Wall clock time and date at job start Mon Mar 8 2021 10:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00294 * 2 1 4 4 O 1.20823 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00408 * 179.97438 * 3 2 1 6 6 H 1.09008 * 112.90384 * 48.74953 * 5 3 2 7 7 C 1.53777 * 113.61917 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08412 * 139.98276 * 7 5 3 9 9 H 1.08999 * 113.61615 * 89.19702 * 8 7 5 10 10 N 1.46501 * 113.61923 * 220.02439 * 8 7 5 11 11 S 1.65600 * 120.00201 * 213.47218 * 10 8 7 12 12 O 1.42103 * 106.39941 * 311.45705 * 11 10 8 13 13 O 1.42099 * 106.40011 * 178.53433 * 11 10 8 14 14 C 1.76202 * 107.21903 * 64.99451 * 11 10 8 15 15 C 1.33384 * 125.20176 * 150.00371 * 14 11 10 16 16 C 1.50699 * 122.54096 * 359.97438 * 15 14 11 17 17 O 1.42901 * 109.46830 * 285.00134 * 16 15 14 18 18 Si 1.86298 * 109.46950 * 165.00571 * 16 15 14 19 19 C 1.38428 * 114.91686 * 180.25171 * 15 14 11 20 20 C 1.33387 * 114.92235 * 359.48705 * 19 15 14 21 21 S 1.75879 * 109.59277 * 0.48193 * 20 19 15 22 22 C 1.53788 * 87.17163 * 334.61184 * 8 7 5 23 23 H 1.08994 * 109.47086 * 300.00026 * 1 2 3 24 24 H 1.09004 * 109.46862 * 59.99689 * 1 2 3 25 25 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 26 26 H 1.09000 * 113.61424 * 25.43559 * 7 5 3 27 27 H 1.09000 * 113.69158 * 254.54197 * 7 5 3 28 28 H 0.97003 * 119.99480 * 33.46423 * 10 8 7 29 29 H 1.08991 * 109.47351 * 45.00281 * 16 15 14 30 30 H 0.96708 * 114.00246 * 299.99864 * 17 16 15 31 31 H 1.48506 * 109.99834 * 180.02562 * 18 16 15 32 32 H 1.48502 * 110.00011 * 301.31529 * 18 16 15 33 33 H 1.08001 * 122.53844 * 179.73140 * 19 15 14 34 34 H 1.08002 * 125.20306 * 180.21511 * 20 19 15 35 35 H 1.09002 * 113.61188 * 139.93563 * 22 8 7 36 36 H 1.08998 * 113.61156 * 270.83968 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0249 0.6357 -0.7540 7 6 4.1078 2.7141 0.0011 8 6 5.1808 2.2265 0.9890 9 1 6.0813 1.8492 0.5044 10 7 5.4695 3.1823 2.0610 11 16 7.0027 3.2987 2.6759 12 8 7.4261 1.9706 2.9521 13 8 6.9634 4.3226 3.6604 14 6 8.0401 3.8926 1.3814 15 6 9.1347 4.6354 1.5528 16 6 9.6196 5.0623 2.9143 17 8 8.7846 6.1105 3.4102 18 14 11.3742 5.6749 2.7845 19 6 9.7880 4.9894 0.3849 20 6 9.2300 4.5251 -0.7342 21 16 7.7911 3.5961 -0.3343 22 6 4.1927 1.1215 1.3986 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.4173 3.4403 0.4300 27 1 4.5114 3.0306 -0.9607 28 1 4.7625 3.7471 2.4105 29 1 9.5807 4.2132 3.5965 30 1 8.7707 6.9000 2.8517 31 1 11.8644 6.0984 4.1208 32 1 12.2471 4.6040 2.2399 33 1 10.6840 5.5923 0.3804 34 1 9.6023 4.6972 -1.7333 35 1 4.6646 0.1527 1.5627 36 1 3.5254 1.4114 2.2102 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10970308_13652106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:19:13 Heat of formation + Delta-G solvation = -112.514321 kcal Electronic energy + Delta-G solvation = -24900.985964 eV Core-core repulsion = 20993.483942 eV Total energy + Delta-G solvation = -3907.502023 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.047 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.89691 -40.12318 -39.86631 -38.06706 -37.38082 -37.01141 -36.75632 -34.37036 -31.51687 -29.34063 -28.03131 -27.00056 -26.72963 -24.38857 -22.73290 -21.85635 -20.80950 -19.96429 -19.74417 -18.93565 -18.40753 -18.05512 -17.91443 -17.43085 -16.86042 -16.66119 -16.39738 -16.08983 -15.89968 -15.64578 -15.18642 -14.72769 -14.46566 -14.25171 -14.10134 -13.95729 -13.75716 -13.74437 -13.58144 -13.11116 -13.01071 -12.93264 -12.70957 -12.60806 -12.40125 -12.24028 -12.16832 -12.04297 -11.80613 -11.78518 -11.37628 -10.74346 -10.49575 -10.46190 -9.75511 -5.14032 -0.79007 -0.62581 0.15474 0.49923 1.12060 1.13598 1.17907 1.58790 1.61908 1.90870 1.94864 2.61890 3.06072 3.14345 3.39372 3.41341 3.43939 3.47143 3.55326 3.78671 3.91100 3.99199 4.01792 4.14477 4.22145 4.25841 4.39554 4.40994 4.51517 4.56873 4.58392 4.67748 4.73939 4.76006 4.95436 5.12407 5.36053 5.75318 6.60236 6.69983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.504 6.504 5 C -0.112 4.112 6 H 0.133 0.867 7 C -0.124 4.124 8 C 0.123 3.877 9 H 0.115 0.885 10 N -1.101 6.101 11 S 2.704 3.296 12 O -0.947 6.947 13 O -0.916 6.916 14 C -0.767 4.767 15 C 0.004 3.996 16 C -0.081 4.081 17 O -0.503 6.503 18 Si 0.699 3.301 19 C -0.158 4.158 20 C -0.160 4.160 21 S 0.197 5.803 22 C -0.130 4.130 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.426 0.574 29 H 0.112 0.888 30 H 0.374 0.626 31 H -0.246 1.246 32 H -0.252 1.252 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.096 0.904 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 0.868 -6.524 6.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.391 6.391 5 C -0.132 4.132 6 H 0.151 0.849 7 C -0.164 4.164 8 C 0.015 3.985 9 H 0.133 0.867 10 N -0.861 5.861 11 S 2.788 3.212 12 O -0.937 6.937 13 O -0.906 6.906 14 C -0.967 4.967 15 C -0.013 4.013 16 C -0.194 4.194 17 O -0.307 6.307 18 Si 0.599 3.401 19 C -0.188 4.188 20 C -0.298 4.298 21 S 0.464 5.536 22 C -0.170 4.170 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.262 0.738 29 H 0.130 0.870 30 H 0.220 0.780 31 H -0.170 1.170 32 H -0.176 1.176 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.115 0.885 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.284 -0.486 -5.917 5.944 hybrid contribution 0.243 0.696 0.052 0.739 sum 0.528 0.210 -5.865 5.892 Atomic orbital electron populations 1.23330 0.75864 1.04057 1.02726 1.86516 1.23765 1.33222 1.83749 1.23415 0.91498 0.81472 0.72141 1.90690 1.66944 1.36422 1.45017 1.22397 0.87979 1.01005 1.01809 0.84887 1.23436 0.97086 0.95127 1.00710 1.22275 0.98264 0.89853 0.88154 0.86714 1.55603 1.28090 1.50994 1.51443 1.01994 0.72252 0.74261 0.72707 1.93652 1.81244 1.36813 1.81955 1.93743 1.85091 1.58044 1.53703 1.35755 1.19975 1.22677 1.18306 1.19176 0.91925 0.92673 0.97559 1.25203 1.07618 0.95081 0.91475 1.86829 1.68375 1.25592 1.49880 0.94921 0.72996 0.87396 0.84826 1.20228 1.02949 1.04793 0.90823 1.26171 0.99055 1.01101 1.03432 1.83975 1.24734 1.50084 0.94846 1.23485 0.97735 1.00839 0.94926 0.91729 0.91719 0.87813 0.87200 0.89073 0.73801 0.87030 0.77994 1.16997 1.17641 0.82423 0.80276 0.88512 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.30 10.56 -39.24 -0.41 -0.72 16 3 C 0.47 0.47 7.49 36.01 0.27 0.74 16 4 O -0.50 -1.89 15.65 -18.75 -0.29 -2.18 16 5 C -0.11 0.23 4.26 -90.87 -0.39 -0.16 16 6 H 0.13 -0.57 8.14 -51.92 -0.42 -0.99 16 7 C -0.12 0.31 7.19 -25.92 -0.19 0.13 16 8 C 0.12 -0.24 3.54 -67.12 -0.24 -0.47 16 9 H 0.12 -0.33 6.46 -51.93 -0.34 -0.66 16 10 N -1.10 1.02 5.79 -4.20 -0.02 0.99 16 11 S 2.70 6.34 5.35 -107.50 -0.58 5.76 16 12 O -0.95 -4.97 17.78 -57.17 -1.02 -5.99 16 13 O -0.92 -4.54 15.11 -65.82 -0.99 -5.54 16 14 C -0.77 -0.77 6.48 29.04 0.19 -0.58 16 15 C 0.00 0.00 5.13 -106.25 -0.54 -0.54 16 16 C -0.08 -0.10 1.87 36.01 0.07 -0.03 16 17 O -0.50 -0.89 11.04 -56.06 -0.62 -1.51 16 18 Si 0.70 -0.70 30.25 -169.99 -5.14 -5.85 16 19 C -0.16 0.29 8.74 -41.21 -0.36 -0.07 16 20 C -0.16 0.41 11.23 29.04 0.33 0.74 16 21 S 0.20 -0.34 20.95 -107.50 -2.25 -2.59 16 22 C -0.13 0.24 7.44 -25.82 -0.19 0.05 16 23 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 24 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 25 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 26 H 0.11 -0.17 7.43 -51.93 -0.39 -0.56 16 27 H 0.09 -0.36 8.14 -51.93 -0.42 -0.79 16 28 H 0.43 -1.07 8.93 -34.47 -0.31 -1.38 16 29 H 0.11 0.28 7.60 -51.93 -0.39 -0.11 16 30 H 0.37 -1.11 8.70 45.56 0.40 -0.72 16 31 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 32 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 33 H 0.16 -0.72 5.74 -52.49 -0.30 -1.03 16 34 H 0.18 -0.97 8.06 -52.49 -0.42 -1.39 16 35 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.10 -0.16 8.10 -51.93 -0.42 -0.58 16 LS Contribution 330.48 15.07 4.98 4.98 Total: 0.00 -12.11 330.48 -10.25 -22.36 By element: Atomic # 1 Polarization: -6.65 SS G_CDS: -3.91 Total: -10.56 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 0.01 Total: 0.83 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -0.02 Total: 0.99 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -3.34 Total: -15.93 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.14 Total: -5.85 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -2.83 Total: 3.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -12.11 -10.25 -22.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10970308_13652106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.157 kcal (2) G-P(sol) polarization free energy of solvation -12.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds