Wall clock time and date at job start Mon Mar 8 2021 09:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 H 1.48503 * 109.47274 * 59.99882 * 3 2 1 5 5 H 1.48506 * 109.47357 * 179.97438 * 3 2 1 6 6 H 1.48503 * 109.47244 * 299.99766 * 3 2 1 7 7 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 8 8 C 1.38193 * 119.97943 * 75.27460 * 7 2 1 9 9 Br 1.89104 * 120.03340 * 0.02562 * 8 7 2 10 10 C 1.38826 * 119.93050 * 179.97438 * 8 7 2 11 11 O 1.35919 * 120.05961 * 180.02562 * 10 8 7 12 12 S 1.52202 * 114.00253 * 89.99906 * 11 10 8 13 13 O 1.42105 * 106.40096 * 188.54070 * 12 11 10 14 14 O 1.42103 * 106.40053 * 321.46081 * 12 11 10 15 15 C 1.76196 * 107.21669 * 74.99821 * 12 11 10 16 16 C 1.38235 * 120.00523 * 270.27415 * 15 12 11 17 17 C 1.38231 * 120.00374 * 180.02562 * 16 15 12 18 18 C 1.38232 * 119.99795 * 359.97438 * 17 16 15 19 Xx 1.81010 * 119.99775 * 179.97438 * 18 17 16 20 19 F 9.74750 * 147.88775 * 54.95206 * 8 1 2 21 20 F 1.60995 * 89.99664 * 135.00445 * 19 18 17 22 21 F 1.60998 * 89.99733 * 315.00363 * 19 18 17 23 22 F 1.61000 * 89.99916 * 225.00238 * 19 18 17 24 23 F 1.60993 * 89.99667 * 45.00407 * 19 18 17 25 24 C 1.38235 * 120.00160 * 359.96141 * 18 17 16 26 25 C 1.38230 * 120.00294 * 359.85573 * 25 18 17 27 26 C 1.38676 * 119.88409 * 359.97438 * 10 8 7 28 27 C 1.38184 * 119.95371 * 0.02562 * 27 10 8 29 28 C 1.38245 * 120.06908 * 359.72426 * 28 27 10 30 29 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 31 30 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 32 31 H 1.08007 * 119.99330 * 359.97438 * 16 15 12 33 32 H 1.08001 * 119.99772 * 179.97438 * 17 16 15 34 33 H 1.08006 * 119.99849 * 180.02562 * 25 18 17 35 34 H 1.08000 * 120.00600 * 180.02562 * 26 25 18 36 35 H 1.08000 * 120.02339 * 179.97438 * 27 10 8 37 36 H 1.08002 * 119.96853 * 179.97438 * 28 27 10 38 37 H 1.08002 * 119.93769 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 1.2125 5 1 3.5350 1.7565 0.0006 6 1 1.5550 2.4565 -1.2125 7 6 1.9313 -0.7104 1.2305 8 6 1.8746 -2.0892 1.3033 9 35 1.1678 -3.0850 -0.1405 10 6 2.3381 -2.7426 2.4372 11 8 2.2841 -4.0987 2.5114 12 16 3.5272 -4.7978 1.9800 13 8 3.2232 -6.1856 1.9455 14 8 3.9419 -4.0643 0.8358 15 6 4.7951 -4.5960 3.1868 16 6 5.6331 -3.4980 3.1321 17 6 6.6281 -3.3400 4.0785 18 6 6.7848 -4.2798 5.0800 19 9 9.2433 -3.8882 7.4254 20 9 7.0436 -4.4582 7.4820 21 9 9.1327 -3.6883 5.1559 22 9 8.4844 -5.6257 6.1610 23 9 7.6919 -2.5208 6.4769 24 6 5.9460 -5.3772 5.1356 25 6 4.9485 -5.5332 4.1914 26 6 2.8574 -2.0093 3.4935 27 6 2.9118 -0.6307 3.4155 28 6 2.4544 0.0176 2.2834 29 1 -0.3933 0.4417 -0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 5.5108 -2.7640 2.3492 32 1 7.2830 -2.4823 4.0354 33 1 6.0682 -6.1112 5.9184 34 1 4.2929 -6.3904 4.2350 35 1 3.2182 -2.5153 4.3768 36 1 3.3157 -0.0594 4.2382 37 1 2.4984 1.0952 2.2246 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10910594_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:20 Heat of formation + Delta-G solvation = 319.112102 kcal Electronic energy + Delta-G solvation = -37150.916876 eV Core-core repulsion = 31011.881435 eV Total energy + Delta-G solvation = -6139.035441 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 465.951 amu Computer time = 37.67 seconds Orbital eigenvalues (eV) -44.44145 -44.32279 -44.20563 -44.13378 -43.67874 -42.55423 -41.33017 -39.93732 -38.80843 -37.49906 -37.43268 -33.83626 -33.25736 -33.06914 -32.48671 -30.46487 -27.06507 -25.01612 -24.85077 -24.72331 -23.04813 -21.70481 -20.48395 -19.26635 -18.92763 -18.48942 -18.03986 -17.76148 -17.43641 -16.71719 -16.55724 -16.23681 -15.79080 -15.73948 -15.56252 -15.52326 -15.19574 -14.95644 -14.82804 -14.81285 -14.67782 -14.53869 -14.46389 -14.32295 -14.23299 -14.21122 -14.06113 -13.96643 -13.88221 -13.75931 -13.65424 -13.62401 -13.54529 -13.50671 -13.20608 -12.88383 -12.75633 -12.34460 -12.23793 -12.15017 -11.95013 -11.94503 -11.73263 -11.68720 -11.45010 -11.40673 -11.11048 -10.34602 -10.24437 -9.98037 -5.32296 -4.86398 -3.49107 -1.63730 -1.32954 -0.79073 -0.30144 -0.25643 0.32003 0.83033 1.13920 1.35661 1.50312 1.58036 1.94447 2.05682 2.14466 2.35865 2.51507 2.64497 3.06852 3.15682 3.20424 3.51040 3.63493 3.66486 3.68545 3.86491 3.92598 3.95509 3.99017 4.13155 4.17944 4.32103 4.40141 4.59405 4.61501 4.71345 4.94718 5.04649 5.42171 6.78703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.106 4.106 3 Si 0.980 3.020 4 H -0.246 1.246 5 H -0.243 1.243 6 H -0.260 1.260 7 C -0.045 4.045 8 C -0.070 4.070 9 Br -0.029 7.029 10 C 0.061 3.939 11 O -0.645 6.645 12 S 2.679 3.321 13 O -0.931 6.931 14 O -0.934 6.934 15 C -0.697 4.697 16 C 0.056 3.944 17 C -0.120 4.120 18 C 0.394 3.606 19 F -0.199 7.199 20 F -0.161 7.161 21 F -0.165 7.165 22 F -0.171 7.171 23 F -0.152 7.152 24 C -0.126 4.126 25 C 0.060 3.940 26 C -0.109 4.109 27 C -0.065 4.065 28 C -0.097 4.097 29 H 0.400 0.600 30 H 0.089 0.911 31 H 0.224 0.776 32 H 0.214 0.786 33 H 0.207 0.793 34 H 0.222 0.778 35 H 0.183 0.817 36 H 0.192 0.808 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 6.101 -5.095 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.215 4.215 3 Si 0.801 3.199 4 H -0.170 1.170 5 H -0.166 1.166 6 H -0.184 1.184 7 C -0.047 4.047 8 C -0.153 4.153 9 Br 0.057 6.943 10 C 0.017 3.983 11 O -0.604 6.604 12 S 2.770 3.230 13 O -0.929 6.929 14 O -0.933 6.933 15 C -0.779 4.779 16 C 0.038 3.962 17 C -0.138 4.138 18 C 0.388 3.612 19 F -0.199 7.199 20 F -0.159 7.159 21 F -0.163 7.163 22 F -0.169 7.169 23 F -0.151 7.151 24 C -0.144 4.144 25 C 0.042 3.958 26 C -0.130 4.130 27 C -0.083 4.083 28 C -0.116 4.116 29 H 0.250 0.750 30 H 0.106 0.894 31 H 0.240 0.760 32 H 0.230 0.770 33 H 0.224 0.776 34 H 0.238 0.762 35 H 0.200 0.800 36 H 0.209 0.791 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.121 5.873 -5.605 10.799 hybrid contribution 1.336 -0.333 1.205 1.830 sum -5.785 5.540 -4.400 9.139 Atomic orbital electron populations 1.86468 1.16285 1.82485 1.50879 1.25097 0.86882 1.12225 0.97261 0.85265 0.80597 0.72877 0.81192 1.17007 1.16575 1.18407 1.19464 0.97886 0.90283 0.97044 1.22144 1.03418 0.95580 0.94125 1.96828 1.83991 1.71237 1.42206 1.18002 1.07470 0.76344 0.96439 1.85801 1.60734 1.26368 1.87498 1.02789 0.72581 0.74129 0.73529 1.93679 1.82604 1.30869 1.85768 1.93714 1.81846 1.71582 1.46148 1.31874 1.21688 1.05050 1.19271 1.21686 0.85702 0.95318 0.93518 1.22309 1.00444 1.02005 0.89035 1.28049 0.65762 0.98495 0.68861 2.00000 1.61398 1.80018 1.78478 1.99919 1.40774 1.95976 1.79260 1.99923 1.76637 1.92722 1.47037 1.99923 1.88703 1.56775 1.71542 1.99919 1.59432 1.61451 1.94275 1.22306 0.91440 0.97459 1.03168 1.21626 0.91279 0.97632 0.85241 1.21853 0.98584 0.95525 0.97009 1.21666 0.95592 0.92681 0.98363 1.21777 0.95611 1.02051 0.92192 0.74975 0.89358 0.75963 0.76972 0.77589 0.76185 0.79971 0.79069 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 684. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.59 12.69 -148.98 -1.89 0.70 16 2 C -0.11 0.64 2.01 71.24 0.14 0.78 16 3 Si 0.98 -8.46 25.49 68.60 1.75 -6.71 16 4 H -0.25 2.04 6.73 99.48 0.67 2.71 16 5 H -0.24 2.11 7.11 99.48 0.71 2.82 16 6 H -0.26 1.73 7.11 99.48 0.71 2.44 16 7 C -0.04 0.22 5.29 -19.86 -0.11 0.11 16 8 C -0.07 0.11 5.62 22.40 0.13 0.24 16 9 Br -0.03 -0.07 30.15 -20.37 -0.61 -0.69 16 10 C 0.06 -0.34 4.79 22.52 0.11 -0.23 16 11 O -0.64 2.84 9.51 -61.92 -0.59 2.25 16 12 S 2.68 -13.04 5.30 -56.49 -0.30 -13.34 16 13 O -0.93 -0.96 17.27 -118.78 -2.05 -3.01 16 14 O -0.93 2.03 14.52 -118.78 -1.72 0.30 16 15 C -0.70 8.70 5.28 22.27 0.12 8.82 16 16 C 0.06 -0.87 8.40 22.27 0.19 -0.68 16 17 C -0.12 1.48 8.62 22.27 0.19 1.67 16 18 C 0.39 -2.07 4.82 22.27 0.11 -1.96 16 19 F -0.20 -4.34 16.66 44.97 0.75 -3.59 16 20 F -0.16 -1.66 15.30 44.97 0.69 -0.97 16 21 F -0.16 -1.81 15.32 44.97 0.69 -1.12 16 22 F -0.17 -2.05 15.32 44.97 0.69 -1.36 16 23 F -0.15 -1.35 15.30 44.97 0.69 -0.66 16 24 C -0.13 1.34 8.62 22.27 0.19 1.53 16 25 C 0.06 -0.85 9.52 22.27 0.21 -0.64 16 26 C -0.11 1.43 8.36 22.36 0.19 1.62 16 27 C -0.07 0.98 10.04 22.26 0.22 1.20 16 28 C -0.10 1.02 8.65 22.28 0.19 1.22 16 29 H 0.40 -5.02 8.74 -74.06 -0.65 -5.67 16 30 H 0.09 -0.59 7.21 -2.39 -0.02 -0.61 16 31 H 0.22 -4.73 7.62 -2.91 -0.02 -4.75 16 32 H 0.21 -3.16 7.40 -2.91 -0.02 -3.18 16 33 H 0.21 -2.47 7.40 -2.91 -0.02 -2.49 16 34 H 0.22 -4.17 7.62 -2.91 -0.02 -4.19 16 35 H 0.18 -3.63 7.94 -2.91 -0.02 -3.65 16 36 H 0.19 -4.23 8.06 -2.91 -0.02 -4.25 16 37 H 0.16 -2.25 4.88 -2.91 -0.01 -2.26 16 Total: 0.00 -38.84 370.69 1.24 -37.61 By element: Atomic # 1 Polarization: -24.36 SS G_CDS: 1.27 Total: -23.08 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 1.88 Total: 13.68 kcal Atomic # 8 Polarization: 6.49 SS G_CDS: -6.26 Total: 0.24 kcal Atomic # 9 Polarization: -11.21 SS G_CDS: 3.50 Total: -7.70 kcal Atomic # 14 Polarization: -8.46 SS G_CDS: 1.75 Total: -6.71 kcal Atomic # 16 Polarization: -13.04 SS G_CDS: -0.30 Total: -13.34 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.61 Total: -0.69 kcal Total: -38.84 1.24 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10910594_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 356.718 kcal (2) G-P(sol) polarization free energy of solvation -38.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 317.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 319.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.67 seconds