Wall clock time and date at job start Mon Mar 8 2021 09:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47304 * 2 1 4 4 C 1.50696 * 109.47490 * 239.99525 * 2 1 3 5 5 C 1.33392 * 125.20280 * 300.33931 * 4 2 1 6 6 C 1.38422 * 114.91872 * 180.20508 * 5 4 2 7 7 S 1.76200 * 122.53898 * 179.76216 * 6 5 4 8 8 O 1.42102 * 106.40457 * 156.19877 * 7 6 5 9 9 O 1.42098 * 106.40260 * 23.27861 * 7 6 5 10 10 N 1.65601 * 107.21823 * 269.73943 * 7 6 5 11 11 C 1.46500 * 120.00250 * 64.99885 * 10 7 6 12 12 H 1.08998 * 109.46845 * 335.00670 * 11 10 7 13 13 C 1.53006 * 109.47249 * 94.99822 * 11 10 7 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 17 17 O 1.42903 * 109.46797 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 19 19 C 1.52997 * 109.47473 * 215.00121 * 11 10 7 20 20 C 1.33390 * 114.92212 * 359.49780 * 6 5 4 21 21 S 1.75883 * 125.20271 * 120.02986 * 4 2 1 22 22 H 0.96698 * 113.99965 * 300.00946 * 1 2 3 23 23 H 1.09008 * 109.46228 * 119.99653 * 2 1 3 24 24 H 1.48500 * 109.99933 * 178.67553 * 3 2 1 25 25 H 1.48496 * 109.99826 * 299.99272 * 3 2 1 26 26 H 1.07997 * 122.54234 * 359.97160 * 5 4 2 27 27 H 0.97002 * 120.00463 * 244.99575 * 10 7 6 28 28 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 29 29 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 30 30 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 32 32 H 0.96699 * 114.00345 * 60.00309 * 17 15 14 33 33 H 1.09004 * 109.47368 * 179.97438 * 18 15 14 34 34 H 1.09001 * 109.47372 * 59.99964 * 18 15 14 35 35 H 1.09002 * 109.47153 * 59.99757 * 19 11 10 36 36 H 1.09001 * 109.46832 * 299.99948 * 19 11 10 37 37 H 1.07998 * 125.20280 * 180.28629 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.6687 -1.9794 -1.5467 6 6 2.2442 -2.4174 -2.7270 7 16 2.0337 -4.0588 -3.3320 8 8 2.2483 -3.9998 -4.7355 9 8 0.8347 -4.5506 -2.7492 10 7 3.2659 -4.9728 -2.7086 11 6 3.3513 -5.1993 -1.2637 12 1 2.8473 -4.3881 -0.7384 13 6 2.6781 -6.5284 -0.9151 14 6 2.7668 -6.7646 0.5939 15 6 4.2363 -6.8107 1.0174 16 1 4.7403 -7.6220 0.4924 17 8 4.3190 -7.0320 2.4268 18 6 4.9094 -5.4817 0.6689 19 6 4.8209 -5.2456 -0.8407 20 6 2.9655 -1.5010 -3.3745 21 16 2.9476 0.0089 -2.4727 22 1 -0.3933 0.4418 0.7650 23 1 1.7922 -0.5138 0.8901 24 1 3.5347 1.7702 0.0323 25 1 1.5617 2.4678 -1.2086 26 1 1.0567 -2.6179 -0.9269 27 1 3.9311 -5.3583 -3.3000 28 1 3.1820 -7.3397 -1.4405 29 1 1.6311 -6.4953 -1.2165 30 1 2.2876 -7.7116 0.8422 31 1 2.2626 -5.9532 1.1190 32 1 3.9116 -7.8585 2.7198 33 1 5.9562 -5.5143 0.9710 34 1 4.4052 -4.6704 1.1939 35 1 5.3005 -4.2988 -1.0890 36 1 5.3248 -6.0569 -1.3660 37 1 3.4813 -1.6616 -4.3097 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_11353602_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:49:49 Heat of formation + Delta-G solvation = -123.458561 kcal Electronic energy + Delta-G solvation = -23615.835064 eV Core-core repulsion = 19999.229177 eV Total energy + Delta-G solvation = -3616.605887 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.34020 -39.45278 -38.23735 -37.62537 -37.36573 -36.85093 -34.25930 -32.03525 -31.96033 -28.98503 -27.28363 -24.92680 -23.93589 -23.25693 -21.38427 -21.14726 -20.12330 -19.12180 -18.52028 -18.48235 -18.25817 -17.95776 -17.39719 -16.42510 -16.23320 -15.77027 -15.59763 -15.46041 -15.10592 -14.53632 -14.45613 -14.29063 -14.19941 -14.12912 -13.79579 -13.38915 -13.30504 -13.13970 -13.05273 -13.01126 -12.91977 -12.62294 -12.36041 -12.28491 -12.21786 -11.86447 -11.81701 -11.45909 -10.88799 -10.67957 -10.55361 -10.18269 -9.89729 -5.38309 -0.77425 -0.52142 0.28228 0.54254 0.91133 1.08733 1.43635 1.75186 1.99713 2.69614 3.09975 3.12656 3.35156 3.43841 3.58185 3.62258 3.79537 3.86715 3.92744 4.02454 4.09171 4.14473 4.21500 4.25480 4.32332 4.37334 4.58808 4.63221 4.76448 4.84425 4.89799 4.97816 5.00333 5.02545 5.03688 5.20090 5.28926 5.81669 6.43401 6.64234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.036 4.036 3 Si 0.671 3.329 4 C -0.182 4.182 5 C -0.042 4.042 6 C -0.687 4.687 7 S 2.708 3.292 8 O -0.955 6.955 9 O -0.944 6.944 10 N -1.111 6.111 11 C 0.152 3.848 12 H 0.087 0.913 13 C -0.138 4.138 14 C -0.151 4.151 15 C 0.102 3.898 16 H 0.057 0.943 17 O -0.568 6.568 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.079 4.079 21 S 0.139 5.861 22 H 0.386 0.614 23 H 0.087 0.913 24 H -0.238 1.238 25 H -0.235 1.235 26 H 0.159 0.841 27 H 0.420 0.580 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.380 0.620 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 1.083 4.822 5.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.149 4.149 3 Si 0.570 3.430 4 C -0.299 4.299 5 C -0.070 4.070 6 C -0.786 4.786 7 S 2.795 3.205 8 O -0.946 6.946 9 O -0.934 6.934 10 N -0.870 5.870 11 C 0.045 3.955 12 H 0.105 0.895 13 C -0.177 4.177 14 C -0.189 4.189 15 C 0.043 3.957 16 H 0.075 0.925 17 O -0.374 6.374 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.218 4.218 21 S 0.402 5.598 22 H 0.235 0.765 23 H 0.105 0.895 24 H -0.162 1.162 25 H -0.158 1.158 26 H 0.176 0.824 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.227 0.773 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.607 3.228 3.164 5.783 hybrid contribution -0.295 -1.945 0.151 1.973 sum 3.312 1.283 3.315 4.859 Atomic orbital electron populations 1.86527 1.16538 1.81837 1.49907 1.23991 0.86135 1.09702 0.95040 0.94716 0.81862 0.78091 0.88300 1.23709 1.07299 0.97589 1.01329 1.19608 0.97743 0.95238 0.94433 1.30077 1.14148 1.26003 1.08387 1.01692 0.73245 0.72713 0.72893 1.93615 1.85575 1.86819 1.28548 1.93613 1.43079 1.77990 1.78732 1.55653 1.48424 1.67387 1.15557 1.20884 0.97408 0.98441 0.78746 0.89486 1.22048 1.02700 0.97153 0.95794 1.22259 0.97345 1.03257 0.96087 1.21862 0.94680 0.97530 0.81638 0.92517 1.86512 1.82363 1.45756 1.22803 1.21448 1.01895 0.96751 0.94920 1.21820 0.95166 1.03379 0.95793 1.25922 0.98279 0.95636 1.01950 1.84484 1.47182 1.13864 1.14278 0.76536 0.89504 1.16192 1.15834 0.82358 0.74473 0.90878 0.89672 0.90966 0.90667 0.77257 0.90516 0.90809 0.90382 0.90615 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.11 12.83 -35.23 -0.45 -0.34 16 2 C -0.04 0.02 2.95 36.00 0.11 0.13 16 3 Si 0.67 -1.10 30.97 -169.99 -5.26 -6.36 16 4 C -0.18 -0.31 5.76 -36.00 -0.21 -0.52 16 5 C -0.04 -0.08 9.12 -41.21 -0.38 -0.46 16 6 C -0.69 -1.07 5.72 -41.21 -0.24 -1.30 16 7 S 2.71 4.70 5.71 -107.50 -0.61 4.09 16 8 O -0.96 -4.18 17.64 -57.17 -1.01 -5.18 16 9 O -0.94 -4.28 16.89 -57.17 -0.97 -5.24 16 10 N -1.11 1.69 5.47 -4.89 -0.03 1.66 16 11 C 0.15 -0.26 2.65 -67.93 -0.18 -0.44 16 12 H 0.09 -0.16 7.41 -51.93 -0.38 -0.54 16 13 C -0.14 0.17 5.53 -26.73 -0.15 0.02 16 14 C -0.15 0.25 5.54 -26.73 -0.15 0.10 16 15 C 0.10 -0.13 3.47 -26.73 -0.09 -0.22 16 16 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 17 O -0.57 -0.01 13.32 -35.23 -0.47 -0.48 16 18 C -0.11 0.17 5.58 -26.71 -0.15 0.02 16 19 C -0.12 0.33 5.45 -26.71 -0.15 0.18 16 20 C -0.08 -0.07 10.70 29.04 0.31 0.24 16 21 S 0.14 0.19 20.58 -107.50 -2.21 -2.03 16 22 H 0.39 -2.10 8.74 45.56 0.40 -1.70 16 23 H 0.09 -0.25 7.96 -51.92 -0.41 -0.66 16 24 H -0.24 -0.07 7.11 56.52 0.40 0.34 16 25 H -0.23 -0.36 7.11 56.52 0.40 0.04 16 26 H 0.16 0.19 7.96 -52.49 -0.42 -0.23 16 27 H 0.42 -1.47 8.84 -34.48 -0.30 -1.77 16 28 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 29 H 0.08 0.02 7.64 -51.93 -0.40 -0.38 16 30 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.38 -1.38 9.08 45.56 0.41 -0.97 16 33 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 35 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 36 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 37 H 0.19 -0.27 8.00 -52.49 -0.42 -0.69 16 LS Contribution 330.87 15.07 4.99 4.99 Total: 0.00 -10.86 330.87 -11.40 -22.25 By element: Atomic # 1 Polarization: -7.01 SS G_CDS: -4.10 Total: -11.11 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.27 Total: -2.24 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -0.03 Total: 1.66 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -2.90 Total: -11.26 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.26 Total: -6.36 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.83 Total: 2.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -10.86 -11.40 -22.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_11353602_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.204 kcal (2) G-P(sol) polarization free energy of solvation -10.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds