Wall clock time and date at job start Mon Mar 8 2021 10:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00353 * 2 1 4 4 C 1.53003 * 112.84805 * 65.98713 * 3 2 1 5 5 F 1.39900 * 109.46807 * 283.51321 * 4 3 2 6 6 F 1.39899 * 109.47129 * 43.51505 * 4 3 2 7 7 F 1.39907 * 109.46909 * 163.51716 * 4 3 2 8 8 C 1.53783 * 113.61575 * 294.79164 * 3 2 1 9 9 C 1.53787 * 87.07778 * 270.79729 * 8 3 2 10 10 H 1.09006 * 113.61349 * 219.93401 * 9 8 3 11 11 C 1.52996 * 113.61427 * 89.11909 * 9 8 3 12 12 S 1.81399 * 109.47247 * 176.52554 * 11 9 8 13 13 O 1.42102 * 110.54180 * 68.37447 * 12 11 9 14 14 O 1.42099 * 110.54495 * 291.62440 * 12 11 9 15 15 O 1.52198 * 104.44860 * 179.97438 * 12 11 9 16 16 C 1.35913 * 113.99965 * 75.00530 * 15 12 11 17 17 C 1.38792 * 120.06365 * 89.99398 * 16 15 12 18 18 Br 1.89098 * 120.03169 * 359.95960 * 17 16 15 19 19 C 1.38241 * 119.92874 * 179.97438 * 17 16 15 20 20 C 1.50705 * 119.97414 * 180.02562 * 19 17 16 21 21 O 1.42894 * 109.47266 * 285.00478 * 20 19 17 22 22 Si 1.86301 * 109.46971 * 165.00042 * 20 19 17 23 23 C 1.38236 * 120.04737 * 0.27430 * 19 17 16 24 24 C 1.38288 * 120.11660 * 359.45713 * 23 19 17 25 25 C 1.38148 * 120.06951 * 0.53907 * 24 23 19 26 26 C 1.53779 * 87.17525 * 334.52530 * 9 8 3 27 27 H 1.08994 * 109.47622 * 182.48857 * 1 2 3 28 28 H 1.09002 * 109.47198 * 302.49715 * 1 2 3 29 29 H 1.09004 * 109.47061 * 62.49155 * 1 2 3 30 30 H 1.09004 * 113.61274 * 156.25315 * 8 3 2 31 31 H 1.08989 * 113.69070 * 25.35647 * 8 3 2 32 32 H 1.09002 * 109.47274 * 56.52732 * 11 9 8 33 33 H 1.09003 * 109.46910 * 296.52618 * 11 9 8 34 34 H 1.09001 * 109.47006 * 45.00335 * 20 19 17 35 35 H 0.96701 * 114.00232 * 180.02562 * 21 20 19 36 36 H 1.48499 * 110.00095 * 298.68340 * 22 20 19 37 37 H 1.48503 * 109.99700 * 60.00285 * 22 20 19 38 38 H 1.08002 * 119.94376 * 179.69783 * 23 19 17 39 39 H 1.07998 * 119.96606 * 180.29203 * 24 23 19 40 40 H 1.08001 * 120.02241 * 179.70478 * 25 24 23 41 41 H 1.08998 * 113.61649 * 140.02178 * 26 9 8 42 42 H 1.08998 * 113.61349 * 270.92676 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7278 2.0815 1.2880 5 9 0.4114 2.5549 1.2679 6 9 1.9029 1.2368 2.3893 7 9 2.6107 3.1625 1.3842 8 6 1.7211 2.1085 -1.2792 9 6 2.9982 1.4840 -1.8657 10 1 3.5938 2.1808 -2.4556 11 6 2.7567 0.1541 -2.5826 12 16 4.3103 -0.4285 -3.3157 13 8 5.2313 -0.8025 -2.3003 14 8 4.7046 0.4179 -4.3868 15 8 3.9425 -1.7422 -3.9905 16 6 3.2492 -1.5930 -5.1499 17 6 3.9267 -1.4902 -6.3569 18 35 5.8162 -1.5564 -6.3902 19 6 3.2187 -1.3390 -7.5346 20 6 3.9533 -1.2279 -8.8458 21 8 4.5382 0.0713 -8.9554 22 14 2.7589 -1.4918 -10.2510 23 6 1.8376 -1.2847 -7.5098 24 6 1.1604 -1.3925 -6.3089 25 6 1.8630 -1.5437 -5.1291 26 6 3.4927 1.3228 -0.4185 27 1 -0.3634 -1.0266 0.0446 28 1 -0.3634 0.5521 0.8668 29 1 -0.3633 0.4747 -0.9115 30 1 1.7865 3.1878 -1.1412 31 1 0.8098 1.8018 -1.7922 32 1 2.0144 0.2945 -3.3684 33 1 2.3934 -0.5836 -1.8671 34 1 4.7372 -1.9840 -8.8883 35 1 5.0278 0.2142 -9.7770 36 1 2.1676 -2.8514 -10.1664 37 1 1.6852 -0.4671 -10.2041 38 1 1.2864 -1.1616 -8.4303 39 1 0.0812 -1.3544 -6.2929 40 1 1.3335 -1.6231 -4.1912 41 1 4.0104 0.3810 -0.2363 42 1 4.0415 2.1876 -0.0458 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10910594_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:00:42 Heat of formation + Delta-G solvation = -242.195787 kcal Electronic energy + Delta-G solvation = -37870.875541 eV Core-core repulsion = 32158.532364 eV Total energy + Delta-G solvation = -5712.343177 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.993 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -51.29212 -48.82537 -48.76038 -42.49940 -41.49277 -39.94751 -38.49506 -37.50474 -37.43952 -37.28900 -33.86170 -32.59028 -31.82008 -30.51770 -28.42140 -27.92615 -27.03955 -26.84839 -24.95320 -23.79461 -23.00129 -21.66947 -20.76443 -20.01698 -19.61058 -19.51208 -19.26543 -18.91892 -18.66139 -18.40222 -17.80374 -17.39789 -17.18597 -16.55768 -16.51141 -15.90513 -15.81409 -15.70680 -15.64086 -15.43469 -15.39930 -15.19239 -14.96309 -14.93449 -14.89967 -14.76463 -14.65130 -14.42026 -14.34989 -14.19622 -13.79635 -13.61141 -13.50580 -13.32284 -13.29137 -13.20257 -12.97147 -12.81960 -12.39866 -12.31313 -12.22740 -12.19375 -12.05692 -11.93033 -11.49231 -11.42721 -10.85555 -10.37716 -10.28542 -10.04089 -4.91012 -1.30739 -0.36146 -0.34999 0.27859 0.82039 1.25291 1.48492 1.68392 1.90512 2.00351 2.03370 2.35014 2.50391 2.56645 2.72670 2.79406 3.03526 3.08752 3.20501 3.26636 3.43351 3.46621 3.52844 3.58156 3.84837 3.89446 3.94588 4.05543 4.16122 4.27250 4.30748 4.33343 4.39275 4.43505 4.50305 4.53387 4.62980 4.63366 4.70889 4.81306 4.83052 4.85162 4.92113 5.33615 5.68138 6.87266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.346 6.346 3 C 0.039 3.961 4 C 0.432 3.568 5 F -0.181 7.181 6 F -0.188 7.188 7 F -0.177 7.177 8 C -0.124 4.124 9 C -0.098 4.098 10 H 0.122 0.878 11 C -0.619 4.619 12 S 2.573 3.427 13 O -0.958 6.958 14 O -0.959 6.959 15 O -0.665 6.665 16 C 0.068 3.932 17 C -0.077 4.077 18 Br -0.029 7.029 19 C -0.051 4.051 20 C -0.107 4.107 21 O -0.552 6.552 22 Si 0.788 3.212 23 C -0.111 4.111 24 C -0.066 4.066 25 C -0.114 4.114 26 C -0.142 4.142 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.177 0.823 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.403 0.597 36 H -0.279 1.279 37 H -0.267 1.267 38 H 0.154 0.846 39 H 0.196 0.804 40 H 0.193 0.807 41 H 0.095 0.905 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 0.372 -7.425 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.264 6.264 3 C -0.003 4.003 4 C 0.378 3.622 5 F -0.162 7.162 6 F -0.169 7.169 7 F -0.158 7.158 8 C -0.162 4.162 9 C -0.118 4.118 10 H 0.140 0.860 11 C -0.749 4.749 12 S 2.673 3.327 13 O -0.956 6.956 14 O -0.957 6.957 15 O -0.624 6.624 16 C 0.025 3.975 17 C -0.159 4.159 18 Br 0.058 6.942 19 C -0.053 4.053 20 C -0.215 4.215 21 O -0.362 6.362 22 Si 0.689 3.311 23 C -0.130 4.130 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.179 4.179 27 H 0.134 0.866 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.194 0.806 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.254 0.746 36 H -0.206 1.206 37 H -0.194 1.194 38 H 0.171 0.829 39 H 0.213 0.787 40 H 0.210 0.790 41 H 0.114 0.886 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.101 -0.158 -7.128 10.791 hybrid contribution -0.284 0.130 1.750 1.778 sum -8.384 -0.028 -5.378 9.961 Atomic orbital electron populations 1.23389 0.78335 1.05531 1.02378 1.88039 1.22441 1.22035 1.93852 1.24098 0.99607 0.86675 0.89950 1.21485 0.74246 0.78706 0.87776 1.93182 1.36903 1.89313 1.96825 1.93193 1.95038 1.71062 1.57632 1.93177 1.68884 1.57155 1.96595 1.23638 0.99394 1.01445 0.91707 1.21819 1.00319 0.94315 0.95306 0.86018 1.30674 1.21553 1.08350 1.14349 1.06068 0.78437 0.73334 0.74860 1.93607 1.60825 1.80797 1.60368 1.93705 1.81743 1.68275 1.51997 1.85748 1.75697 1.59075 1.41843 1.18146 0.91282 1.07526 0.80569 1.22226 0.92075 1.06320 0.95315 1.96762 1.01747 1.96778 1.98940 1.19665 0.94359 0.98226 0.93084 1.25257 1.05242 0.89722 1.01246 1.86500 1.73602 1.29317 1.46790 0.93519 0.76854 0.77402 0.83298 1.21619 0.92280 0.98183 1.00897 1.21685 1.03118 0.94284 0.89293 1.21927 0.89124 0.99096 1.03315 1.23704 0.91979 1.06776 0.95418 0.86622 0.93724 0.90243 0.85615 0.86048 0.80572 0.81418 0.90061 0.74601 1.20574 1.19351 0.82850 0.78686 0.78969 0.88612 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.43 113.37 1.18 1.19 16 2 O -0.35 0.56 8.34 -148.98 -1.24 -0.68 16 3 C 0.04 -0.07 0.85 -10.17 -0.01 -0.08 16 4 C 0.43 0.85 2.51 71.98 0.18 1.03 16 5 F -0.18 -0.26 15.24 44.97 0.69 0.43 16 6 F -0.19 -1.20 17.09 44.97 0.77 -0.44 16 7 F -0.18 -0.43 15.82 44.97 0.71 0.28 16 8 C -0.12 0.92 6.52 31.12 0.20 1.12 16 9 C -0.10 0.44 3.83 -10.27 -0.04 0.40 16 10 H 0.12 -0.76 8.14 -2.38 -0.02 -0.78 16 11 C -0.62 2.99 5.06 71.98 0.36 3.36 16 12 S 2.57 16.17 5.09 -56.49 -0.29 15.89 16 13 O -0.96 -13.22 17.90 -118.57 -2.12 -15.34 16 14 O -0.96 -10.34 14.93 -118.57 -1.77 -12.11 16 15 O -0.66 -4.34 9.41 -61.66 -0.58 -4.92 16 16 C 0.07 0.27 4.79 22.52 0.11 0.38 16 17 C -0.08 -0.58 5.58 22.40 0.12 -0.46 16 18 Br -0.03 -0.32 29.91 -20.37 -0.61 -0.92 16 19 C -0.05 -0.17 5.29 -19.86 -0.11 -0.27 16 20 C -0.11 0.05 2.01 71.24 0.14 0.19 16 21 O -0.55 -0.29 12.67 -148.98 -1.89 -2.18 16 22 Si 0.79 -4.75 30.21 68.60 2.07 -2.68 16 23 C -0.11 0.27 8.66 22.28 0.19 0.46 16 24 C -0.07 0.52 10.04 22.26 0.22 0.74 16 25 C -0.11 0.64 8.46 22.36 0.19 0.83 16 26 C -0.14 0.14 6.92 31.21 0.22 0.35 16 27 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H 0.04 -0.17 6.25 -2.39 -0.01 -0.19 16 29 H 0.08 -0.91 6.76 -2.38 -0.02 -0.93 16 30 H 0.13 -1.17 8.06 -2.39 -0.02 -1.19 16 31 H 0.12 -1.46 6.70 -2.39 -0.02 -1.47 16 32 H 0.18 -2.14 6.60 -2.39 -0.02 -2.16 16 33 H 0.17 -1.10 6.09 -2.39 -0.01 -1.11 16 34 H 0.08 -0.09 7.22 -2.39 -0.02 -0.10 16 35 H 0.40 -3.88 8.74 -74.06 -0.65 -4.53 16 36 H -0.28 0.39 7.11 99.48 0.71 1.10 16 37 H -0.27 0.68 6.74 99.48 0.67 1.35 16 38 H 0.15 -0.83 4.89 -2.91 -0.01 -0.84 16 39 H 0.20 -3.25 8.06 -2.91 -0.02 -3.28 16 40 H 0.19 -2.75 7.50 -2.91 -0.02 -2.77 16 41 H 0.10 0.18 7.91 -2.39 -0.02 0.16 16 42 H 0.13 -0.43 7.01 -2.39 -0.02 -0.45 16 Total: 0.00 -30.93 379.49 -0.81 -31.73 By element: Atomic # 1 Polarization: -18.78 SS G_CDS: 0.48 Total: -18.29 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 2.97 Total: 9.24 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -7.60 Total: -35.24 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 2.17 Total: 0.27 kcal Atomic # 14 Polarization: -4.75 SS G_CDS: 2.07 Total: -2.68 kcal Atomic # 16 Polarization: 16.17 SS G_CDS: -0.29 Total: 15.89 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.61 Total: -0.92 kcal Total: -30.93 -0.81 -31.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.461 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds