Wall clock time and date at job start Mon Mar 8 2021 10:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00294 * 2 1 4 4 O 1.20823 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00408 * 179.97438 * 3 2 1 6 6 H 1.09008 * 112.90384 * 48.74953 * 5 3 2 7 7 C 1.53777 * 113.61917 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08412 * 139.98276 * 7 5 3 9 9 H 1.08999 * 113.61615 * 89.19702 * 8 7 5 10 10 N 1.46501 * 113.61923 * 220.02439 * 8 7 5 11 11 S 1.65600 * 120.00201 * 213.47218 * 10 8 7 12 12 O 1.42103 * 106.39941 * 311.45705 * 11 10 8 13 13 O 1.42099 * 106.40011 * 178.53433 * 11 10 8 14 14 C 1.76202 * 107.21903 * 64.99451 * 11 10 8 15 15 C 1.33384 * 125.20176 * 150.00371 * 14 11 10 16 16 C 1.50699 * 122.54096 * 359.97438 * 15 14 11 17 17 O 1.42901 * 109.46830 * 285.00134 * 16 15 14 18 18 Si 1.86298 * 109.46950 * 165.00571 * 16 15 14 19 19 C 1.38428 * 114.91686 * 180.25171 * 15 14 11 20 20 C 1.33387 * 114.92235 * 359.48705 * 19 15 14 21 21 S 1.75879 * 109.59277 * 0.48193 * 20 19 15 22 22 C 1.53788 * 87.17163 * 334.61184 * 8 7 5 23 23 H 1.08994 * 109.47086 * 300.00026 * 1 2 3 24 24 H 1.09004 * 109.46862 * 59.99689 * 1 2 3 25 25 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 26 26 H 1.09000 * 113.61424 * 25.43559 * 7 5 3 27 27 H 1.09000 * 113.69158 * 254.54197 * 7 5 3 28 28 H 0.97003 * 119.99480 * 33.46423 * 10 8 7 29 29 H 1.08991 * 109.47351 * 45.00281 * 16 15 14 30 30 H 0.96708 * 114.00246 * 299.99864 * 17 16 15 31 31 H 1.48506 * 109.99834 * 180.02562 * 18 16 15 32 32 H 1.48502 * 110.00011 * 301.31529 * 18 16 15 33 33 H 1.08001 * 122.53844 * 179.73140 * 19 15 14 34 34 H 1.08002 * 125.20306 * 180.21511 * 20 19 15 35 35 H 1.09002 * 113.61188 * 139.93563 * 22 8 7 36 36 H 1.08998 * 113.61156 * 270.83968 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0249 0.6357 -0.7540 7 6 4.1078 2.7141 0.0011 8 6 5.1808 2.2265 0.9890 9 1 6.0813 1.8492 0.5044 10 7 5.4695 3.1823 2.0610 11 16 7.0027 3.2987 2.6759 12 8 7.4261 1.9706 2.9521 13 8 6.9634 4.3226 3.6604 14 6 8.0401 3.8926 1.3814 15 6 9.1347 4.6354 1.5528 16 6 9.6196 5.0623 2.9143 17 8 8.7846 6.1105 3.4102 18 14 11.3742 5.6749 2.7845 19 6 9.7880 4.9894 0.3849 20 6 9.2300 4.5251 -0.7342 21 16 7.7911 3.5961 -0.3343 22 6 4.1927 1.1215 1.3986 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.4173 3.4403 0.4300 27 1 4.5114 3.0306 -0.9607 28 1 4.7625 3.7471 2.4105 29 1 9.5807 4.2132 3.5965 30 1 8.7707 6.9000 2.8517 31 1 11.8644 6.0984 4.1208 32 1 12.2471 4.6040 2.2399 33 1 10.6840 5.5923 0.3804 34 1 9.6023 4.6972 -1.7333 35 1 4.6646 0.1527 1.5627 36 1 3.5254 1.4114 2.2102 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10970308_13652106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:19:12 Heat of formation + Delta-G solvation = -117.900881 kcal Electronic energy + Delta-G solvation = -24901.219543 eV Core-core repulsion = 20993.483942 eV Total energy + Delta-G solvation = -3907.735601 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.047 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90300 -40.05776 -39.79765 -38.32402 -37.47349 -37.11191 -36.93715 -34.34331 -31.40712 -29.29556 -28.04238 -26.83795 -26.65060 -24.28861 -22.70899 -21.85244 -20.73533 -19.99220 -19.69918 -18.93987 -18.48731 -18.09287 -17.91376 -17.45086 -16.93307 -16.69596 -16.27932 -16.08540 -15.91115 -15.65912 -15.10517 -14.66862 -14.44636 -14.24530 -14.07767 -13.92770 -13.72043 -13.65739 -13.56566 -13.29819 -13.23294 -13.04564 -12.72942 -12.61714 -12.34727 -12.24333 -12.10776 -11.94899 -11.84140 -11.76610 -11.40142 -10.66497 -10.49906 -10.37399 -9.60266 -5.09086 -0.83193 -0.62426 0.24431 0.67243 1.06941 1.17651 1.30129 1.62058 1.66122 1.90904 1.95081 2.50025 3.19882 3.27462 3.39929 3.44065 3.54295 3.56951 3.66498 3.82481 4.05353 4.13627 4.20119 4.26381 4.28669 4.29596 4.54735 4.56360 4.66728 4.69166 4.74598 4.85776 4.92246 4.93471 5.12568 5.27356 5.35734 5.85253 6.65553 6.78393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.470 3.530 4 O -0.537 6.537 5 C -0.107 4.107 6 H 0.161 0.839 7 C -0.119 4.119 8 C 0.118 3.882 9 H 0.127 0.873 10 N -1.093 6.093 11 S 2.714 3.286 12 O -0.986 6.986 13 O -0.953 6.953 14 C -0.798 4.798 15 C -0.002 4.002 16 C -0.107 4.107 17 O -0.527 6.527 18 Si 0.812 3.188 19 C -0.170 4.170 20 C -0.148 4.148 21 S 0.223 5.777 22 C -0.136 4.136 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.127 0.873 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.432 0.568 29 H 0.085 0.915 30 H 0.392 0.608 31 H -0.294 1.294 32 H -0.274 1.274 33 H 0.187 0.813 34 H 0.215 0.785 35 H 0.103 0.897 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 1.052 -8.998 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.126 4.126 6 H 0.179 0.821 7 C -0.159 4.159 8 C 0.010 3.990 9 H 0.144 0.856 10 N -0.855 5.855 11 S 2.802 3.198 12 O -0.976 6.976 13 O -0.943 6.943 14 C -1.001 5.001 15 C -0.021 4.021 16 C -0.217 4.217 17 O -0.334 6.334 18 Si 0.714 3.286 19 C -0.199 4.199 20 C -0.285 4.285 21 S 0.489 5.511 22 C -0.175 4.175 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.117 0.883 27 H 0.130 0.870 28 H 0.270 0.730 29 H 0.103 0.897 30 H 0.241 0.759 31 H -0.222 1.222 32 H -0.201 1.201 33 H 0.204 0.796 34 H 0.231 0.769 35 H 0.121 0.879 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.039 -0.321 -8.386 8.456 hybrid contribution -0.073 0.609 0.801 1.009 sum 0.967 0.288 -7.584 7.651 Atomic orbital electron populations 1.23514 0.75140 1.05544 1.02414 1.86520 1.24665 1.33231 1.83476 1.24012 0.92577 0.80988 0.70970 1.90672 1.67909 1.37386 1.46697 1.22557 0.85963 1.01859 1.02262 0.82114 1.23423 0.96376 0.94713 1.01342 1.22480 0.98902 0.89636 0.87977 0.85580 1.55341 1.27012 1.51390 1.51740 1.01175 0.72733 0.73053 0.72883 1.93595 1.82182 1.38619 1.83184 1.93686 1.85852 1.58695 1.56068 1.35446 1.20567 1.24396 1.19657 1.19341 0.92076 0.92699 0.97965 1.25588 1.09857 0.94649 0.91615 1.86776 1.68906 1.26627 1.51050 0.93726 0.68956 0.84462 0.81446 1.20454 1.03977 1.05534 0.89913 1.26675 0.97847 0.99229 1.04763 1.83812 1.25214 1.49793 0.92252 1.23539 0.97725 1.01238 0.95034 0.92226 0.91896 0.85479 0.88308 0.86974 0.73013 0.89699 0.75893 1.22172 1.20057 0.79629 0.76866 0.87873 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.67 10.56 -51.36 -0.54 -1.22 16 3 C 0.47 1.10 7.49 71.24 0.53 1.63 16 4 O -0.54 -4.54 15.65 21.97 0.34 -4.19 16 5 C -0.11 0.49 4.26 -10.96 -0.05 0.44 16 6 H 0.16 -1.66 8.14 -2.38 -0.02 -1.68 16 7 C -0.12 0.65 7.19 31.12 0.22 0.88 16 8 C 0.12 -0.44 3.54 45.52 0.16 -0.28 16 9 H 0.13 -0.78 6.46 -2.39 -0.02 -0.79 16 10 N -1.09 0.66 5.79 -167.19 -0.97 -0.30 16 11 S 2.71 18.19 5.35 -56.49 -0.30 17.88 16 12 O -0.99 -12.70 17.78 -128.00 -2.28 -14.97 16 13 O -0.95 -12.17 15.11 -119.73 -1.81 -13.98 16 14 C -0.80 -2.02 6.48 66.72 0.43 -1.58 16 15 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 16 C -0.11 -0.41 1.87 71.24 0.13 -0.27 16 17 O -0.53 -2.71 11.04 -129.06 -1.42 -4.14 16 18 Si 0.81 -1.61 30.25 68.60 2.08 0.47 16 19 C -0.17 0.93 8.74 21.22 0.19 1.11 16 20 C -0.15 1.16 11.23 66.72 0.75 1.91 16 21 S 0.22 -1.07 20.95 -56.49 -1.18 -2.25 16 22 C -0.14 0.45 7.44 31.18 0.23 0.69 16 23 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 24 H 0.06 -0.08 8.13 -2.38 -0.02 -0.10 16 25 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 26 H 0.10 -0.27 7.43 -2.39 -0.02 -0.28 16 27 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H 0.43 -1.47 8.93 -96.74 -0.86 -2.33 16 29 H 0.09 0.70 7.60 -2.39 -0.02 0.68 16 30 H 0.39 -2.04 8.70 -74.05 -0.64 -2.68 16 31 H -0.29 -1.67 7.11 99.48 0.71 -0.96 16 32 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 33 H 0.19 -2.22 5.74 -2.91 -0.02 -2.24 16 34 H 0.21 -3.23 8.06 -2.91 -0.02 -3.25 16 35 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 Total: 0.00 -30.51 330.48 -2.72 -33.23 By element: Atomic # 1 Polarization: -15.78 SS G_CDS: -0.32 Total: -16.10 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 3.69 Total: 5.57 kcal Atomic # 7 Polarization: 0.66 SS G_CDS: -0.97 Total: -0.30 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -5.71 Total: -38.50 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: 2.08 Total: 0.47 kcal Atomic # 16 Polarization: 17.12 SS G_CDS: -1.49 Total: 15.63 kcal Total: -30.51 -2.72 -33.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10970308_13652106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.671 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds