13828 -15.00918 -14.92333 -14.85202 -14.75677 -14.68435 -14.45080 -14.41865 -14.20442 -13.74520 -13.61479 -13.49447 -13.36170 -13.23214 -13.15083 -13.09124 -12.87568 -12.55821 -12.42195 -12.38517 -12.25081 -12.10408 -11.92457 -11.58516 -11.26135 -10.97310 -10.46172 -10.38305 -10.00565 -5.14515 -1.24070 -0.43732 -0.36534 0.36840 0.87066 1.08164 1.47522 1.48076 1.74391 1.88832 1.90342 2.38557 2.46879 2.54163 2.71527 2.75951 2.90634 2.97961 3.12833 3.26334 3.33370 3.40095 3.42208 3.44404 3.67404 3.75522 3.76288 3.95568 3.96588 4.00151 4.08167 4.18817 4.21579 4.26127 4.32726 4.40206 4.43758 4.46648 4.51642 4.61006 4.68357 4.72235 4.79729 5.18665 5.51067 6.53115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.333 6.333 3 C 0.041 3.959 4 C 0.438 3.562 5 F -0.181 7.181 6 F -0.172 7.172 7 F -0.173 7.173 8 C -0.136 4.136 9 C -0.091 4.091 10 H 0.112 0.888 11 C -0.646 4.646 12 S 2.582 3.418 13 O -0.911 6.911 14 O -0.930 6.930 15 O -0.656 6.656 16 C 0.093 3.907 17 C -0.046 4.046 18 Br 0.003 6.997 19 C -0.030 4.030 20 C -0.085 4.085 21 O -0.531 6.531 22 Si 0.694 3.306 23 C -0.101 4.101 24 C -0.081 4.081 25 C -0.121 4.121 26 C -0.128 4.128 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.385 0.615 36 H -0.250 1.250 37 H -0.245 1.245 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.110 0.890 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 -0.127 -6.526 8.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.250 6.250 3 C -0.001 4.001 4 C 0.383 3.617 5 F -0.162 7.162 6 F -0.154 7.154 7 F -0.155 7.155 8 C -0.174 4.174 9 C -0.111 4.111 10 H 0.130 0.870 11 C -0.771 4.771 12 S 2.677 3.323 13 O -0.909 6.909 14 O -0.928 6.928 15 O -0.614 6.614 16 C 0.049 3.951 17 C -0.129 4.129 18 Br 0.090 6.910 19 C -0.033 4.033 20 C -0.196 4.196 21 O -0.338 6.338 22 Si 0.594 3.406 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.142 4.142 26 C -0.165 4.165 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.234 0.766 36 H -0.175 1.175 37 H -0.170 1.170 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.128 0.872 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.903 -0.650 -6.210 7.939 hybrid contribution -1.201 0.281 1.423 1.883 sum -6.104 -0.369 -4.787 7.766 Atomic orbital electron populations 1.23179 0.79418 1.04508 1.01699 1.88049 1.21200 1.21941 1.93843 1.23993 0.99625 0.86394 0.90098 1.21115 0.74335 0.78744 0.87490 1.93187 1.36918 1.89297 1.96828 1.93229 1.94942 1.70569 1.56610 1.93189 1.68760 1.56964 1.96556 1.23579 0.99224 1.01082 0.93560 1.21703 0.99352 0.94140 0.95897 0.87014 1.30886 1.24600 1.08159 1.13502 1.06042 0.77030 0.73708 0.75564 1.93671 1.57683 1.80034 1.59489 1.93747 1.80181 1.67824 1.51039 1.85787 1.75045 1.59212 1.41353 1.17676 0.89859 1.06223 0.81341 1.22018 0.93387 1.03729 0.93774 1.96833 0.98828 1.96496 1.98870 1.19264 0.93171 0.97970 0.92847 1.24831 1.04258 0.89988 1.00502 1.86553 1.73071 1.29033 1.45102 0.94694 0.79704 0.80681 0.85491 1.21301 0.93013 0.98385 0.99301 1.21134 1.01167 0.97010 0.90609 1.21427 0.90771 1.00796 1.01183 1.23564 0.91650 1.07071 0.94178 0.87883 0.92535 0.92626 0.86773 0.88396 0.84125 0.82640 0.89812 0.76644 1.17459 1.16999 0.84037 0.82999 0.82853 0.87167 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.43 101.05 1.05 1.04 16 2 O -0.33 0.06 8.34 -35.23 -0.29 -0.24 16 3 C 0.04 -0.02 0.85 -89.66 -0.08 -0.09 16 4 C 0.44 0.47 2.51 37.16 0.09 0.56 16 5 F -0.18 -0.19 15.24 2.25 0.03 -0.16 16 6 F -0.17 -0.49 17.09 2.25 0.04 -0.45 16 7 F -0.17 -0.20 15.82 2.25 0.04 -0.17 16 8 C -0.14 0.34 6.52 -25.91 -0.17 0.17 16 9 C -0.09 0.15 3.83 -89.81 -0.34 -0.20 16 10 H 0.11 -0.30 8.14 -51.93 -0.42 -0.73 16 11 C -0.65 1.04 5.06 37.16 0.19 1.23 16 12 S 2.58 6.64 5.09 -107.50 -0.55 6.09 16 13 O -0.91 -5.05 17.90 -67.04 -1.20 -6.25 16 14 O -0.93 -4.19 14.93 -67.03 -1.00 -5.19 16 15 O -0.66 -1.79 9.41 -51.79 -0.49 -2.27 16 16 C 0.09 0.18 4.79 -39.20 -0.19 0.00 16 17 C -0.05 -0.15 5.58 -39.38 -0.22 -0.37 16 18 Br 0.00 0.01 29.91 -68.01 -2.03 -2.02 16 19 C -0.03 -0.04 5.29 -104.62 -0.55 -0.60 16 20 C -0.09 0.05 2.01 36.01 0.07 0.13 16 21 O -0.53 0.14 12.67 -35.23 -0.45 -0.31 16 22 Si 0.69 -1.93 30.21 -169.99 -5.13 -7.07 16 23 C -0.10 0.05 8.66 -39.56 -0.34 -0.29 16 24 C -0.08 0.19 10.04 -39.60 -0.40 -0.21 16 25 C -0.12 0.19 8.46 -39.44 -0.33 -0.15 16 26 C -0.13 0.08 6.92 -25.78 -0.18 -0.10 16 27 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 28 H 0.06 -0.08 6.25 -51.93 -0.32 -0.41 16 29 H 0.06 -0.22 6.76 -51.93 -0.35 -0.57 16 30 H 0.11 -0.39 8.06 -51.93 -0.42 -0.81 16 31 H 0.10 -0.38 6.70 -51.94 -0.35 -0.73 16 32 H 0.14 -0.59 6.60 -51.92 -0.34 -0.94 16 33 H 0.16 -0.36 6.09 -51.92 -0.32 -0.68 16 34 H 0.08 -0.12 7.22 -51.93 -0.38 -0.50 16 35 H 0.39 -2.03 8.74 45.56 0.40 -1.63 16 36 H -0.25 0.14 7.11 56.52 0.40 0.54 16 37 H -0.25 0.18 6.74 56.52 0.38 0.56 16 38 H 0.14 -0.26 4.89 -52.49 -0.26 -0.52 16 39 H 0.15 -0.86 8.06 -52.49 -0.42 -1.29 16 40 H 0.15 -0.76 7.50 -52.49 -0.39 -1.15 16 41 H 0.11 0.02 7.91 -51.93 -0.41 -0.39 16 42 H 0.13 -0.25 7.01 -51.93 -0.36 -0.61 16 LS Contribution 379.49 15.07 5.72 5.72 Total: 0.00 -11.12 379.49 -10.70 -21.83 By element: Atomic # 1 Polarization: -6.65 SS G_CDS: -3.99 Total: -10.63 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.39 Total: 1.12 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -3.43 Total: -14.25 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.11 Total: -0.78 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: -5.13 Total: -7.07 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -0.55 Total: 6.09 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.03 Total: -2.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -11.12 -10.70 -21.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.875 kcal (2) G-P(sol) polarization free energy of solvation -11.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds