Wall clock time and date at job start Mon Mar 8 2021 09:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21288 * 119.99593 * 2 1 4 4 C 1.50697 * 120.00369 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.46862 * 300.00562 * 4 2 1 6 6 C 1.53006 * 109.47239 * 59.99719 * 4 2 1 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 10 10 C 1.52997 * 109.46978 * 180.02562 * 8 7 6 11 11 N 1.46507 * 109.47321 * 65.00089 * 10 8 7 12 12 S 1.65596 * 120.00278 * 164.99789 * 11 10 8 13 13 O 1.42092 * 106.40301 * 178.54195 * 12 11 10 14 14 O 1.42108 * 106.40304 * 311.46194 * 12 11 10 15 15 C 1.76197 * 107.21754 * 65.00164 * 12 11 10 16 16 C 1.33391 * 125.20156 * 89.99988 * 15 12 11 17 17 C 1.50696 * 122.53862 * 359.97438 * 16 15 12 18 18 O 1.42892 * 109.47266 * 284.99738 * 17 16 15 19 19 Si 1.86302 * 109.46989 * 164.99957 * 17 16 15 20 20 C 1.38426 * 114.91787 * 179.97438 * 16 15 12 21 21 C 1.33386 * 114.92307 * 0.02562 * 20 16 15 22 22 S 1.75880 * 109.59503 * 359.75389 * 21 20 16 23 23 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 24 24 C 1.52997 * 109.47466 * 180.02562 * 4 2 1 25 25 H 0.97003 * 119.99640 * 180.02562 * 1 2 3 26 26 H 0.96993 * 120.00253 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47002 * 60.00070 * 6 4 2 28 28 H 1.09000 * 109.47050 * 300.00336 * 6 4 2 29 29 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 31 31 H 1.08994 * 109.47445 * 185.00212 * 10 8 7 32 32 H 1.09000 * 109.47459 * 305.00519 * 10 8 7 33 33 H 0.97003 * 119.99345 * 345.00549 * 11 10 8 34 34 H 1.09002 * 109.47050 * 45.00482 * 17 16 15 35 35 H 0.96696 * 114.00436 * 300.00573 * 18 17 16 36 36 H 1.48497 * 110.00015 * 180.02562 * 19 17 16 37 37 H 1.48505 * 109.99940 * 301.32008 * 19 17 16 38 38 H 1.08006 * 122.53207 * 180.02562 * 20 16 15 39 39 H 1.08000 * 125.20118 * 179.97438 * 21 20 16 40 40 H 1.09004 * 109.47368 * 179.97438 * 23 8 7 41 41 H 1.09001 * 109.47372 * 59.99964 * 23 8 7 42 42 H 1.09002 * 109.47153 * 59.99773 * 24 4 2 43 43 H 1.09001 * 109.46832 * 299.99964 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1013 -1.3050 -0.0006 5 1 1.8379 -1.8770 0.8891 6 6 1.7317 -2.1069 -1.2502 7 6 2.4963 -3.4321 -1.2504 8 6 4.0006 -3.1529 -1.2501 9 1 4.2642 -2.5812 -2.1398 10 6 4.7652 -4.4781 -1.2510 11 7 4.5038 -5.1920 -2.5034 12 16 5.4691 -6.4611 -2.9501 13 8 4.9427 -6.9542 -4.1744 14 8 6.8107 -6.0157 -2.8044 15 6 5.2366 -7.7380 -1.7584 16 6 4.3205 -8.7045 -1.8358 17 6 3.3532 -8.8141 -2.9861 18 8 2.3414 -7.8137 -2.8547 19 14 2.5633 -10.5014 -2.9744 20 6 4.3258 -9.5990 -0.7794 21 6 5.2458 -9.3586 0.1560 22 16 6.1813 -7.9370 -0.2882 23 6 4.3702 -2.3512 -0.0005 24 6 3.6055 -1.0254 0.0002 25 1 -0.4850 -0.8401 0.0004 26 1 -0.4850 0.8400 0.0004 27 1 1.9950 -1.5349 -2.1399 28 1 0.6601 -2.3061 -1.2503 29 1 2.2333 -4.0031 -2.1409 30 1 2.2327 -4.0039 -0.3607 31 1 5.8335 -4.2814 -1.1611 32 1 4.4362 -5.0881 -0.4097 33 1 3.7653 -4.9210 -3.0710 34 1 3.8874 -8.6696 -3.9251 35 1 1.8249 -7.8812 -2.0400 36 1 1.6075 -10.6225 -4.1044 37 1 3.6077 -11.5519 -3.0784 38 1 3.6372 -10.4287 -0.7174 39 1 5.3959 -9.9490 1.0479 40 1 5.4420 -2.1526 0.0000 41 1 4.1066 -2.9230 0.8892 42 1 3.8685 -0.4544 0.8906 43 1 3.8692 -0.4533 -0.8893 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11352700_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:32:55 Heat of formation + Delta-G solvation = -120.876024 kcal Electronic energy + Delta-G solvation = -29026.045480 eV Core-core repulsion = 24904.824290 eV Total energy + Delta-G solvation = -4121.221189 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16146 -40.14897 -39.25306 -38.13912 -37.11823 -36.84953 -36.14536 -34.69418 -32.11204 -31.73182 -31.49800 -27.99391 -27.03692 -24.38038 -23.88394 -23.52289 -21.65333 -21.30734 -20.75308 -20.05733 -19.50224 -18.58953 -18.43309 -18.31852 -17.63088 -17.14041 -16.70353 -16.58057 -16.25604 -15.93084 -15.70035 -15.58854 -15.31661 -15.18361 -14.98009 -14.85395 -14.35313 -14.19638 -13.97065 -13.84414 -13.77403 -13.33873 -13.15012 -13.11219 -13.05871 -12.94092 -12.73139 -12.51176 -12.27148 -12.20003 -12.07918 -11.78407 -11.71225 -11.48848 -11.21802 -10.76286 -10.66726 -10.65011 -10.54464 -10.48599 -9.72022 -5.13243 -0.84045 -0.54843 0.24660 0.59018 1.12959 1.18749 1.58962 1.66902 1.93942 1.98870 2.52477 2.67649 3.35974 3.40933 3.43757 3.47713 3.53848 3.61368 3.85590 3.90257 3.95044 3.99735 4.06745 4.21735 4.29513 4.31080 4.37157 4.41517 4.46377 4.50469 4.62337 4.65382 4.79758 4.83216 4.88850 4.93613 4.98562 5.00326 5.11885 5.16007 5.24385 5.39054 5.78733 5.92172 6.32451 6.42191 7.28834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.519 3.481 3 O -0.541 6.541 4 C -0.108 4.108 5 H 0.099 0.901 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.096 4.096 9 H 0.084 0.916 10 C 0.118 3.882 11 N -1.106 6.106 12 S 2.719 3.281 13 O -0.945 6.945 14 O -0.953 6.953 15 C -0.778 4.778 16 C 0.008 3.992 17 C -0.090 4.090 18 O -0.525 6.525 19 Si 0.690 3.310 20 C -0.163 4.163 21 C -0.164 4.164 22 S 0.226 5.774 23 C -0.115 4.115 24 C -0.100 4.100 25 H 0.401 0.599 26 H 0.401 0.599 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.422 0.578 34 H 0.152 0.848 35 H 0.376 0.624 36 H -0.248 1.248 37 H -0.254 1.254 38 H 0.157 0.843 39 H 0.179 0.821 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 -4.014 6.563 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.304 3.696 3 O -0.418 6.418 4 C -0.130 4.130 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.115 4.115 9 H 0.102 0.898 10 C -0.008 4.008 11 N -0.868 5.868 12 S 2.805 3.195 13 O -0.935 6.935 14 O -0.943 6.943 15 C -0.979 4.979 16 C -0.010 4.010 17 C -0.202 4.202 18 O -0.330 6.330 19 Si 0.591 3.409 20 C -0.193 4.193 21 C -0.302 4.302 22 S 0.494 5.506 23 C -0.153 4.153 24 C -0.138 4.138 25 H 0.230 0.770 26 H 0.232 0.768 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.259 0.741 34 H 0.169 0.831 35 H 0.222 0.778 36 H -0.172 1.172 37 H -0.179 1.179 38 H 0.174 0.826 39 H 0.196 0.804 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.234 -3.317 5.666 7.318 hybrid contribution -1.806 -0.829 -0.264 2.004 sum -5.039 -4.146 5.402 8.471 Atomic orbital electron populations 1.43940 1.07404 1.12562 1.78163 1.20749 0.82607 0.91554 0.74732 1.90773 1.68206 1.33792 1.48985 1.21392 0.96941 0.93805 1.00835 0.88303 1.21543 1.00245 0.96204 0.96904 1.21608 0.93954 0.96669 1.02919 1.21402 0.95193 0.94863 1.00090 0.89770 1.21441 1.01011 0.93508 0.84858 1.55414 1.49781 1.48093 1.33506 1.01240 0.73326 0.72274 0.72709 1.93559 1.79821 1.79678 1.40450 1.93624 1.33962 1.80332 1.86337 1.35783 1.13836 1.25451 1.22809 1.19208 0.94063 0.91716 0.96001 1.25548 0.90835 1.05074 0.98761 1.86594 1.47931 1.53085 1.45389 0.95277 0.83172 0.73946 0.88512 1.20254 1.02329 1.02134 0.94567 1.26250 0.98897 1.01458 1.03617 1.84392 1.31785 1.23252 1.11204 1.21584 1.00751 0.95746 0.97198 1.21352 0.91595 0.96964 1.03879 0.77050 0.76797 0.91098 0.91258 0.90972 0.91156 0.90007 0.91473 0.74087 0.83142 0.77763 1.17230 1.17886 0.82623 0.80352 0.90821 0.91310 0.90836 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 2.31 8.77 31.22 0.27 2.58 16 2 C 0.52 0.29 7.43 -10.99 -0.08 0.21 16 3 O -0.54 -2.99 16.82 5.55 0.09 -2.90 16 4 C -0.11 0.24 2.52 -91.77 -0.23 0.01 16 5 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 6 C -0.11 0.39 5.10 -26.73 -0.14 0.25 16 7 C -0.11 0.46 5.08 -26.73 -0.14 0.33 16 8 C -0.10 0.29 2.29 -90.62 -0.21 0.08 16 9 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 10 C 0.12 -0.28 5.61 -4.04 -0.02 -0.30 16 11 N -1.11 1.28 5.88 -10.61 -0.06 1.22 16 12 S 2.72 6.02 5.75 -107.50 -0.62 5.40 16 13 O -0.94 -4.41 14.92 -57.17 -0.85 -5.27 16 14 O -0.95 -4.86 17.38 -57.17 -0.99 -5.85 16 15 C -0.78 -0.54 6.54 29.04 0.19 -0.35 16 16 C 0.01 0.00 5.13 -106.25 -0.55 -0.55 16 17 C -0.09 0.00 1.97 36.00 0.07 0.07 16 18 O -0.53 0.73 12.88 -35.23 -0.45 0.27 16 19 Si 0.69 -1.02 30.25 -169.99 -5.14 -6.16 16 20 C -0.16 0.38 8.74 -41.21 -0.36 0.02 16 21 C -0.16 0.44 11.23 29.04 0.33 0.76 16 22 S 0.23 -0.17 23.21 -107.50 -2.50 -2.66 16 23 C -0.11 0.32 5.20 -26.71 -0.14 0.18 16 24 C -0.10 0.10 4.50 -26.71 -0.12 -0.02 16 25 H 0.40 -2.26 8.25 -40.82 -0.34 -2.60 16 26 H 0.40 -1.14 8.93 -40.82 -0.36 -1.51 16 27 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 28 H 0.07 -0.34 7.57 -51.93 -0.39 -0.73 16 29 H 0.07 -0.30 6.90 -51.93 -0.36 -0.66 16 30 H 0.07 -0.33 8.14 -51.93 -0.42 -0.76 16 31 H 0.08 -0.14 7.75 -51.93 -0.40 -0.54 16 32 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 33 H 0.42 -1.00 7.41 -34.47 -0.26 -1.25 16 34 H 0.15 0.37 5.66 -51.93 -0.29 0.08 16 35 H 0.38 -2.20 8.70 45.56 0.40 -1.81 16 36 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 37 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 38 H 0.16 -0.77 5.73 -52.48 -0.30 -1.07 16 39 H 0.18 -0.96 8.06 -52.49 -0.42 -1.39 16 40 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 41 H 0.07 -0.25 8.14 -51.93 -0.42 -0.68 16 42 H 0.07 0.01 8.10 -51.93 -0.42 -0.41 16 43 H 0.07 0.04 8.10 -51.93 -0.42 -0.38 16 LS Contribution 369.55 15.07 5.57 5.57 Total: 0.00 -12.20 369.55 -11.81 -24.00 By element: Atomic # 1 Polarization: -11.17 SS G_CDS: -5.73 Total: -16.90 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.39 Total: 0.69 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: 0.21 Total: 3.80 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -2.21 Total: -13.74 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.14 Total: -6.16 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -3.11 Total: 2.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -12.20 -11.81 -24.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11352700_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.872 kcal (2) G-P(sol) polarization free energy of solvation -12.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds